Topics in Current Chemistry (2018) 376:28
1 3
77. Yabushita A, Lee YH, Kobayashi T (2010) Development of a multiplex fast-scan system for
ultrafast time-resolved spectroscopy. Rev Sci Instrum. https ://doi.org/10.1063/1.34558 09
78. Helbing J, Hamm P (2011) Compact implementation of Fourier transform two-dimensional IR
spectroscopy without phase ambiguity. J Opt Soc Am B Opt Phys 28(1):171–178. https ://doi.
org/10.1364/josab .28.00017 1
79. Draeger S, Roeding S, Brixner T (2017) Rapid-scan coherent 2D fluorescence spectroscopy.
Opt Express 25(4):3259–3267. https ://doi.org/10.1364/oe.25.00325 9
80. Helbing J, Hamm P (2011) Compact implementation of Fourier transform two-dimensional IR
spectroscopy without phase ambiguity. J Opt Soc Am B 28(1):171–178. https ://doi.org/10.1364/
JOSAB .28.00017 1
81. Kauppinen J, Partanen J (2001) Fourier transforms in spectroscopy, 1st edn. Wiley-VCH, Berlin
82. Jonas DM (2003) Two-dimensional femtosecond spectroscopy. Annu Rev Phys Chem 54:425–
463. https ://doi.org/10.1146/annur ev.physc hem.54.01100 2.10390 7
83. Candes EJ, Wakin MB (2008) An introduction to compressive sampling. IEEE Signal Process
Mag 25(2):21–30. https ://doi.org/10.1109/msp.2007.91473 1
84. Roeding S, Klimovich N, Brixner T (2017) Optimizing sparse sampling for 2D electronic spectroscopy. J Chem Phys. https ://doi.org/10.1063/1.49763 09
85. Dunbar JA, Osborne DG, Anna JM, Kubarych KJ (2013) Accelerated 2D-IR using compressed
sensing. J Phys Chem Lett 4(15):2489–2492. https ://doi.org/10.1021/jz401 281r
86. Almeida J, Prior J, Plenio MB (2012) Computation of two-dimensional spectra assisted by compressed sampling. J Phys Chem Lett 3(18):2692–2696. https ://doi.org/10.1021/jz300 9369
87. Tracy KM, Barich MV, Carver CL, Luther BM, Krummel AT (2016) High-throughput twodimensional infrared (2D IR) spectroscopy achieved by interfacing microfluidic technology
with a high repetition rate 2D IR spectrometer. J Phys Chem Lett 7(23):4865–4870. https ://doi.
org/10.1021/acs.jpcle tt.6b019 41
88. Kanal F, Keiber S, Eck R, Brixner T (2014) 100-kHz shot-to-shot broadband data acquisition
for high-repetition-rate pump-probe spectroscopy. Opt Express 22(14):16965–16975. https ://
doi.org/10.1364/oe.22.01696 5
89. Luther BM, Tracy KM, Gerrity M, Brown S, Krummel AT (2016) 2D IR spectroscopy at
100 kHz utilizing a Mid-IR OPCPA laser source. Opt Express 24(4):4117–4127. https ://doi.
org/10.1364/oe.24.00411 7
90. Bredenbeck J, Helbing J, Nienhaus K, Nienhaus GU, Hamm P (2007) Protein ligand migration
mapped by nonequilibrium 2D-IR exchange spectroscopy. Proc Natl Acad Sci 104(36):14243–
14248. https ://doi.org/10.1073/pnas.06077 58104
91. Ge NH, Hochstrasser RM (2002) Femtosecond two-dimensional infrared spectroscopy: IRCOSY and THIRSTY. PhysChemComm 5(3):17–26. https ://doi.org/10.1039/B1099 35C
92. Rector KD, Fayer MD (1998) Vibrational echoes: a new approach to condensed-matter vibrational spectroscopy. Int Rev Phys Chem 17(3):261–306. https ://doi.org/10.1080/01442 35982
30063
93. Hamm P, Lim M, DeGrado WF, Hochstrasser RM (1999) The two-dimensional IR nonlinear
spectroscopy of a cyclic penta-peptide in relation to its three-dimensional structure. Proc Natl
Acad Sci 96(5):2036–2041. https ://doi.org/10.1073/pnas.96.5.2036
94. Khalil M, Demirdöven N, Tokmakoff A (2003) Coherent 2D IR spectroscopy: molecular structure and dynamics in solution. J Phys Chem A 107(27):5258–5279. https ://doi.org/10.1021/
jp021 9247
95. Ostrander JS, Knepper R, Tappan AS, Kay JJ, Zanni MT, Farrow DA (2017) Energy transfer
between coherently delocalized states in thin films of the explosive pentaerythritol tetranitrate
(PETN) revealed by two-dimensional infrared spectroscopy. J Phys Chem B 121(6):1352–1361.
https ://doi.org/10.1021/acs.jpcb.6b098 79
96. Kraack JP (2017) Ultrafast structural molecular dynamics investigated with 2D infrared spectroscopy methods. Top Curr Chem 375(6):86. https ://doi.org/10.1007/s4106 1-017-0172-1
97. Ferretti M, Hendrikx R, Romero E, Southall J, Cogdell RJ, Novoderezhkin VI, Scholes GD, van
Grondelle R (2016) Dark states in the light-harvesting complex 2 revealed by two-dimensional
electronic spectroscopy. Sci Rep. https ://doi.org/10.1038/srep2 0834
98. Ferretti M, Novoderezhkin VI, Romero E, Augulis R, Pandit A, Zigmantasc D, van Grondelle R
(2014) The nature of coherences in the B820 bacteriochlorophyll dimer revealed by two-dimensional electronic spectroscopy. Phys Chem Chem Phys 16(21):9930–9939. https ://doi.org/10.1039/
c3cp5 4634a
22
Reprinted from the journal
1 3
77. Yabushita A, Lee YH, Kobayashi T (2010) Development of a multiplex fast-scan system for
ultrafast time-resolved spectroscopy. Rev Sci Instrum. https ://doi.org/10.1063/1.34558 09
78. Helbing J, Hamm P (2011) Compact implementation of Fourier transform two-dimensional IR
spectroscopy without phase ambiguity. J Opt Soc Am B Opt Phys 28(1):171–178. https ://doi.
org/10.1364/josab .28.00017 1
79. Draeger S, Roeding S, Brixner T (2017) Rapid-scan coherent 2D fluorescence spectroscopy.
Opt Express 25(4):3259–3267. https ://doi.org/10.1364/oe.25.00325 9
80. Helbing J, Hamm P (2011) Compact implementation of Fourier transform two-dimensional IR
spectroscopy without phase ambiguity. J Opt Soc Am B 28(1):171–178. https ://doi.org/10.1364/
JOSAB .28.00017 1
81. Kauppinen J, Partanen J (2001) Fourier transforms in spectroscopy, 1st edn. Wiley-VCH, Berlin
82. Jonas DM (2003) Two-dimensional femtosecond spectroscopy. Annu Rev Phys Chem 54:425–
463. https ://doi.org/10.1146/annur ev.physc hem.54.01100 2.10390 7
83. Candes EJ, Wakin MB (2008) An introduction to compressive sampling. IEEE Signal Process
Mag 25(2):21–30. https ://doi.org/10.1109/msp.2007.91473 1
84. Roeding S, Klimovich N, Brixner T (2017) Optimizing sparse sampling for 2D electronic spectroscopy. J Chem Phys. https ://doi.org/10.1063/1.49763 09
85. Dunbar JA, Osborne DG, Anna JM, Kubarych KJ (2013) Accelerated 2D-IR using compressed
sensing. J Phys Chem Lett 4(15):2489–2492. https ://doi.org/10.1021/jz401 281r
86. Almeida J, Prior J, Plenio MB (2012) Computation of two-dimensional spectra assisted by compressed sampling. J Phys Chem Lett 3(18):2692–2696. https ://doi.org/10.1021/jz300 9369
87. Tracy KM, Barich MV, Carver CL, Luther BM, Krummel AT (2016) High-throughput twodimensional infrared (2D IR) spectroscopy achieved by interfacing microfluidic technology
with a high repetition rate 2D IR spectrometer. J Phys Chem Lett 7(23):4865–4870. https ://doi.
org/10.1021/acs.jpcle tt.6b019 41
88. Kanal F, Keiber S, Eck R, Brixner T (2014) 100-kHz shot-to-shot broadband data acquisition
for high-repetition-rate pump-probe spectroscopy. Opt Express 22(14):16965–16975. https ://
doi.org/10.1364/oe.22.01696 5
89. Luther BM, Tracy KM, Gerrity M, Brown S, Krummel AT (2016) 2D IR spectroscopy at
100 kHz utilizing a Mid-IR OPCPA laser source. Opt Express 24(4):4117–4127. https ://doi.
org/10.1364/oe.24.00411 7
90. Bredenbeck J, Helbing J, Nienhaus K, Nienhaus GU, Hamm P (2007) Protein ligand migration
mapped by nonequilibrium 2D-IR exchange spectroscopy. Proc Natl Acad Sci 104(36):14243–
14248. https ://doi.org/10.1073/pnas.06077 58104
91. Ge NH, Hochstrasser RM (2002) Femtosecond two-dimensional infrared spectroscopy: IRCOSY and THIRSTY. PhysChemComm 5(3):17–26. https ://doi.org/10.1039/B1099 35C
92. Rector KD, Fayer MD (1998) Vibrational echoes: a new approach to condensed-matter vibrational spectroscopy. Int Rev Phys Chem 17(3):261–306. https ://doi.org/10.1080/01442 35982
30063
93. Hamm P, Lim M, DeGrado WF, Hochstrasser RM (1999) The two-dimensional IR nonlinear
spectroscopy of a cyclic penta-peptide in relation to its three-dimensional structure. Proc Natl
Acad Sci 96(5):2036–2041. https ://doi.org/10.1073/pnas.96.5.2036
94. Khalil M, Demirdöven N, Tokmakoff A (2003) Coherent 2D IR spectroscopy: molecular structure and dynamics in solution. J Phys Chem A 107(27):5258–5279. https ://doi.org/10.1021/
jp021 9247
95. Ostrander JS, Knepper R, Tappan AS, Kay JJ, Zanni MT, Farrow DA (2017) Energy transfer
between coherently delocalized states in thin films of the explosive pentaerythritol tetranitrate
(PETN) revealed by two-dimensional infrared spectroscopy. J Phys Chem B 121(6):1352–1361.
https ://doi.org/10.1021/acs.jpcb.6b098 79
96. Kraack JP (2017) Ultrafast structural molecular dynamics investigated with 2D infrared spectroscopy methods. Top Curr Chem 375(6):86. https ://doi.org/10.1007/s4106 1-017-0172-1
97. Ferretti M, Hendrikx R, Romero E, Southall J, Cogdell RJ, Novoderezhkin VI, Scholes GD, van
Grondelle R (2016) Dark states in the light-harvesting complex 2 revealed by two-dimensional
electronic spectroscopy. Sci Rep. https ://doi.org/10.1038/srep2 0834
98. Ferretti M, Novoderezhkin VI, Romero E, Augulis R, Pandit A, Zigmantasc D, van Grondelle R
(2014) The nature of coherences in the B820 bacteriochlorophyll dimer revealed by two-dimensional electronic spectroscopy. Phys Chem Chem Phys 16(21):9930–9939. https ://doi.org/10.1039/
c3cp5 4634a
22
Reprinted from the journal