Strain collections, 403, 404
Strigolactone, 149
Succinic acid, 324, 325
Sugars, 156
Supernumerary chromosomes, 25
Symbiosis, 401
Symbiotic interface, 154
Synthetic biology, 241, 271, 297, 321, 327, 333
Synthetic pathway, 253
Syntrophic partnership, 420
T
Tandem repeats, 109, 110
Taxonomy, 399–400
T-branching, 384
Temperature, 82
Tension wood, 388
Terminators, 241
Terpenes, 176, 177
Terrein, 271
tetO operator elements, 241
Tet-off, 241
Tet-on, 241
Tet-on promoter, 271, 273
TetR, 241
Thebaine, 327
Thioesterase, 348–350, 356
Titer, 340, 341, 344–346, 350–354, 357–361
Tolerance, 352–353, 359
Toughness, 389
Transcription factor overexpression, 270
Transcription factors, 50, 84, 91, 178, 179, 181–
184, 191, 269, 270, 353–355
Transcriptional networks, 174, 178–184
Transcriptional-translational negative feedback
loop (TTFL), 79, 84
Transcriptomics, 157, 248, 283–284
Transgenes, 107, 109, 110
Transport, 341, 351–353
Transporters, 149–151, 156, 158
Transport signals, 244–246
Transposable elements (TEe), 108–110, 112,
117, 147
Transposons, 107, 110–112
Triggering signal, 109
Trypacidin, 275
Type I, 384–386
Type II soft rot attack, 385
U
Ubiquitination, 185, 188–193
Ubiquitin-proteasome pathway, 90
Unfolded protein response (UPR), 49, 247
Unfolded protein response elements (UPREs),
53
Unpaired DNA, 107, 110, 111
Upstream open reading frames (uORFs), 87
V
Vaccines, 329, 330
Variegatic acid, 377
Velvet, 311
Velvet complex, 269
Velvet proteins, 180, 183
Versatile peroxidases (VP), 381, 383
Vesicular trafficking, 247–248
Virus, 107, 108, 111
Virus protein (VP16), 241
Vivid (VVD), 82, 306–308, 310–312
Volatile organic compounds (VOCs), 279
W
WD-repeat, 130
White collar complex (WCC), 6, 307, 309–312
White Collar-1 (WC-1), 79, 84, 307, 310–312
White Collar-2 (WC-2), 79, 84, 307, 311
White collar proteins, 181
White rots, 369–371, 378
Wood pulp, 390
X
X-box Binding Protein 1 (XBP1), 52
Xenobiotics, 389
Xylanase, 380
Xylosidase, 380
Y
Yanuthone, 252
Yeast, 340, 343, 344, 347–350, 352–360
Yield, 340, 341, 343–347, 350–353, 358, 360, 361
Z
Zoospores, 414–416, 423
452
Subject Index
Strigolactone, 149
Succinic acid, 324, 325
Sugars, 156
Supernumerary chromosomes, 25
Symbiosis, 401
Symbiotic interface, 154
Synthetic biology, 241, 271, 297, 321, 327, 333
Synthetic pathway, 253
Syntrophic partnership, 420
T
Tandem repeats, 109, 110
Taxonomy, 399–400
T-branching, 384
Temperature, 82
Tension wood, 388
Terminators, 241
Terpenes, 176, 177
Terrein, 271
tetO operator elements, 241
Tet-off, 241
Tet-on, 241
Tet-on promoter, 271, 273
TetR, 241
Thebaine, 327
Thioesterase, 348–350, 356
Titer, 340, 341, 344–346, 350–354, 357–361
Tolerance, 352–353, 359
Toughness, 389
Transcription factor overexpression, 270
Transcription factors, 50, 84, 91, 178, 179, 181–
184, 191, 269, 270, 353–355
Transcriptional networks, 174, 178–184
Transcriptional-translational negative feedback
loop (TTFL), 79, 84
Transcriptomics, 157, 248, 283–284
Transgenes, 107, 109, 110
Transport, 341, 351–353
Transporters, 149–151, 156, 158
Transport signals, 244–246
Transposable elements (TEe), 108–110, 112,
117, 147
Transposons, 107, 110–112
Triggering signal, 109
Trypacidin, 275
Type I, 384–386
Type II soft rot attack, 385
U
Ubiquitination, 185, 188–193
Ubiquitin-proteasome pathway, 90
Unfolded protein response (UPR), 49, 247
Unfolded protein response elements (UPREs),
53
Unpaired DNA, 107, 110, 111
Upstream open reading frames (uORFs), 87
V
Vaccines, 329, 330
Variegatic acid, 377
Velvet, 311
Velvet complex, 269
Velvet proteins, 180, 183
Versatile peroxidases (VP), 381, 383
Vesicular trafficking, 247–248
Virus, 107, 108, 111
Virus protein (VP16), 241
Vivid (VVD), 82, 306–308, 310–312
Volatile organic compounds (VOCs), 279
W
WD-repeat, 130
White collar complex (WCC), 6, 307, 309–312
White Collar-1 (WC-1), 79, 84, 307, 310–312
White Collar-2 (WC-2), 79, 84, 307, 311
White collar proteins, 181
White rots, 369–371, 378
Wood pulp, 390
X
X-box Binding Protein 1 (XBP1), 52
Xenobiotics, 389
Xylanase, 380
Xylosidase, 380
Y
Yanuthone, 252
Yeast, 340, 343, 344, 347–350, 352–360
Yield, 340, 341, 343–347, 350–353, 358, 360, 361
Z
Zoospores, 414–416, 423
452
Subject Index
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