N Fertilization Dependent Bacterial and Archaeal …
81
26. Ding, L.J., Su, J.Q., Sun, G.X., Wu, J.S., Wei, W.X.: Increased microbial functional diversity under long-term organic and integrated fertilization in a paddy soil. Appl. Microbiol.
Biotechnol. 102, 1969–1982 (2018). https://doi.org/10.1007/s00253-017-8704-8
27. Dong, D., Feng, Q., McGrouther, K., Yang, M., Wang, H., Wu, W.: Effects of biochar amendment on rice growth and nitrogen retention in a waterlogged paddy field. J. Soils Sediments
15, 153–162 (2015). https://doi.org/10.1007/s11368-014-0984-3
28. Edwards, J., et al.: Structure, variation, and assembly of the root-associated microbiomes of
rice PNAS 112:E911-E920 (2015). https://doi.org/10.1073/pnas.1414592112
29. Fageria, N.K., Moreira, A., Coelho, A.M.: Yield and yield components of upland rice as
influenced by nitrogen sources. J. Plant Nutr. 34, 361–370 (2011). https://doi.org/10.1080/
01904167.2011.536878
30. Fierer, N., Bradford, M.A., Jackson, R.B.: Toward an ecological classification of soil bacteria.
Ecology 88, 1354–1364 (2007). https://doi.org/10.1890/05-1839
31. Fierer, N., Lauber, C.L., Ramirez, K.S., Zaneveld, J., Bradford, M.A., Knight, R.: Comparative
metagenomic, phylogenetic and physiological analyses of soil microbial communities across
nitrogen gradients ISME J. 6, 1007–1017 (2012). https://doi.org/10.1038/ismej.2011.159
32. Frenzel, P., Rothfuss, F., Conrad, R.: Oxygen profiles and methane turnover in a flooded rice
microcosm. Biol. Fert. Soils 14, 84–89 (1992). https://doi.org/10.1007/bf00336255
33. Ge, T., et al.: Rice rhizodeposition and its utilization by microbial groups depends on N
fertilization. Biol. Fert. Soils 53, 37–48 (2017). https://doi.org/10.1007/s00374-016-1155-z
34. Geisseler, D., Linquist, B.A., Lazicki, P.A.: Effect of fertilization on soil microorganisms in
paddy rice systems—a meta-analysis. Soil Biol. Biochem. 115, 452–460 (2017). https://doi.
org/10.1016/j.soilbio.2017.09.018
35. Geisseler, D., Scow, K.M.: Long-term effects of mineral fertilizers on soil microorganisms—a
review. Soil Biol. Biochem. 75, 54–63 (2014). https://doi.org/10.1016/j.soilbio.2014.03.023
36. Gu, Y., et al.: Long-term fertilization structures bacterial and archaeal communities along soil
depth gradient in a paddy soil. Front. Microbiol. 8 (2017). 10.3389/fmicb.2017.01516
37. Hao, X., Liu, S., Wu, J., Hu, R., Tong, C., Su, Y.: Effect of long-term application of inorganic
fertilizer and organic amendments on soil organic matter and microbial biomass in three
subtropical paddy soils. Nutr. Cycl. Agroecosys. 81, 17–24 (2008). https://doi.org/10.1007/
s10705-007-9145-z
38. Hayashi, K., Nishimura, S., Yagi, K.: Ammonia volatilization from the surface of a Japanese
paddy field during rice cultivation. Soil Sci. Plant Nutr. 52, 545–555 (2006). https://doi.org/
10.1111/j.1747-0765.2006.00053.x
39. He, Y., Yang, S., Xu, J., Wang, Y., Peng, S.: Ammonia volatilization losses from paddy fields
under controlled irrigation with different drainage treatments. Sci. World J. 2014, 7 (2014).
https://doi.org/10.1155/2014/417605
40. Hou, P.F., Chien, C.H., Chiang-Hsieh, Y.F., Tseng, K.C., Chow, C.N., Huang, H.J., Chang,
W.C.: Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial
community. Sci. Rep. 8, 7966 (2018). https://doi.org/10.1038/s41598-018-26181-2
41. Ikeda, S., et al.: Low nitrogen fertilization adapts rice root microbiome to low nutrient environment by changing biogeochemical functions. Microbe Environ. 29, 50–59 (2014). https://
doi.org/10.1264/jsme2.ME13110
42. Ishii, S., Ikeda, S., Minamisawa, K., Senoo, K., Nitrogen cycling in rice paddy environments: past achievements and future challenges. Microbe Environ. 1110170328–1110170328
(2009a)
43. Ishii, S., Ikeda, S., Minamisawa, K., Senoo, K.: Nitrogen cycling in rice paddy environments: past achievements and future challenges. Microbe Environ. advpub:1110170328–
1110170328 (2009b). https://doi.org/10.1264/jsme2.ME11293
44. Isobe, K., Ohte, N.: Ecological perspectives on microbes involved in N-cycling. Microbe
Environ. advpub (2014). https://doi.org/10.1264/jsme2.ME13159
45. Jiang, Y., et al.: Crop rotations alter bacterial and fungal diversity in paddy soils across East
Asia. Soil Biol. Biochem. 95, 250–261 (2016). https://doi.org/10.1016/j.soilbio.2016.01.007
81
26. Ding, L.J., Su, J.Q., Sun, G.X., Wu, J.S., Wei, W.X.: Increased microbial functional diversity under long-term organic and integrated fertilization in a paddy soil. Appl. Microbiol.
Biotechnol. 102, 1969–1982 (2018). https://doi.org/10.1007/s00253-017-8704-8
27. Dong, D., Feng, Q., McGrouther, K., Yang, M., Wang, H., Wu, W.: Effects of biochar amendment on rice growth and nitrogen retention in a waterlogged paddy field. J. Soils Sediments
15, 153–162 (2015). https://doi.org/10.1007/s11368-014-0984-3
28. Edwards, J., et al.: Structure, variation, and assembly of the root-associated microbiomes of
rice PNAS 112:E911-E920 (2015). https://doi.org/10.1073/pnas.1414592112
29. Fageria, N.K., Moreira, A., Coelho, A.M.: Yield and yield components of upland rice as
influenced by nitrogen sources. J. Plant Nutr. 34, 361–370 (2011). https://doi.org/10.1080/
01904167.2011.536878
30. Fierer, N., Bradford, M.A., Jackson, R.B.: Toward an ecological classification of soil bacteria.
Ecology 88, 1354–1364 (2007). https://doi.org/10.1890/05-1839
31. Fierer, N., Lauber, C.L., Ramirez, K.S., Zaneveld, J., Bradford, M.A., Knight, R.: Comparative
metagenomic, phylogenetic and physiological analyses of soil microbial communities across
nitrogen gradients ISME J. 6, 1007–1017 (2012). https://doi.org/10.1038/ismej.2011.159
32. Frenzel, P., Rothfuss, F., Conrad, R.: Oxygen profiles and methane turnover in a flooded rice
microcosm. Biol. Fert. Soils 14, 84–89 (1992). https://doi.org/10.1007/bf00336255
33. Ge, T., et al.: Rice rhizodeposition and its utilization by microbial groups depends on N
fertilization. Biol. Fert. Soils 53, 37–48 (2017). https://doi.org/10.1007/s00374-016-1155-z
34. Geisseler, D., Linquist, B.A., Lazicki, P.A.: Effect of fertilization on soil microorganisms in
paddy rice systems—a meta-analysis. Soil Biol. Biochem. 115, 452–460 (2017). https://doi.
org/10.1016/j.soilbio.2017.09.018
35. Geisseler, D., Scow, K.M.: Long-term effects of mineral fertilizers on soil microorganisms—a
review. Soil Biol. Biochem. 75, 54–63 (2014). https://doi.org/10.1016/j.soilbio.2014.03.023
36. Gu, Y., et al.: Long-term fertilization structures bacterial and archaeal communities along soil
depth gradient in a paddy soil. Front. Microbiol. 8 (2017). 10.3389/fmicb.2017.01516
37. Hao, X., Liu, S., Wu, J., Hu, R., Tong, C., Su, Y.: Effect of long-term application of inorganic
fertilizer and organic amendments on soil organic matter and microbial biomass in three
subtropical paddy soils. Nutr. Cycl. Agroecosys. 81, 17–24 (2008). https://doi.org/10.1007/
s10705-007-9145-z
38. Hayashi, K., Nishimura, S., Yagi, K.: Ammonia volatilization from the surface of a Japanese
paddy field during rice cultivation. Soil Sci. Plant Nutr. 52, 545–555 (2006). https://doi.org/
10.1111/j.1747-0765.2006.00053.x
39. He, Y., Yang, S., Xu, J., Wang, Y., Peng, S.: Ammonia volatilization losses from paddy fields
under controlled irrigation with different drainage treatments. Sci. World J. 2014, 7 (2014).
https://doi.org/10.1155/2014/417605
40. Hou, P.F., Chien, C.H., Chiang-Hsieh, Y.F., Tseng, K.C., Chow, C.N., Huang, H.J., Chang,
W.C.: Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial
community. Sci. Rep. 8, 7966 (2018). https://doi.org/10.1038/s41598-018-26181-2
41. Ikeda, S., et al.: Low nitrogen fertilization adapts rice root microbiome to low nutrient environment by changing biogeochemical functions. Microbe Environ. 29, 50–59 (2014). https://
doi.org/10.1264/jsme2.ME13110
42. Ishii, S., Ikeda, S., Minamisawa, K., Senoo, K., Nitrogen cycling in rice paddy environments: past achievements and future challenges. Microbe Environ. 1110170328–1110170328
(2009a)
43. Ishii, S., Ikeda, S., Minamisawa, K., Senoo, K.: Nitrogen cycling in rice paddy environments: past achievements and future challenges. Microbe Environ. advpub:1110170328–
1110170328 (2009b). https://doi.org/10.1264/jsme2.ME11293
44. Isobe, K., Ohte, N.: Ecological perspectives on microbes involved in N-cycling. Microbe
Environ. advpub (2014). https://doi.org/10.1264/jsme2.ME13159
45. Jiang, Y., et al.: Crop rotations alter bacterial and fungal diversity in paddy soils across East
Asia. Soil Biol. Biochem. 95, 250–261 (2016). https://doi.org/10.1016/j.soilbio.2016.01.007