229. Harroun TA, Heller WT, Weiss TM, Yang L, Huang HW (1999) Experimental evidence for
hydrophobic matching and membrane-mediated interactions in lipid bilayers containing
gramicidin. Biophys J 76:937–945
230. De Planque MRR, Killian JA (2003) Protein-lipid interactions studied with designed transmembrane peptides: role of hydrophobic matching and interfacial anchoring (review). Mol
Membr Biol 20:271–284
231. Marsh D (2008) Energetics of hydrophobic matching in lipid–protein interactions. Biophys J
94:3996–4013
232. Cybulski LE, de Mendoza D (2011) Bilayer hydrophobic thickness and integral membrane
protein function. Curr Protein Pept Sci 12:760–766
233. Strandberg E, Esteban-Martin S, Ulrich AS, Salgado J (2012) Hydrophobic mismatch of
mobile transmembrane helices: merging theory and experiments. Biochim Biophys Acta
1818:1242–1249
234. Venturoli M, Smit B, Sperotto MM (2005) Simulation studies of protein-induced bilayer
deformations, and lipid-induced protein tilting, on a mesoscopic model for lipid bilayers with
embedded proteins. Biophys J 88:1778
235. Park SH, Opella SJ (2005) Tilt angle of a trans-membrane helix is determined by hydrophobic mismatch. J Mol Biol 350:310–318
236. Holt A, Killian JA (2010) Orientation and dynamics of transmembrane peptides: the power of
simple models. Eur Biophys J 39:609–621
237. Strandberg E, Tremouilhac P, Wadhwani P, Ulrich AS (2009) Synergistic transmembrane
insertion of the heterodimeric PGLA/magainin 2 complex studied by solid-state NMR.
Biochim Biophys Acta 1788:1667–1679
238. Schmidt U, Weiss M (2010) Hydrophobic mismatch-induced clustering as a primer for
protein sorting in the secretory pathway. Biophys Chem 151:34–38
239. Harzer U, Bechinger B (2000) Alignment of lysine-anchored membrane peptides under
conditions of hydrophobic mismatch: A CD,
15
N and
31
P solid-state NMR spectroscopy
investigation. Biochemistry 39(13):106–13114
240. O ¨ zdirekcan S, Rijkers DTS, Liskamp RMJ, Killian JA (2005) Influence of flanking residues
on tilt and rotation angles of transmembrane peptides in lipid bilayers. a solid-state
2
H NMR
study. Biochemistry 44:1004–1012
241. Vostrikov VV, Grant CV, Daily AE, Opella SJ, Koeppe RE II (2008) Comparison of
“polarization inversion with spin exchange at magic angle” and “geometric analysis of
labeled alanines” methods for transmembrane helix alignment. J Am Chem Soc 130(12):
584–12585
242. Chiang C, Shirinian L, Sukharev S (2005) Capping transmembrane helices of MscL with
aromatic residues changes channel response to membrane stretch. Biochemistry 44(12):
589–12597
243. Vostrikov VV, Koeppe RE II (2011) Response of GWALP transmembrane peptides to
changes in the tryptophan anchor positions. Biochemistry 50:7522–7535
244. Neder J, Nielaba P, West B, Schmid F (2012) Interactions of membranes with coarse-grain
proteins: a comparison. New J Phys 14:125017
245. Mouritsen OG, Bloom M (1984) Mattress model of lipid-protein interactions in membranes.
Biophys J 36:141–153
246. Fattal DR, Ben-Shaul A (1993) A molecular model for lipid-protein interaction in membranes: the role of hydrophobic mismatch. Biophys J 65:1795–1809
247. Fattal DR, Ben-Shaul A (1995) Lipid chain packing and lipid–protein interaction in membranes. Phys A 220:192–216
248. Cordomi A, Perez JJ (2007) Molecular dynamics simulations of rhodopsin in different
one-component lipid bilayers. J Phys Chem B 111:7052–7063
249. Neder J, West B, Nielaba P, Schmid F (2010) Membrane-mediated protein–protein interaction: a Monte Carlo study. Curr Nanosci 7:656–666
280
M. Deserno et al.
hydrophobic matching and membrane-mediated interactions in lipid bilayers containing
gramicidin. Biophys J 76:937–945
230. De Planque MRR, Killian JA (2003) Protein-lipid interactions studied with designed transmembrane peptides: role of hydrophobic matching and interfacial anchoring (review). Mol
Membr Biol 20:271–284
231. Marsh D (2008) Energetics of hydrophobic matching in lipid–protein interactions. Biophys J
94:3996–4013
232. Cybulski LE, de Mendoza D (2011) Bilayer hydrophobic thickness and integral membrane
protein function. Curr Protein Pept Sci 12:760–766
233. Strandberg E, Esteban-Martin S, Ulrich AS, Salgado J (2012) Hydrophobic mismatch of
mobile transmembrane helices: merging theory and experiments. Biochim Biophys Acta
1818:1242–1249
234. Venturoli M, Smit B, Sperotto MM (2005) Simulation studies of protein-induced bilayer
deformations, and lipid-induced protein tilting, on a mesoscopic model for lipid bilayers with
embedded proteins. Biophys J 88:1778
235. Park SH, Opella SJ (2005) Tilt angle of a trans-membrane helix is determined by hydrophobic mismatch. J Mol Biol 350:310–318
236. Holt A, Killian JA (2010) Orientation and dynamics of transmembrane peptides: the power of
simple models. Eur Biophys J 39:609–621
237. Strandberg E, Tremouilhac P, Wadhwani P, Ulrich AS (2009) Synergistic transmembrane
insertion of the heterodimeric PGLA/magainin 2 complex studied by solid-state NMR.
Biochim Biophys Acta 1788:1667–1679
238. Schmidt U, Weiss M (2010) Hydrophobic mismatch-induced clustering as a primer for
protein sorting in the secretory pathway. Biophys Chem 151:34–38
239. Harzer U, Bechinger B (2000) Alignment of lysine-anchored membrane peptides under
conditions of hydrophobic mismatch: A CD,
15
N and
31
P solid-state NMR spectroscopy
investigation. Biochemistry 39(13):106–13114
240. O ¨ zdirekcan S, Rijkers DTS, Liskamp RMJ, Killian JA (2005) Influence of flanking residues
on tilt and rotation angles of transmembrane peptides in lipid bilayers. a solid-state
2
H NMR
study. Biochemistry 44:1004–1012
241. Vostrikov VV, Grant CV, Daily AE, Opella SJ, Koeppe RE II (2008) Comparison of
“polarization inversion with spin exchange at magic angle” and “geometric analysis of
labeled alanines” methods for transmembrane helix alignment. J Am Chem Soc 130(12):
584–12585
242. Chiang C, Shirinian L, Sukharev S (2005) Capping transmembrane helices of MscL with
aromatic residues changes channel response to membrane stretch. Biochemistry 44(12):
589–12597
243. Vostrikov VV, Koeppe RE II (2011) Response of GWALP transmembrane peptides to
changes in the tryptophan anchor positions. Biochemistry 50:7522–7535
244. Neder J, Nielaba P, West B, Schmid F (2012) Interactions of membranes with coarse-grain
proteins: a comparison. New J Phys 14:125017
245. Mouritsen OG, Bloom M (1984) Mattress model of lipid-protein interactions in membranes.
Biophys J 36:141–153
246. Fattal DR, Ben-Shaul A (1993) A molecular model for lipid-protein interaction in membranes: the role of hydrophobic mismatch. Biophys J 65:1795–1809
247. Fattal DR, Ben-Shaul A (1995) Lipid chain packing and lipid–protein interaction in membranes. Phys A 220:192–216
248. Cordomi A, Perez JJ (2007) Molecular dynamics simulations of rhodopsin in different
one-component lipid bilayers. J Phys Chem B 111:7052–7063
249. Neder J, West B, Nielaba P, Schmid F (2010) Membrane-mediated protein–protein interaction: a Monte Carlo study. Curr Nanosci 7:656–666
280
M. Deserno et al.