56
Cornejo-Castillo, F. M., Munoz-Marin, M. D. C., Turk-Kubo, K. A., Royo-Llonch, M., Farnelid,
H., et al. (2019). UCYN-A3, a newly characterized open ocean sublineage of the symbiotic N 2 -fixing cyanobacterium Candidatus Atelocyanobacterium thalassa. Environmental
Microbiology, 21(1), 111–124. https://doi.org/10.1111/1462- 2920.14429.
D’Hondt, S., Jørgensen, B. B., Jay Miller, D., Batzke, A., Blake, R., et al. (2004). Distributions of
microbial activities in deep subseafloor sediments. Science, 306, 2216–2221.
Dang, H. Y., Luan, X. W., Zhao, J. Y., & Li, J. (2009). Diverse and novel nifH and nifH-like
gene sequences in the deep-sea methane seep sediments of the Okhotsk Sea. Applied and
Environmental Microbiology, 75(7), 2238–2245. https://doi.org/10.1128/aem.02556- 08.
Davies-Barnard, T., & Friedlingstein, P. (2020). The global distribution of biological nitrogen fixation in terrestrial natural ecosystems. Global Biogeochemical Cycles, 34(3), e2019GB006387.
Davy, S. K., Allemand, D., & Weis, V. M. (2012). Cell biology of cnidarian-dinoflagellate symbiosis. Microbiology and Molecular Biology Reviews, 76(2), 229–261.
Dekas, A., Poretsky, R. S., & Orphan, V. J. (2009). Deep-sea Archaea fix and share nitrogen in
methane-consuming microbial consortia. Science, 326(5951), 422.
Dekas, A., Chadwick, G. L., Bowles, M. W., Joye, S. B., & Orphan, V. J. (2014). Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea.
Environmental Microbiology, 16(10), 3012–3029.
Dekas, A., Connon, S. A., Chadwick, G. L., Trembath-Reichert, E., & Orphan, V. J. (2016).
Activity and interactions of methane seep microorganisms assessed by parallel transcription
and FISH-NanoSIMS analyses. The ISME Journal, 10(3), 678.
Dekas, A., Fike, D. A., Chadwick, G. L., Green-Saxena, A., Fortney, J., et al. (2018a). Widespread
nitrogen fixation in sediments from diverse deep-sea sites of elevated carbon loading.
Environmental Microbiology, 20(12), 4281–4296.
Dekas, A. E., Fike, D. A., Chadwick, G. L., Green-Saxena, A., Fortney, J., et al. (2018b).
Widespread nitrogen fixation in sediments from diverse deep-sea sites of elevated carbon loading. Environmental Microbiology, 20(12), 4281–4296. https://doi.
org/10.1111/1462- 2920.14342.
Delmont, T. O., Quince, C., Shaiber, A., Esen, Ö. C., Lee, S. T., et al. (2018). Nitrogen-fixing
populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.
Nature Microbiology, 3(7), 804.
Deutsch, C., Sarmiento, J. L., Sigman, D. M., Gruber, N., & Dunne, J. P. (2007). Spatial coupling
of nitrogen inputs and losses in the ocean. Nature, 445(7124), 163–167.
Diez, B., Bergman, B., Pedrós-Alió, C., Anto, M., & Snoeijs, P. (2012). High cyanobacterial nifH
gene diversity in Arctic seawater and sea ice brine. Environmental Microbiology Reports, 4(3),
360–366.
Farnelid, H., Andersson, A. F., Bertilsson, S., Al-Soud, W. A., Hansen, L. H., et al. (2011).
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of
non-cyanobacteria. PLoS One, 6(4), e19223. https://doi.org/10.1371/journal.pone.0019223.
Farnelid, H., Bentzon-Tilia, M., Andersson, A. F., Bertilsson, S., Jost, G., et al. (2013). Active
nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea.
The ISME Journal, 7(7), 1413.
Farnelid, H., Harder, J., Bentzon-Tilia, M., & Riemann, L. (2014). Isolation of heterotrophic diazotrophic bacteria from estuarine surface waters. Environmental Microbiology, 16, 3072–3082.
Farnelid, H., Turk-Kubo, K., Ploug, H., Ossolinski, J. E., Collins, J. R., et al. (2018). Diverse
diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre. The ISME
Journal, 13, 170–182.
Fernandez, C., González, M. L., Muñoz, C., Molina, V., & Farias, L. (2015). Temporal and spatial
variability of biological nitrogen fixation off the upwelling system of Central Chile (35–38.5°
S). Journal of Geophysical Research, Oceans, 120(5), 3330–3349.
Finni, T., Kononen, K., Olsonen, R., & Wallström, K. (2001). The history of cyanobacterial blooms
in the Baltic Sea. Ambio: A Journal of the Human Environment, 30(4), 172–178.
4 Microorganisms and Habitats
Cornejo-Castillo, F. M., Munoz-Marin, M. D. C., Turk-Kubo, K. A., Royo-Llonch, M., Farnelid,
H., et al. (2019). UCYN-A3, a newly characterized open ocean sublineage of the symbiotic N 2 -fixing cyanobacterium Candidatus Atelocyanobacterium thalassa. Environmental
Microbiology, 21(1), 111–124. https://doi.org/10.1111/1462- 2920.14429.
D’Hondt, S., Jørgensen, B. B., Jay Miller, D., Batzke, A., Blake, R., et al. (2004). Distributions of
microbial activities in deep subseafloor sediments. Science, 306, 2216–2221.
Dang, H. Y., Luan, X. W., Zhao, J. Y., & Li, J. (2009). Diverse and novel nifH and nifH-like
gene sequences in the deep-sea methane seep sediments of the Okhotsk Sea. Applied and
Environmental Microbiology, 75(7), 2238–2245. https://doi.org/10.1128/aem.02556- 08.
Davies-Barnard, T., & Friedlingstein, P. (2020). The global distribution of biological nitrogen fixation in terrestrial natural ecosystems. Global Biogeochemical Cycles, 34(3), e2019GB006387.
Davy, S. K., Allemand, D., & Weis, V. M. (2012). Cell biology of cnidarian-dinoflagellate symbiosis. Microbiology and Molecular Biology Reviews, 76(2), 229–261.
Dekas, A., Poretsky, R. S., & Orphan, V. J. (2009). Deep-sea Archaea fix and share nitrogen in
methane-consuming microbial consortia. Science, 326(5951), 422.
Dekas, A., Chadwick, G. L., Bowles, M. W., Joye, S. B., & Orphan, V. J. (2014). Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea.
Environmental Microbiology, 16(10), 3012–3029.
Dekas, A., Connon, S. A., Chadwick, G. L., Trembath-Reichert, E., & Orphan, V. J. (2016).
Activity and interactions of methane seep microorganisms assessed by parallel transcription
and FISH-NanoSIMS analyses. The ISME Journal, 10(3), 678.
Dekas, A., Fike, D. A., Chadwick, G. L., Green-Saxena, A., Fortney, J., et al. (2018a). Widespread
nitrogen fixation in sediments from diverse deep-sea sites of elevated carbon loading.
Environmental Microbiology, 20(12), 4281–4296.
Dekas, A. E., Fike, D. A., Chadwick, G. L., Green-Saxena, A., Fortney, J., et al. (2018b).
Widespread nitrogen fixation in sediments from diverse deep-sea sites of elevated carbon loading. Environmental Microbiology, 20(12), 4281–4296. https://doi.
org/10.1111/1462- 2920.14342.
Delmont, T. O., Quince, C., Shaiber, A., Esen, Ö. C., Lee, S. T., et al. (2018). Nitrogen-fixing
populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.
Nature Microbiology, 3(7), 804.
Deutsch, C., Sarmiento, J. L., Sigman, D. M., Gruber, N., & Dunne, J. P. (2007). Spatial coupling
of nitrogen inputs and losses in the ocean. Nature, 445(7124), 163–167.
Diez, B., Bergman, B., Pedrós-Alió, C., Anto, M., & Snoeijs, P. (2012). High cyanobacterial nifH
gene diversity in Arctic seawater and sea ice brine. Environmental Microbiology Reports, 4(3),
360–366.
Farnelid, H., Andersson, A. F., Bertilsson, S., Al-Soud, W. A., Hansen, L. H., et al. (2011).
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of
non-cyanobacteria. PLoS One, 6(4), e19223. https://doi.org/10.1371/journal.pone.0019223.
Farnelid, H., Bentzon-Tilia, M., Andersson, A. F., Bertilsson, S., Jost, G., et al. (2013). Active
nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea.
The ISME Journal, 7(7), 1413.
Farnelid, H., Harder, J., Bentzon-Tilia, M., & Riemann, L. (2014). Isolation of heterotrophic diazotrophic bacteria from estuarine surface waters. Environmental Microbiology, 16, 3072–3082.
Farnelid, H., Turk-Kubo, K., Ploug, H., Ossolinski, J. E., Collins, J. R., et al. (2018). Diverse
diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre. The ISME
Journal, 13, 170–182.
Fernandez, C., González, M. L., Muñoz, C., Molina, V., & Farias, L. (2015). Temporal and spatial
variability of biological nitrogen fixation off the upwelling system of Central Chile (35–38.5°
S). Journal of Geophysical Research, Oceans, 120(5), 3330–3349.
Finni, T., Kononen, K., Olsonen, R., & Wallström, K. (2001). The history of cyanobacterial blooms
in the Baltic Sea. Ambio: A Journal of the Human Environment, 30(4), 172–178.
4 Microorganisms and Habitats