Natural variation, 158–160
Next-generation sequencing (NGS), 207–209
NLR receptors, 123
Nod factor, 151, 153
Non-enzymatic, 373, 374, 376, 378–381, 390,
391
Non-homologous end joining (NHEJ), 230
Non-optimal codons, 87
Non-ribosomal peptides, 176, 177, 278
Non-ribosomal peptide synthetases (NRPS),
282–284
Noscapine, 327
Nucleoporins, 152
Nucleosome, 3
Nutrients, 83
O
Oleochemicals, 339, 345–347, 360
Omics data, 281–286
integration, 285–286
One-fungus-one-name-rule, 400
Opioids, 327, 328, 333
Opsins, 181, 182, 299, 310
Optogenetics, 298, 299, 304
Organismal interactions, 276
fungal-bacterial, 277–278
fungal-fungal, 278–279
fungal-marine, 280
fungal-non-microorganismal, 280
volatile, 279
Orsellinic acid, 277, 283
Oscillation, 78
OSMAC, 268, 282
Oxalate, 377, 383
Oxford Nanopore, 208, 215
Oxidative stress, 114, 115, 179, 183, 185
Oxygen radicals, 381
Oxylipins, 177
P
Pacific Biosciences, 208
PAH degradation (PAHs), 406
Parenchyma, 369, 371, 372, 386, 388, 391
Pathogenicity, 401
Pathogens, 55–62, 105, 115–117
Patulin, 252
PdiA, 247
Pectinase, 378, 381
Pectins, 372, 386
Pentachlorophenol, 390
Pentose phosphate pathway (PPP), 344, 346
PepA, 249
Per-Arnt-Sim (PAS) domain, 81
Periarbuscular membrane, 155
Perifungal membrane, 154
Period, 78
Perithecia, 387, 388
Peroxidase, 373, 378, 381, 382, 389
Pezizomycotina, 127
PFAM, 211
pH, 352, 359, 360
Pharmacy, 405
Phenolate, 377, 383
Phenotypic plasticity, 105, 116, 117
Phosphatases, 90
Phosphate, 155
Phosphorylation site, 83, 85
Photoadaptation, 82
Photoreceptors, 81, 297, 304, 306
Phylogenetic diversity, 403
Phylogenomics, 282
Phytochromes, 181, 299, 301, 306, 311, 312
PKS-NRPS hybrid, 273–275, 282
Plant genotype, 160
Plant interactions, 214–215
Plant pathogens, 214
Plinabulin, 405
Pollutants, 389, 390
Polycentric, 414
Polycistronic expression, 275–276
Polycistronic gene-expression, 232
Polycomb, 16
Polycomb Repressive Complex 2 (PRC2), 16
Polyketides, 176, 177, 272
Polyketide synthases (PKS), 282–284, 378
Polymeric sugars, 405
Polysaccharide, 380–381
Polysome profiling, 56
Post-transcriptional gene silencing (PTGS),
109, 110, 115
Post-transcriptional regulation, 92
Posttranslational modifications, 284
PRC2Polycomb Repressive Complex 2 (PRC2)
Pre-penetration apparatus, 154
Pre-sequence, 245
Preservative, 384, 390
Pretreatment, 390
Primary metabolites, 321–324, 327
Prion, 132
450
Subject Index
Next-generation sequencing (NGS), 207–209
NLR receptors, 123
Nod factor, 151, 153
Non-enzymatic, 373, 374, 376, 378–381, 390,
391
Non-homologous end joining (NHEJ), 230
Non-optimal codons, 87
Non-ribosomal peptides, 176, 177, 278
Non-ribosomal peptide synthetases (NRPS),
282–284
Noscapine, 327
Nucleoporins, 152
Nucleosome, 3
Nutrients, 83
O
Oleochemicals, 339, 345–347, 360
Omics data, 281–286
integration, 285–286
One-fungus-one-name-rule, 400
Opioids, 327, 328, 333
Opsins, 181, 182, 299, 310
Optogenetics, 298, 299, 304
Organismal interactions, 276
fungal-bacterial, 277–278
fungal-fungal, 278–279
fungal-marine, 280
fungal-non-microorganismal, 280
volatile, 279
Orsellinic acid, 277, 283
Oscillation, 78
OSMAC, 268, 282
Oxalate, 377, 383
Oxford Nanopore, 208, 215
Oxidative stress, 114, 115, 179, 183, 185
Oxygen radicals, 381
Oxylipins, 177
P
Pacific Biosciences, 208
PAH degradation (PAHs), 406
Parenchyma, 369, 371, 372, 386, 388, 391
Pathogenicity, 401
Pathogens, 55–62, 105, 115–117
Patulin, 252
PdiA, 247
Pectinase, 378, 381
Pectins, 372, 386
Pentachlorophenol, 390
Pentose phosphate pathway (PPP), 344, 346
PepA, 249
Per-Arnt-Sim (PAS) domain, 81
Periarbuscular membrane, 155
Perifungal membrane, 154
Period, 78
Perithecia, 387, 388
Peroxidase, 373, 378, 381, 382, 389
Pezizomycotina, 127
PFAM, 211
pH, 352, 359, 360
Pharmacy, 405
Phenolate, 377, 383
Phenotypic plasticity, 105, 116, 117
Phosphatases, 90
Phosphate, 155
Phosphorylation site, 83, 85
Photoadaptation, 82
Photoreceptors, 81, 297, 304, 306
Phylogenetic diversity, 403
Phylogenomics, 282
Phytochromes, 181, 299, 301, 306, 311, 312
PKS-NRPS hybrid, 273–275, 282
Plant genotype, 160
Plant interactions, 214–215
Plant pathogens, 214
Plinabulin, 405
Pollutants, 389, 390
Polycentric, 414
Polycistronic expression, 275–276
Polycistronic gene-expression, 232
Polycomb, 16
Polycomb Repressive Complex 2 (PRC2), 16
Polyketides, 176, 177, 272
Polyketide synthases (PKS), 282–284, 378
Polymeric sugars, 405
Polysaccharide, 380–381
Polysome profiling, 56
Post-transcriptional gene silencing (PTGS),
109, 110, 115
Post-transcriptional regulation, 92
Posttranslational modifications, 284
PRC2Polycomb Repressive Complex 2 (PRC2)
Pre-penetration apparatus, 154
Pre-sequence, 245
Preservative, 384, 390
Pretreatment, 390
Primary metabolites, 321–324, 327
Prion, 132
450
Subject Index