Soil Microbiological Recycling and the Virome Role in a Hectare Grassland
47
24. Benckiser, G., Schnell, S.: Biodiversity in agricultural production systems. Taylor and Francis,
Boca Raton (2007)
25. Benckiser, G., Syring, K.-M.: Erfassung und Modellierung gasförmiger N Verluste einer
Parabraunerde. Z. dt geol. Ges. 136, 1–6 (1985)
26. Benckiser, G., Ladha, J.K., Wiesler, F.: Climate change and nitrogen turnover in soils and
aquatic environments. In: Marxsen, J. (ed.) Climate Change and Microbial Ecology: Current
Research and Future Trends (Chap. 8). Caister Academic Press, Norfolk, UK, p. 22
27. Benckiser, G.: Plastics, micro- and nanomaterials, and virus-soil microbe-plant interactions
in the environment. In: Prassad, R. (ed.) Plant Nanobionics (Chap. 4). Nanotechnology in the
Life Science, pp. 83–96. Springer, Heidelberg (2019)
28. Benckiser, G.: Biofilm surrounded hexachlorobenzene (HCB) crystals and wastewater purification. Examines Mar Biol Oceanogr. 3 (5) (2020). https://doi.org/10.31031/EIMBO.2020.
03.000574
29. Bergkemper, F., Kublik, S., Lang, F., Krüger, J., Vestergaard, G., Schloter, M., Schulz, S.:
Novel oligonucleotide primers reveal a high diversity of microbes which drive phosphorous
turnover in soil. J. Microbiol. Methods 125, 91–97 (2016). https://doi.org/10.1016/j.mimet.
2016.04.011
30. Berry, D., Mader, E., Lee, T.K., Woebken, D., Wang, Y., Zhu, D., Palatinszky, M.,
Schintlmeister, A., Schmid, M.C., Hanson, B.T., Shterzer, N., Mizrahi, I., Rauch, I., Decker,
T., Bocklitz, T., Popp, J., Gibson, C.M., Fowler, P.W., Huang, W.E., Wagner, M.: Tracking
heavy water (D2O) incorporation for identifying and sorting active microbial cells. PNAS
112, E194–E203 (2015). https://doi.org/10.1073/pnas.1420406112
31. Bettarel, Y., Sime-Ngando, T., Amblard, C., Dolan, J.: Viral activity in two contrasting lake
ecosystems Appl. Environ. Microbiol. 70, 2941–2951 (2004). https://doi.org/10.1128/aem.
70.5.2941-2951.200
32. Beutin, L., Hammerl, J.A., Strauch, E., et al.: Spread of a distinct Stx2-encoding phage
prototype among Escherichia coli O104:H4 strains from outbreaks in Germany, Norway, and
Georgia. J. Virol. 86, 10444–1055 (2012). https://doi.org/10.1128/jvi.00986-12
33. Bhowmik, A., Fortuna, A.-M., Cihacek, L.J., Bary, A.I., Cogger, C.G.: Use of biological
indicators of soil health to estimate reactive nitrogen dynamics in long-term organic vegetable
and pasture systems. Soil Biol. Biochem. 103, 308–319 (2016). https://doi.org/10.1016/j.soi
lbio.2016.09.004
34. Bhowmik, A., Fortuna, A.-M., Cihacek, L.J., Bary, A.I., Cogger, C.G.: Potential carbon
sequestration and nitrogen cycling in long-term organic management systems. Renew. Agri.
Food. Syst. 1–13 (2017). https://doi.org/10.1017/si742170516000429
35. Blagodatskaya, E., Kuzyakov, Y.: Active microorganisms in soil: critical review of estimation
criteria and approaches. Soil Biol. Biochem. 67, 192–211 (2013). https://doi.org/10.1016/j.
soilbio.2013.08.024
36. Bloom, J.D., Arnold, F.H.: In the light of directed evolution: pathways of adaptive protein
evolution PNAS 16, 106 (Supplement 1): 9995–10000 (2009). https://doi.org/10.1073/pnas.
0901522106
37. Boenigk, J., Pfandl, K., Stadler, P., Chatzinotas, A.: High diversity of the ‘Spumella-like’
flagellates: an investigation based on the SSU rRNA gene sequences of isolates from habitats
located in six different geographic regions. Environ. Microbiol. 7, 685–697 (2005). https://
doi.org/10.1111/j.1462-2920.2005.00743.x
38. Borriello, G., Werne, E., Roe, F., Kim, A.M., Ehrlich, G.D., Stewart, P.S.: Oxygen limitation
contributes to antibiotic tolerance of Pseudomonas aeruginosa in biofilms. Antimicrobial
agents and chemotherapy 48, 2659–2664 (2004). https://doi.org/10.1128/aac.48.7.2659-2664.
2004
39. Bouwman, L.A., Zwart, K.B.: The ecology of bacterivorous protozoans and nematodes in
arable soil. Agri. Ecosys. Environm. 51, 145–160 (1994). https://doi.org/10.1016/0167-880
9(94)9004
40. Bratbak, G., Heldal, K.: Significance of algal viruses and ecology of Phaeocystis host-virus
interactions. In: Bell, C., Brylinsky, M., Johnson-Green, P. (eds.) Microbial Biosystems.
Atlantic Canada Society for Microbial Ecology, Halifax, pp. 571–575 (2000)
47
24. Benckiser, G., Schnell, S.: Biodiversity in agricultural production systems. Taylor and Francis,
Boca Raton (2007)
25. Benckiser, G., Syring, K.-M.: Erfassung und Modellierung gasförmiger N Verluste einer
Parabraunerde. Z. dt geol. Ges. 136, 1–6 (1985)
26. Benckiser, G., Ladha, J.K., Wiesler, F.: Climate change and nitrogen turnover in soils and
aquatic environments. In: Marxsen, J. (ed.) Climate Change and Microbial Ecology: Current
Research and Future Trends (Chap. 8). Caister Academic Press, Norfolk, UK, p. 22
27. Benckiser, G.: Plastics, micro- and nanomaterials, and virus-soil microbe-plant interactions
in the environment. In: Prassad, R. (ed.) Plant Nanobionics (Chap. 4). Nanotechnology in the
Life Science, pp. 83–96. Springer, Heidelberg (2019)
28. Benckiser, G.: Biofilm surrounded hexachlorobenzene (HCB) crystals and wastewater purification. Examines Mar Biol Oceanogr. 3 (5) (2020). https://doi.org/10.31031/EIMBO.2020.
03.000574
29. Bergkemper, F., Kublik, S., Lang, F., Krüger, J., Vestergaard, G., Schloter, M., Schulz, S.:
Novel oligonucleotide primers reveal a high diversity of microbes which drive phosphorous
turnover in soil. J. Microbiol. Methods 125, 91–97 (2016). https://doi.org/10.1016/j.mimet.
2016.04.011
30. Berry, D., Mader, E., Lee, T.K., Woebken, D., Wang, Y., Zhu, D., Palatinszky, M.,
Schintlmeister, A., Schmid, M.C., Hanson, B.T., Shterzer, N., Mizrahi, I., Rauch, I., Decker,
T., Bocklitz, T., Popp, J., Gibson, C.M., Fowler, P.W., Huang, W.E., Wagner, M.: Tracking
heavy water (D2O) incorporation for identifying and sorting active microbial cells. PNAS
112, E194–E203 (2015). https://doi.org/10.1073/pnas.1420406112
31. Bettarel, Y., Sime-Ngando, T., Amblard, C., Dolan, J.: Viral activity in two contrasting lake
ecosystems Appl. Environ. Microbiol. 70, 2941–2951 (2004). https://doi.org/10.1128/aem.
70.5.2941-2951.200
32. Beutin, L., Hammerl, J.A., Strauch, E., et al.: Spread of a distinct Stx2-encoding phage
prototype among Escherichia coli O104:H4 strains from outbreaks in Germany, Norway, and
Georgia. J. Virol. 86, 10444–1055 (2012). https://doi.org/10.1128/jvi.00986-12
33. Bhowmik, A., Fortuna, A.-M., Cihacek, L.J., Bary, A.I., Cogger, C.G.: Use of biological
indicators of soil health to estimate reactive nitrogen dynamics in long-term organic vegetable
and pasture systems. Soil Biol. Biochem. 103, 308–319 (2016). https://doi.org/10.1016/j.soi
lbio.2016.09.004
34. Bhowmik, A., Fortuna, A.-M., Cihacek, L.J., Bary, A.I., Cogger, C.G.: Potential carbon
sequestration and nitrogen cycling in long-term organic management systems. Renew. Agri.
Food. Syst. 1–13 (2017). https://doi.org/10.1017/si742170516000429
35. Blagodatskaya, E., Kuzyakov, Y.: Active microorganisms in soil: critical review of estimation
criteria and approaches. Soil Biol. Biochem. 67, 192–211 (2013). https://doi.org/10.1016/j.
soilbio.2013.08.024
36. Bloom, J.D., Arnold, F.H.: In the light of directed evolution: pathways of adaptive protein
evolution PNAS 16, 106 (Supplement 1): 9995–10000 (2009). https://doi.org/10.1073/pnas.
0901522106
37. Boenigk, J., Pfandl, K., Stadler, P., Chatzinotas, A.: High diversity of the ‘Spumella-like’
flagellates: an investigation based on the SSU rRNA gene sequences of isolates from habitats
located in six different geographic regions. Environ. Microbiol. 7, 685–697 (2005). https://
doi.org/10.1111/j.1462-2920.2005.00743.x
38. Borriello, G., Werne, E., Roe, F., Kim, A.M., Ehrlich, G.D., Stewart, P.S.: Oxygen limitation
contributes to antibiotic tolerance of Pseudomonas aeruginosa in biofilms. Antimicrobial
agents and chemotherapy 48, 2659–2664 (2004). https://doi.org/10.1128/aac.48.7.2659-2664.
2004
39. Bouwman, L.A., Zwart, K.B.: The ecology of bacterivorous protozoans and nematodes in
arable soil. Agri. Ecosys. Environm. 51, 145–160 (1994). https://doi.org/10.1016/0167-880
9(94)9004
40. Bratbak, G., Heldal, K.: Significance of algal viruses and ecology of Phaeocystis host-virus
interactions. In: Bell, C., Brylinsky, M., Johnson-Green, P. (eds.) Microbial Biosystems.
Atlantic Canada Society for Microbial Ecology, Halifax, pp. 571–575 (2000)