530
of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site. BMC Genomics
12(1):263
Oppold A-M, Müller R (2017) Chapter nine - Epigenetics: a hidden target of insecticides. In:
Verlinden H (ed) Advances in insect physiology, vol 53. Academic Press, pp 313–324. https://
doi.org/10.1016/bs.aiip.2017.04.002
Oziolor EM, Bigorgne E, Aguilar L, Usenko S, Matson CW (2014) Evolved resistance to PCB- and
PAH-induced cardiac teratogenesis, and reduced CYP1A activity in Gulf killifish (Fundulus
grandis) populations from the Houston Ship Channel, Texas. Aquat Toxicol 150:210–219.
https://doi.org/10.1016/j.aquatox.2014.03.012
Palumbi SR (2001) Humans as the World's greatest evolutionary force. Science 293(5536):1786–
1790. https://doi.org/10.1126/science.293.5536.1786
Pashin YV, Bakhitova LM (1979) Mutagenic and carcinogenic properties of polycyclic aromatic
hydrocarbons. Environ Health Perspect 30:185–189
Patro R, Duggal G, Kingsford C (2015) Salmon: accurate, versatile and ultrafast quantification
from RNA-seq data using lightweight-alignment. Biorxiv:021592
Peschansky VJ, Wahlestedt C (2014) Non-coding RNAs as direct and indirect modulators of epigenetic regulation. Epigenetics 9(1):3–12. https://doi.org/10.4161/epi.27473
Pilcher W, Miles S, Tang S, Mayer G, Whitehead A (2014) Genomic and genotoxic responses to
controlled weathered-oil exposures confirm and extend field studies on impacts of the jizon oil
spill on native killifish. PLoS One 9(9):e106351
Potok ME, Nix DA, Parnell TJ, Cairns BR (2013) Reprogramming the maternal zebrafish genome
after fertilization to match the paternal methylation pattern. Cell 153(4):759–772. https://doi.
org/10.1016/j.cell.2013.04.030
Puritz JB, Toonen RJ (2011) Coastal pollution limits pelagic larval dispersal. Nat Commun 2:226.
https://doi.org/10.1038/ncomms1238
Reid NM, Proestou DA, Clark BW, Warren WC, Colbourne JK, Shaw JR, Karchner SI, Hahn ME,
Nacci D, Oleksiak MF, Crawford DL, Whitehead A (2016) The genomic landscape of rapid
repeated evolutionary adaptation to toxic pollution in wild fish. Science 354(6317):1305–1308.
https://doi.org/10.1126/science.aah4993
Reik W (2007) Stability and flexibility of epigenetic gene regulation in mammalian development.
Nature 447:425. https://doi.org/10.1038/nature05918
Robertson M, Schrey A, Shayter A, Moss CJ, Richards C (2017) Genetic and epigenetic variation
in Spartina alterniflora following the Deepwater Horizon oil spill. Evol Appl 10(8):792–801.
https://doi.org/10.1111/eva.12482
Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: a Bioconductor package for differential
expression analysis of digital gene expression data. Bioinformatics 26(1):139–140
Schena M, Shalon D, Davis RW, Brown PO (1995) Quantitative monitoring of gene expression
patterns with a complementary DNA microarray. Science 270(5235):467–470
Schlenk D, Handy R, Steinert S, Depledge MH, Benson W (2008a) Biotransformation in fishes.
In: Di Giulio R, Hinton D (eds) The toxicology of fishes, vol 1. CRC Press, Boca Raton, FL,
pp 153–234
Schlenk D, Handy R, Steinert S, Depledge MH, Benson W (2008b) Biomarkers. In: Di Giulio R,
Hinton D (eds) The toxicology of fishes, vol 1. CRC Press, Boca Raton, FL, pp 683–732
Schiebelhut LM, Puritz JB, Dawson MN (2018) Decimation by sea star wasting disease and rapid
genetic change in a keystone species, Pisaster ochraceus. Proc Nat Acad Sci 115:7069. https://
doi.org/10.1073/pnas.1800285115
Shimada T (2006) Xenobiotic-metabolizing enzymes involved in activation and detoxification of
carcinogenic polycyclic aromatic hydrocarbons. Drug Metab Pharmacokinet 21(4):257–276.
https://doi.org/10.2133/dmpk.21.257
Skinner MK (2014) Endocrine disruptor induction of epigenetic transgenerational inheritance of
disease. Mol Cell Endocrinol 398(1):4–12. https://doi.org/10.1016/j.mce.2014.07.019
Sørhus E, Incardona JP, Furmanek T, Goetz GW, Scholz NL, Meier S, Edvardsen RB, Jentoft S
(2017) Novel adverse outcome pathways revealed by chemical genetics in a developing marine
fish. elife 6:e20707
D. S. Portnoy et al.
of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site. BMC Genomics
12(1):263
Oppold A-M, Müller R (2017) Chapter nine - Epigenetics: a hidden target of insecticides. In:
Verlinden H (ed) Advances in insect physiology, vol 53. Academic Press, pp 313–324. https://
doi.org/10.1016/bs.aiip.2017.04.002
Oziolor EM, Bigorgne E, Aguilar L, Usenko S, Matson CW (2014) Evolved resistance to PCB- and
PAH-induced cardiac teratogenesis, and reduced CYP1A activity in Gulf killifish (Fundulus
grandis) populations from the Houston Ship Channel, Texas. Aquat Toxicol 150:210–219.
https://doi.org/10.1016/j.aquatox.2014.03.012
Palumbi SR (2001) Humans as the World's greatest evolutionary force. Science 293(5536):1786–
1790. https://doi.org/10.1126/science.293.5536.1786
Pashin YV, Bakhitova LM (1979) Mutagenic and carcinogenic properties of polycyclic aromatic
hydrocarbons. Environ Health Perspect 30:185–189
Patro R, Duggal G, Kingsford C (2015) Salmon: accurate, versatile and ultrafast quantification
from RNA-seq data using lightweight-alignment. Biorxiv:021592
Peschansky VJ, Wahlestedt C (2014) Non-coding RNAs as direct and indirect modulators of epigenetic regulation. Epigenetics 9(1):3–12. https://doi.org/10.4161/epi.27473
Pilcher W, Miles S, Tang S, Mayer G, Whitehead A (2014) Genomic and genotoxic responses to
controlled weathered-oil exposures confirm and extend field studies on impacts of the jizon oil
spill on native killifish. PLoS One 9(9):e106351
Potok ME, Nix DA, Parnell TJ, Cairns BR (2013) Reprogramming the maternal zebrafish genome
after fertilization to match the paternal methylation pattern. Cell 153(4):759–772. https://doi.
org/10.1016/j.cell.2013.04.030
Puritz JB, Toonen RJ (2011) Coastal pollution limits pelagic larval dispersal. Nat Commun 2:226.
https://doi.org/10.1038/ncomms1238
Reid NM, Proestou DA, Clark BW, Warren WC, Colbourne JK, Shaw JR, Karchner SI, Hahn ME,
Nacci D, Oleksiak MF, Crawford DL, Whitehead A (2016) The genomic landscape of rapid
repeated evolutionary adaptation to toxic pollution in wild fish. Science 354(6317):1305–1308.
https://doi.org/10.1126/science.aah4993
Reik W (2007) Stability and flexibility of epigenetic gene regulation in mammalian development.
Nature 447:425. https://doi.org/10.1038/nature05918
Robertson M, Schrey A, Shayter A, Moss CJ, Richards C (2017) Genetic and epigenetic variation
in Spartina alterniflora following the Deepwater Horizon oil spill. Evol Appl 10(8):792–801.
https://doi.org/10.1111/eva.12482
Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: a Bioconductor package for differential
expression analysis of digital gene expression data. Bioinformatics 26(1):139–140
Schena M, Shalon D, Davis RW, Brown PO (1995) Quantitative monitoring of gene expression
patterns with a complementary DNA microarray. Science 270(5235):467–470
Schlenk D, Handy R, Steinert S, Depledge MH, Benson W (2008a) Biotransformation in fishes.
In: Di Giulio R, Hinton D (eds) The toxicology of fishes, vol 1. CRC Press, Boca Raton, FL,
pp 153–234
Schlenk D, Handy R, Steinert S, Depledge MH, Benson W (2008b) Biomarkers. In: Di Giulio R,
Hinton D (eds) The toxicology of fishes, vol 1. CRC Press, Boca Raton, FL, pp 683–732
Schiebelhut LM, Puritz JB, Dawson MN (2018) Decimation by sea star wasting disease and rapid
genetic change in a keystone species, Pisaster ochraceus. Proc Nat Acad Sci 115:7069. https://
doi.org/10.1073/pnas.1800285115
Shimada T (2006) Xenobiotic-metabolizing enzymes involved in activation and detoxification of
carcinogenic polycyclic aromatic hydrocarbons. Drug Metab Pharmacokinet 21(4):257–276.
https://doi.org/10.2133/dmpk.21.257
Skinner MK (2014) Endocrine disruptor induction of epigenetic transgenerational inheritance of
disease. Mol Cell Endocrinol 398(1):4–12. https://doi.org/10.1016/j.mce.2014.07.019
Sørhus E, Incardona JP, Furmanek T, Goetz GW, Scholz NL, Meier S, Edvardsen RB, Jentoft S
(2017) Novel adverse outcome pathways revealed by chemical genetics in a developing marine
fish. elife 6:e20707
D. S. Portnoy et al.