531
Stieglitz JD, Mager EM, Hoenig RH, Benetti DD, Grosell M (2016) Impacts of Deepwater Horizon
crude oil exposure on adult mahi-mahi (Coryphaena hippurus) swim performance. Environ
Toxicol Chem 35(10):2613–2622. https://doi.org/10.1002/etc.3436
Szyf M (2015) Nongenetic inheritance and transgenerational epigenetics. Trends Mol Med
21(2):134–144. https://doi.org/10.1016/j.molmed.2014.12.004
Shiizaki K, Kawanishi M, Yagi T (2017) Modulation of benzo[a]pyrene-DNA adduct formation by
CYP1 inducer and inhibitor. Genes Environ 39:14. https://doi.org/10.1186s41021-017-0076-x
Takata H, Hanafusa T, Mori T, Shimura M, Iida Y, Ishikawa K, Yoshikawa K, Yoshikawa Y,
Maeshima K (2013) Chromatin compaction protects genomic DNA from radiation damage.
PLoS One 8(10):e75622. https://doi.org/10.1371/journal.pone.0075622
Tang WW, Dietmann S, Irie N, Leitch Harry G, Floros Vasileios I, Bradshaw Charles R, Hackett
JA, Chinnery PF, Surani MA (2015) A unique gene regulatory network resets the human
germline epigenome for development. Cell 161(6):1453–1467. https://doi.org/10.1016/j.
cell.2015.04.053
van Straalen NM, Timmermans MJTN (2002) Genetic variation in toxicant-stressed populations:
an evaluation of the “genetic erosion” hypothesis. Hum Ecol Risk Assess Int J 8(5):983–1002.
https://doi.org/10.1080/1080-700291905783
Volkova PY, Geras'kin SA, Horemans N, Makarenko ES, Saenen E, Duarte GT, Nauts R,
Bondarenko VS, Jacobs G, Voorspoels S, Kudin M (2018) Chronic radiation exposure as an
ecological factor: hypermethylation and genetic differentiation in irradiated Scots pine populations. Environ Pollut 232:105–112. https://doi.org/10.1016/j.envpol.2017.08.123
Whalon ME, Mota-Sanchez D, Hollingworth RM (2008) Global pesticide resistance in arthropods.
CABI, Wallingford, Oxfordshire
Whitehead A, Clark BW, Reid NM, Hahn ME, Nacci D (2017) When evolution is the solution
to pollution: key principles, and lessons from rapid repeated adaptation of killifish (Fundulus
heteroclitus) populations. Evol Appl 10(8):762–783. https://doi.org/10.1111/eva.12470
Whitehead A, Dubansky B, Bodinier C, Garcia TI, Miles S, Pilley C, Raghunathan V, Roach JL,
Walker N, Walter RB (2012a) Genomic and physiological footprint of the Deepwater Horizon
oil spill on resident marsh fishes. Proc Natl Acad Sci 109(50):20298–20302
Whitehead A, Dubansky B, Bodinier C, Garcia TI, Miles S, Pilley C, Raghunathan V, Roach JL,
Walker N, Walter RB, Rice CD, Galvez F (2012b) Genomic and physiological footprint of
the Deepwater Horizon oil spill on resident marsh fishes. Proc Natl Acad Sci 109(50):20298–
20302. https://doi.org/10.1073/pnas.1109545108
Whitehead A, Pilcher W, Champlin D, Nacci D (2011) Common mechanism underlies repeated
evolution of extreme pollution tolerance. Proceedings of the Royal Society of London B:
Biological Sciences:rspb20110847
Whitehead A, Triant D, Champlin D, Nacci D (2010) Comparative transcriptomics implicates
mechanisms of evolved pollution tolerance in a killifish population. Mol Ecol 19(23):5186–5203
Wills LP, Zhu S, Willett KL, Di Giulio RT (2009) Effect of CYP1A inhibition on the biotransformation of benzo[a]pyrene in two populations of Fundulus heteroclitus with different exposure
histories. Aquat Toxicol 92(3):195–201
Wirgin I, Roy NK, Loftus M, Chambers RC, Franks DG, Hahn ME (2011) Mechanistic basis of
resistance to PCBs in Atlantic tomcod from the Hudson River. Science 331(6022):1322–1325.
https://doi.org/10.1126/science.1197296
Wirgin I, Waldman JR (1998) Altered gene expression and genetic damage in North American
fish populations. Mutat Res 399(2):193–219. https://doi.org/10.1016/S0027-5107(97)00256-X
Wirgin I, Waldman JR (2004) Resistance to contaminants in North American fish populations.
Mutat Res 552(1):73–100
Xu EG, Khursigara AJ, Magnuson J, Hazard ES, Hardiman G, Esbaugh AJ, Roberts AP, Schlenk
D (2017) Larval red drum (Sciaenops ocellatus) sublethal exposure to weathered Deepwater
Horizon crude oil: developmental and transcriptomic consequences. Environ Sci Technol
51(17):10162–10172
Xu EG, Mager EM, Grosell M, Pasparakis C, Schlenker LS, Stieglitz JD, Benetti D, Hazard ES,
Courtney SM, Diamante G (2016a) Time-and oil-dependent transcriptomic and physiological
30 Genetics and Oil: Transcriptomics, Epigenetics, and Population Genomics as Tools…
Stieglitz JD, Mager EM, Hoenig RH, Benetti DD, Grosell M (2016) Impacts of Deepwater Horizon
crude oil exposure on adult mahi-mahi (Coryphaena hippurus) swim performance. Environ
Toxicol Chem 35(10):2613–2622. https://doi.org/10.1002/etc.3436
Szyf M (2015) Nongenetic inheritance and transgenerational epigenetics. Trends Mol Med
21(2):134–144. https://doi.org/10.1016/j.molmed.2014.12.004
Shiizaki K, Kawanishi M, Yagi T (2017) Modulation of benzo[a]pyrene-DNA adduct formation by
CYP1 inducer and inhibitor. Genes Environ 39:14. https://doi.org/10.1186s41021-017-0076-x
Takata H, Hanafusa T, Mori T, Shimura M, Iida Y, Ishikawa K, Yoshikawa K, Yoshikawa Y,
Maeshima K (2013) Chromatin compaction protects genomic DNA from radiation damage.
PLoS One 8(10):e75622. https://doi.org/10.1371/journal.pone.0075622
Tang WW, Dietmann S, Irie N, Leitch Harry G, Floros Vasileios I, Bradshaw Charles R, Hackett
JA, Chinnery PF, Surani MA (2015) A unique gene regulatory network resets the human
germline epigenome for development. Cell 161(6):1453–1467. https://doi.org/10.1016/j.
cell.2015.04.053
van Straalen NM, Timmermans MJTN (2002) Genetic variation in toxicant-stressed populations:
an evaluation of the “genetic erosion” hypothesis. Hum Ecol Risk Assess Int J 8(5):983–1002.
https://doi.org/10.1080/1080-700291905783
Volkova PY, Geras'kin SA, Horemans N, Makarenko ES, Saenen E, Duarte GT, Nauts R,
Bondarenko VS, Jacobs G, Voorspoels S, Kudin M (2018) Chronic radiation exposure as an
ecological factor: hypermethylation and genetic differentiation in irradiated Scots pine populations. Environ Pollut 232:105–112. https://doi.org/10.1016/j.envpol.2017.08.123
Whalon ME, Mota-Sanchez D, Hollingworth RM (2008) Global pesticide resistance in arthropods.
CABI, Wallingford, Oxfordshire
Whitehead A, Clark BW, Reid NM, Hahn ME, Nacci D (2017) When evolution is the solution
to pollution: key principles, and lessons from rapid repeated adaptation of killifish (Fundulus
heteroclitus) populations. Evol Appl 10(8):762–783. https://doi.org/10.1111/eva.12470
Whitehead A, Dubansky B, Bodinier C, Garcia TI, Miles S, Pilley C, Raghunathan V, Roach JL,
Walker N, Walter RB (2012a) Genomic and physiological footprint of the Deepwater Horizon
oil spill on resident marsh fishes. Proc Natl Acad Sci 109(50):20298–20302
Whitehead A, Dubansky B, Bodinier C, Garcia TI, Miles S, Pilley C, Raghunathan V, Roach JL,
Walker N, Walter RB, Rice CD, Galvez F (2012b) Genomic and physiological footprint of
the Deepwater Horizon oil spill on resident marsh fishes. Proc Natl Acad Sci 109(50):20298–
20302. https://doi.org/10.1073/pnas.1109545108
Whitehead A, Pilcher W, Champlin D, Nacci D (2011) Common mechanism underlies repeated
evolution of extreme pollution tolerance. Proceedings of the Royal Society of London B:
Biological Sciences:rspb20110847
Whitehead A, Triant D, Champlin D, Nacci D (2010) Comparative transcriptomics implicates
mechanisms of evolved pollution tolerance in a killifish population. Mol Ecol 19(23):5186–5203
Wills LP, Zhu S, Willett KL, Di Giulio RT (2009) Effect of CYP1A inhibition on the biotransformation of benzo[a]pyrene in two populations of Fundulus heteroclitus with different exposure
histories. Aquat Toxicol 92(3):195–201
Wirgin I, Roy NK, Loftus M, Chambers RC, Franks DG, Hahn ME (2011) Mechanistic basis of
resistance to PCBs in Atlantic tomcod from the Hudson River. Science 331(6022):1322–1325.
https://doi.org/10.1126/science.1197296
Wirgin I, Waldman JR (1998) Altered gene expression and genetic damage in North American
fish populations. Mutat Res 399(2):193–219. https://doi.org/10.1016/S0027-5107(97)00256-X
Wirgin I, Waldman JR (2004) Resistance to contaminants in North American fish populations.
Mutat Res 552(1):73–100
Xu EG, Khursigara AJ, Magnuson J, Hazard ES, Hardiman G, Esbaugh AJ, Roberts AP, Schlenk
D (2017) Larval red drum (Sciaenops ocellatus) sublethal exposure to weathered Deepwater
Horizon crude oil: developmental and transcriptomic consequences. Environ Sci Technol
51(17):10162–10172
Xu EG, Mager EM, Grosell M, Pasparakis C, Schlenker LS, Stieglitz JD, Benetti D, Hazard ES,
Courtney SM, Diamante G (2016a) Time-and oil-dependent transcriptomic and physiological
30 Genetics and Oil: Transcriptomics, Epigenetics, and Population Genomics as Tools…