128
5. Steitz TA (1999) DNA polymerases: structural diversity and common mechanisms. J Biol
Chem 274(25):17395–17398
6. Prindle MJ, Schmitt MW, Parmeggiani F, Loeb LA (2013) A substitution in the fingers domain
of DNA polymerase δ reduces fidelity by altering nucleotide discrimination in the catalytic
site. J Biol Chem 288(8):5572–5580
7. Kunkel TA (2004) DNA replication fidelity. J Biol Chem 279(17):16895–16898
8. Tsai YC, Johnson KA (2006) A new paradigm for DNA polymerase specificity. Biochemistry
45(32):9675–9687
9. Johnson KA (2010) The kinetic and chemical mechanism of high-fidelity DNA polymerases.
Biochim Biophys Acta 1804(5):1041–1048
10. Gouge J, Ralec C, Henneke G, Delarue M (2012) Molecular recognition of canonical and
deaminated bases by P. abyssi family B DNA polymerase. J Mol Biol 423:315–336
11. Breyer WA, Matthews BW (2001) A structural basis for processivity. Protein Sci 10(9):
1699–1711
12. Camps M, Loeb LA (2004) When pol I goes into high gear: processive DNA synthesis by pol
I in the cell. Cell Cycle 3(2):116–118s
13. Stumpf JD, Copeland WC (2011) Mitochondrial DNA replication and disease: insights from
DNA polymerase γ mutations. Cell Mol Life Sci 68 (2): 219–233
14. Banach-Orlowska M, Fijalkowska IJ, Schaaper RM, Jonczyk P (2005) DNA polymerase II as a
fidelity factor in chromosomal DNA synthesis in Escherichia coli. Mol Microbiol 58(1):61–70
15. Muzi-Falconi M, Giannattasio M, Foiani M, Plevani P (2003) The DNA polymerase α-primase
complex: multiple functions and interactions. ScientificWorldJournal 17(3):21–33
16. Hübscher U, Maga G, Spadari S (2002) Eukaryotic DNA polymerases. Annu Rev Biochem
71:133–163
17. Edwards S, Li CM, Levy DL, Brown J, Snow PM, Campbell JL (2003) Saccharomyces cerevisiae DNA polymerase epsilon and polymerase sigma interact physically and functionally,
suggesting a role for polymerase epsilon in sister chromatid cohesion. Mol Cell Biol 23(8):
2733–2748
18. Gan GN, Wittschieben JP, Wittschieben BØ, Wood RD (2008) DNA polymerase zeta (pol
zeta) in higher eukaryotes. Cell Res 18(1):174–183
19. Kelman Z, O’Donnell M (1995) DNA polymerase III holoenzyme: structure and function of a
chromosomal replicating machine. Annu Rev Biochem 64:171–200
20. O’Donnell M, Jeruzalmi D, Kuriyan J (2001) Clamp loader structure predicts the architecture
of DNA polymerase III holoenzyme and RFC. Curr Biol 11(22):R935–946
21. Cann IK, Komori K, Toh H, Kanai S, Ishino Y (1998) A heterodimeric DNA polymerase:
evidence that members of Euryarchaeota possess a distinct DNA polymerase. Proc Natl Acad
Sci U S A 95(24):14250–14255
22. Jokela M, Eskelinen A, Pospiech H, Rouvinen J, Syväoja JE (2004) Characterization of the
3’ exonuclease subunit DP1 of Methanococcus jannaschii replicative DNA polymerase D.
Nucleic Acids Res 32(8):2430–2440
23. Hayashi I, Morikawa K, Ishino Y (1999) Specific interaction between DNA polymerase
II (PolD) and RadB, a Rad51/Dmc1 homolog, in Pyrococcus furiosus. Nucleic Acids Res
27(24):4695–4702
24. Yamtich J, Sweasy JB (2010) DNA polymerase family X: function, structure, and cellular
roles. Biochim Biophys Acta 1804(5):1136–1150
25. Goodman MF (2002) Error-prone repair DNA polymerases in prokaryotes and eukaryotes.
Annu Rev Biochem 71:17–50
26. Mori T, Nakamura T, Okazaki N, Furukohri A, Maki H, Akiyama MT (2012) Escherichia coli
DinB inhibits replication fork progression without significantly inducing the SOS response.
Genes Genet Syst 87(2):75–87
27. Jarosz DF, Godoy VG, Walker GC (2007) Proficient and accurate bypass of persistent DNA
lesions by DinB DNA polymerases. Cell Cycle 6(7):817–822
28. Patel M, Jiang Q, Woodgate R, Cox MM, Goodman MF (2010) A new model for SOS-induced
mutagenesis: how RecA protein activates DNA polymerase V. Crit Rev Biochem Mol Biol
45(3):171–184
A. Yu. Nyporko
5. Steitz TA (1999) DNA polymerases: structural diversity and common mechanisms. J Biol
Chem 274(25):17395–17398
6. Prindle MJ, Schmitt MW, Parmeggiani F, Loeb LA (2013) A substitution in the fingers domain
of DNA polymerase δ reduces fidelity by altering nucleotide discrimination in the catalytic
site. J Biol Chem 288(8):5572–5580
7. Kunkel TA (2004) DNA replication fidelity. J Biol Chem 279(17):16895–16898
8. Tsai YC, Johnson KA (2006) A new paradigm for DNA polymerase specificity. Biochemistry
45(32):9675–9687
9. Johnson KA (2010) The kinetic and chemical mechanism of high-fidelity DNA polymerases.
Biochim Biophys Acta 1804(5):1041–1048
10. Gouge J, Ralec C, Henneke G, Delarue M (2012) Molecular recognition of canonical and
deaminated bases by P. abyssi family B DNA polymerase. J Mol Biol 423:315–336
11. Breyer WA, Matthews BW (2001) A structural basis for processivity. Protein Sci 10(9):
1699–1711
12. Camps M, Loeb LA (2004) When pol I goes into high gear: processive DNA synthesis by pol
I in the cell. Cell Cycle 3(2):116–118s
13. Stumpf JD, Copeland WC (2011) Mitochondrial DNA replication and disease: insights from
DNA polymerase γ mutations. Cell Mol Life Sci 68 (2): 219–233
14. Banach-Orlowska M, Fijalkowska IJ, Schaaper RM, Jonczyk P (2005) DNA polymerase II as a
fidelity factor in chromosomal DNA synthesis in Escherichia coli. Mol Microbiol 58(1):61–70
15. Muzi-Falconi M, Giannattasio M, Foiani M, Plevani P (2003) The DNA polymerase α-primase
complex: multiple functions and interactions. ScientificWorldJournal 17(3):21–33
16. Hübscher U, Maga G, Spadari S (2002) Eukaryotic DNA polymerases. Annu Rev Biochem
71:133–163
17. Edwards S, Li CM, Levy DL, Brown J, Snow PM, Campbell JL (2003) Saccharomyces cerevisiae DNA polymerase epsilon and polymerase sigma interact physically and functionally,
suggesting a role for polymerase epsilon in sister chromatid cohesion. Mol Cell Biol 23(8):
2733–2748
18. Gan GN, Wittschieben JP, Wittschieben BØ, Wood RD (2008) DNA polymerase zeta (pol
zeta) in higher eukaryotes. Cell Res 18(1):174–183
19. Kelman Z, O’Donnell M (1995) DNA polymerase III holoenzyme: structure and function of a
chromosomal replicating machine. Annu Rev Biochem 64:171–200
20. O’Donnell M, Jeruzalmi D, Kuriyan J (2001) Clamp loader structure predicts the architecture
of DNA polymerase III holoenzyme and RFC. Curr Biol 11(22):R935–946
21. Cann IK, Komori K, Toh H, Kanai S, Ishino Y (1998) A heterodimeric DNA polymerase:
evidence that members of Euryarchaeota possess a distinct DNA polymerase. Proc Natl Acad
Sci U S A 95(24):14250–14255
22. Jokela M, Eskelinen A, Pospiech H, Rouvinen J, Syväoja JE (2004) Characterization of the
3’ exonuclease subunit DP1 of Methanococcus jannaschii replicative DNA polymerase D.
Nucleic Acids Res 32(8):2430–2440
23. Hayashi I, Morikawa K, Ishino Y (1999) Specific interaction between DNA polymerase
II (PolD) and RadB, a Rad51/Dmc1 homolog, in Pyrococcus furiosus. Nucleic Acids Res
27(24):4695–4702
24. Yamtich J, Sweasy JB (2010) DNA polymerase family X: function, structure, and cellular
roles. Biochim Biophys Acta 1804(5):1136–1150
25. Goodman MF (2002) Error-prone repair DNA polymerases in prokaryotes and eukaryotes.
Annu Rev Biochem 71:17–50
26. Mori T, Nakamura T, Okazaki N, Furukohri A, Maki H, Akiyama MT (2012) Escherichia coli
DinB inhibits replication fork progression without significantly inducing the SOS response.
Genes Genet Syst 87(2):75–87
27. Jarosz DF, Godoy VG, Walker GC (2007) Proficient and accurate bypass of persistent DNA
lesions by DinB DNA polymerases. Cell Cycle 6(7):817–822
28. Patel M, Jiang Q, Woodgate R, Cox MM, Goodman MF (2010) A new model for SOS-induced
mutagenesis: how RecA protein activates DNA polymerase V. Crit Rev Biochem Mol Biol
45(3):171–184
A. Yu. Nyporko