References
1. Rothbauer U, Zolghadr K, Tillib S et al (2006)
Targeting and tracing antigens in live cells with
fluorescent
nanobodies.
Nat
Methods
3:887–889
2. Rothbauer U, Zolghadr K, Muyldermans S et al
(2008) A versatile nanotrap for biochemical and
functional studies with fluorescent fusion proteins. Mol Cell Proteomics 7:282–289
3. Ko ¨ster T, Staiger D (2014) RNA-binding protein immunoprecipitation from whole-cell
extracts. Methods Mol Biol 1062:679–695
4. Ko ¨ster T, Haas M, Staiger D (2014) The RIPper
case: identification of RNA-binding protein targets by RNA immunoprecipitation. Methods
Mol Biol 1158:107–121
5. Mili S, Steitz JA (2004) Evidence for reassociation of RNA-binding proteins after cell lysis:
implications for the interpretation of immunoprecipitation analyses. RNA 10:1692–1694
6. Xing D, Wang Y, Hamilton M et al (2015)
Transcriptome-wide identification of RNA targets of Arabidopsis Serine/Arginine-Rich45
uncovers the unexpected roles of this RNA binding protein in RNA processing. Plant Cell
27:3294–3308
7. Meyer K, Ko ¨ster T, Nolte C et al (2017) Adaptation of iCLIP to plants determines the binding
landscape of the clock-regulated RNA-binding
protein AtGRP7. Genome Biol 18:204
8. Trinkle-Mulcahy L, Boulon S, Lam YW et al
(2008) Identifying specific protein interaction
partners using quantitative mass spectrometry
and bead proteomes. J Cell Biol 183:223–239
9. Niranjanakumari S, Lasda E, Brazas R et al
(2002) Reversible cross-linking combined with
immunoprecipitation to study RNA-protein
interactions in vivo. Methods 26:182–190
RIP-seq
461
1. Rothbauer U, Zolghadr K, Tillib S et al (2006)
Targeting and tracing antigens in live cells with
fluorescent
nanobodies.
Nat
Methods
3:887–889
2. Rothbauer U, Zolghadr K, Muyldermans S et al
(2008) A versatile nanotrap for biochemical and
functional studies with fluorescent fusion proteins. Mol Cell Proteomics 7:282–289
3. Ko ¨ster T, Staiger D (2014) RNA-binding protein immunoprecipitation from whole-cell
extracts. Methods Mol Biol 1062:679–695
4. Ko ¨ster T, Haas M, Staiger D (2014) The RIPper
case: identification of RNA-binding protein targets by RNA immunoprecipitation. Methods
Mol Biol 1158:107–121
5. Mili S, Steitz JA (2004) Evidence for reassociation of RNA-binding proteins after cell lysis:
implications for the interpretation of immunoprecipitation analyses. RNA 10:1692–1694
6. Xing D, Wang Y, Hamilton M et al (2015)
Transcriptome-wide identification of RNA targets of Arabidopsis Serine/Arginine-Rich45
uncovers the unexpected roles of this RNA binding protein in RNA processing. Plant Cell
27:3294–3308
7. Meyer K, Ko ¨ster T, Nolte C et al (2017) Adaptation of iCLIP to plants determines the binding
landscape of the clock-regulated RNA-binding
protein AtGRP7. Genome Biol 18:204
8. Trinkle-Mulcahy L, Boulon S, Lam YW et al
(2008) Identifying specific protein interaction
partners using quantitative mass spectrometry
and bead proteomes. J Cell Biol 183:223–239
9. Niranjanakumari S, Lasda E, Brazas R et al
(2002) Reversible cross-linking combined with
immunoprecipitation to study RNA-protein
interactions in vivo. Methods 26:182–190
RIP-seq
461