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107
8.4 • Méthodes à base de profils
ATPA_VIBAL ( 144) QPVQTGYKSVDSMIPIGRGQRELIIGDRQIGKTALAIDAIIN
ATPA_WHEAT ( 145) EPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILN
ATPA_XENLA ( 188) EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN
ATP2_HEVBR ( 212) QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN
ATP2_MAIZE ( 203) QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN
ATP2_NICPL ( 210) QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN
ATP2_ORYSA ( 201) QILVTGIKVVDLVAPYQRGGKIGLFGGAGVGKTVLIMELINN
ATPB_AEGCO ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_ANASP ( 137) SVFETGIKVVDLLTPYRRGGKIGLFGGAGVGKTVIMMELINN
ATPB_ANGLY ( 145) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_BACFR ( 132) EVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINN
ATPB_BOVIN ( 181) EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN
ATPB_CHLRE ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_CUSRE ( 145) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_CYTLY ( 131) EVLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINN
ATPB_DICDH ( 136) AIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_ECOLI ( 125) ELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRN
ATPB_EUGGR ( 136) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_HORVU ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_HUMAN ( 181) EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN
ATPB_IPOBA ( 145) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_LACCA ( 130) EILETGIKVIDLLEPYLRGGKVGLFGGAGVGKTVLIQELIHN
ATPB_MAIZE ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_MARPO ( 145) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_MYCGA ( 131) EIFETGIKVIDLLIPYAKGGKIGLFGGAGVGKTVLVQELIHN
ATPB_NEUCR ( 170) EILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN
ATPB_NICPL ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_ORYSA ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_PEA ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_PECFR ( 130) QILETGIKVVDLIAPYSRGGKIGLFGGAGVGKTVLIMELIHN
ATPB_PYLLI ( 136) AIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_RAT ( 181) EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN
ATPB_RHOBL ( 130) QILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIQELINN
ATPB_SCHPO ( 178) EILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN
ATPB_SPIOL ( 147) SIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_SYNP6 ( 137) KVFETGIKVIDLLAPYRQGGKIGLFGGAGVGKTVLIQELINN
ATPB_THEP3 ( 133) EILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHN
ATPB_TOBAC ( 147) SIFETGIEVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_VIBAL ( 124) ALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINN
ATPB_WHEAT ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_YEAST ( 165) EILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN
ATPX_BACFI ( 131) EILETGIKVVDLLAPYIIGGKIGLFGGAGVGKTVLIQELINN
//
Pour chaque position dans le bloc, le pourcentage d’occurrence P(i) de chacun
des 20 acides aminés est calculé et donne une matrice 20 × L (ici seules 360 valeurs
des 840 sont montrées).
L’algorithme consiste à calculer la somme Score(j) des pourcentages des acides
aminés correspondant à des segments j de longueur L :
Score j
P i
i 1
=
L
=
107
8.4 • Méthodes à base de profils
ATPA_VIBAL ( 144) QPVQTGYKSVDSMIPIGRGQRELIIGDRQIGKTALAIDAIIN
ATPA_WHEAT ( 145) EPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILN
ATPA_XENLA ( 188) EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN
ATP2_HEVBR ( 212) QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN
ATP2_MAIZE ( 203) QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN
ATP2_NICPL ( 210) QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN
ATP2_ORYSA ( 201) QILVTGIKVVDLVAPYQRGGKIGLFGGAGVGKTVLIMELINN
ATPB_AEGCO ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_ANASP ( 137) SVFETGIKVVDLLTPYRRGGKIGLFGGAGVGKTVIMMELINN
ATPB_ANGLY ( 145) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_BACFR ( 132) EVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINN
ATPB_BOVIN ( 181) EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN
ATPB_CHLRE ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_CUSRE ( 145) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_CYTLY ( 131) EVLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINN
ATPB_DICDH ( 136) AIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_ECOLI ( 125) ELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRN
ATPB_EUGGR ( 136) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_HORVU ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_HUMAN ( 181) EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN
ATPB_IPOBA ( 145) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_LACCA ( 130) EILETGIKVIDLLEPYLRGGKVGLFGGAGVGKTVLIQELIHN
ATPB_MAIZE ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_MARPO ( 145) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_MYCGA ( 131) EIFETGIKVIDLLIPYAKGGKIGLFGGAGVGKTVLVQELIHN
ATPB_NEUCR ( 170) EILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN
ATPB_NICPL ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_ORYSA ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_PEA ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_PECFR ( 130) QILETGIKVVDLIAPYSRGGKIGLFGGAGVGKTVLIMELIHN
ATPB_PYLLI ( 136) AIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_RAT ( 181) EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN
ATPB_RHOBL ( 130) QILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIQELINN
ATPB_SCHPO ( 178) EILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN
ATPB_SPIOL ( 147) SIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_SYNP6 ( 137) KVFETGIKVIDLLAPYRQGGKIGLFGGAGVGKTVLIQELINN
ATPB_THEP3 ( 133) EILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHN
ATPB_TOBAC ( 147) SIFETGIEVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_VIBAL ( 124) ALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINN
ATPB_WHEAT ( 147) SIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINN
ATPB_YEAST ( 165) EILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINN
ATPX_BACFI ( 131) EILETGIKVVDLLAPYIIGGKIGLFGGAGVGKTVLIQELINN
//
Pour chaque position dans le bloc, le pourcentage d’occurrence P(i) de chacun
des 20 acides aminés est calculé et donne une matrice 20 × L (ici seules 360 valeurs
des 840 sont montrées).
L’algorithme consiste à calculer la somme Score(j) des pourcentages des acides
aminés correspondant à des segments j de longueur L :
Score j
P i
i 1
=
L
=