122
Head IM, Gray ND, Larter SR (2014) Life in the slow lane; biogeochemistry of biodegraded
petroleum containing reservoirs and implications for energy recovery and carbon management.
Front Microbiol 5:566. https://doi.org/10.3389/fmicb.2014.00566
Horikoshi K (1998) Barophiles: deep-sea microorganisms adapted to an extreme environment.
Curr Opin Microbiol 1(3):291–295
Jørgensen BB, Boetius A (2007) Feast and famine — microbial life in the deep-sea bed. Nat Rev
Microbiol 5:770–781
Joye SB (2015) Deepwater Horizon, 5 years on. Science 349(6248):592–593. https://doi.
org/10.1126/science.aab4133
Joye SB, MacDonald IR, Leifer I, Asper V (2011) Magnitude and oxidation potential of hydrocarbon gases released from the BP oil well blowout. Nat Geosci 4(3):160–164. http://www.nature.
com/ngeo/journal/v4/n3/abs/ngeo1067.html#supplementary-information
Joye SB, Teske AP, Kostka JE (2014) Microbial dynamics following the Macondo oil well blowout across Gulf of Mexico environments. Bioscience 64(9):766–777. https://doi.org/10.1093/
biosci/biu121
Joye SB, Kleindienst S, Gilbert JA, Handley KM, Weisenhorn P, Overholt WA, Kostka JE (2016)
Responses of microbial communities to hydrocarbon exposures. Oceanography 29(1):136–149
Joye S, Kleindienst S, Peña-Montenegro TD (2018) SnapShot: microbial hydrocarbon bioremediation. Cell 172(6):1336–1336.e1331. https://doi.org/10.1016/j.cell.2018.02.059
Kallmeyer J, Boetius A (2004) Effects of temperature and pressure on sulfate reduction and
anaerobic oxidation of methane in hydrothermal sediments of Guaymas Basin. Appl Environ
Microbiol 70(2):1231–1233. https://doi.org/10.1128/AEM.70.2.1231-1233.2004
Kessler JD, Valentine DL, Redmond MC, Du M, Chan EW, Mendes SD, Quiroz EW, Villanueva
CJ, Shusta SS, Werra LM, Yvon-Lewis SA, Weber TC (2011) A persistent oxygen anomaly
reveals the fate of spilled methane in the deep Gulf of Mexico. Science 331(6015):312–315.
https://doi.org/10.1126/science.1199697
Kimes NE, Callaghan AV, Suflita JM, Morris PJ (2014) Microbial transformation of the Deepwater
Horizon oil spill – past, present, and future perspectives. Front Microbiol 5:603
King GM, Kostka JE, Hazen TC, Sobecky PA (2015) Microbial responses to the Deepwater
Horizon oil spill: from coastal wetlands to the deep sea. Annu Rev Mar Sci 7:377–401. https://
doi.org/10.1146/annurev-marine-010814-015543
Kleindienst S, Seidel M, Ziervogel K, Grim S, Loftis K, Harrison S, Malkin SY, Perkins MJ, Field
J, Sogin ML, Dittmar T, Passow U, Medeiros PM, Joye SB (2015a) Chemical dispersants can
suppress the activity of natural oil-degrading microorganisms. Proc Natl Acad Sci 112(48).
https://doi.org/10.1073/pnas.1507380112
Kleindienst S, Paul JH, Joye SB (2015b) Using dispersants after oil spills: impacts on the composition and activity of microbial communities. Nat Rev Microbiol 13(6):388–396. https://doi.
org/10.1038/nrmicro3452
Kleindienst S, Grim S, Sogin M, Bracco A, Crespo-Medina M, Joye SB (2015c) Diverse, rare
microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume. ISME
J. https://doi.org/10.1038/ismej.2015.121
Leahy JG, Colwell RR (1990) Microbial degradation of hydrocarbons in the environment.
Microbiol Rev 54(3):305–315
Liu J, Bacosa HP, Liu Z (2017) Potential environmental factors affecting oil-degrading bacterial populations in deep and surface waters of the northern Gulf of Mexico. Front Microbiol
7:2131
Marietou A, Chastain R, Beulig F, Scoma A, Hazen TC, Bartlett DH (2018) The effect of hydrostatic pressure on enrichments of hydrocarbon degrading microbes from the Gulf of Mexico
following the Deepwater Horizon oil spill. Front Microbiol 9:808
Mason OU, Hazen TC, Borglin S, Chain PSG, Dubinsky EA, Fortney JL, Han J, Holman H-YN,
Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou
J, Rubin EM, Jansson JK (2012) Metagenome, metatranscriptome and single-cell sequencing
reveal microbial response to Deepwater Horizon oil spill. ISME J 6(9):1715–1727. https://doi.
org/10.1038/ismej.2012.59
J. E. Kostka et al.
Head IM, Gray ND, Larter SR (2014) Life in the slow lane; biogeochemistry of biodegraded
petroleum containing reservoirs and implications for energy recovery and carbon management.
Front Microbiol 5:566. https://doi.org/10.3389/fmicb.2014.00566
Horikoshi K (1998) Barophiles: deep-sea microorganisms adapted to an extreme environment.
Curr Opin Microbiol 1(3):291–295
Jørgensen BB, Boetius A (2007) Feast and famine — microbial life in the deep-sea bed. Nat Rev
Microbiol 5:770–781
Joye SB (2015) Deepwater Horizon, 5 years on. Science 349(6248):592–593. https://doi.
org/10.1126/science.aab4133
Joye SB, MacDonald IR, Leifer I, Asper V (2011) Magnitude and oxidation potential of hydrocarbon gases released from the BP oil well blowout. Nat Geosci 4(3):160–164. http://www.nature.
com/ngeo/journal/v4/n3/abs/ngeo1067.html#supplementary-information
Joye SB, Teske AP, Kostka JE (2014) Microbial dynamics following the Macondo oil well blowout across Gulf of Mexico environments. Bioscience 64(9):766–777. https://doi.org/10.1093/
biosci/biu121
Joye SB, Kleindienst S, Gilbert JA, Handley KM, Weisenhorn P, Overholt WA, Kostka JE (2016)
Responses of microbial communities to hydrocarbon exposures. Oceanography 29(1):136–149
Joye S, Kleindienst S, Peña-Montenegro TD (2018) SnapShot: microbial hydrocarbon bioremediation. Cell 172(6):1336–1336.e1331. https://doi.org/10.1016/j.cell.2018.02.059
Kallmeyer J, Boetius A (2004) Effects of temperature and pressure on sulfate reduction and
anaerobic oxidation of methane in hydrothermal sediments of Guaymas Basin. Appl Environ
Microbiol 70(2):1231–1233. https://doi.org/10.1128/AEM.70.2.1231-1233.2004
Kessler JD, Valentine DL, Redmond MC, Du M, Chan EW, Mendes SD, Quiroz EW, Villanueva
CJ, Shusta SS, Werra LM, Yvon-Lewis SA, Weber TC (2011) A persistent oxygen anomaly
reveals the fate of spilled methane in the deep Gulf of Mexico. Science 331(6015):312–315.
https://doi.org/10.1126/science.1199697
Kimes NE, Callaghan AV, Suflita JM, Morris PJ (2014) Microbial transformation of the Deepwater
Horizon oil spill – past, present, and future perspectives. Front Microbiol 5:603
King GM, Kostka JE, Hazen TC, Sobecky PA (2015) Microbial responses to the Deepwater
Horizon oil spill: from coastal wetlands to the deep sea. Annu Rev Mar Sci 7:377–401. https://
doi.org/10.1146/annurev-marine-010814-015543
Kleindienst S, Seidel M, Ziervogel K, Grim S, Loftis K, Harrison S, Malkin SY, Perkins MJ, Field
J, Sogin ML, Dittmar T, Passow U, Medeiros PM, Joye SB (2015a) Chemical dispersants can
suppress the activity of natural oil-degrading microorganisms. Proc Natl Acad Sci 112(48).
https://doi.org/10.1073/pnas.1507380112
Kleindienst S, Paul JH, Joye SB (2015b) Using dispersants after oil spills: impacts on the composition and activity of microbial communities. Nat Rev Microbiol 13(6):388–396. https://doi.
org/10.1038/nrmicro3452
Kleindienst S, Grim S, Sogin M, Bracco A, Crespo-Medina M, Joye SB (2015c) Diverse, rare
microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume. ISME
J. https://doi.org/10.1038/ismej.2015.121
Leahy JG, Colwell RR (1990) Microbial degradation of hydrocarbons in the environment.
Microbiol Rev 54(3):305–315
Liu J, Bacosa HP, Liu Z (2017) Potential environmental factors affecting oil-degrading bacterial populations in deep and surface waters of the northern Gulf of Mexico. Front Microbiol
7:2131
Marietou A, Chastain R, Beulig F, Scoma A, Hazen TC, Bartlett DH (2018) The effect of hydrostatic pressure on enrichments of hydrocarbon degrading microbes from the Gulf of Mexico
following the Deepwater Horizon oil spill. Front Microbiol 9:808
Mason OU, Hazen TC, Borglin S, Chain PSG, Dubinsky EA, Fortney JL, Han J, Holman H-YN,
Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou
J, Rubin EM, Jansson JK (2012) Metagenome, metatranscriptome and single-cell sequencing
reveal microbial response to Deepwater Horizon oil spill. ISME J 6(9):1715–1727. https://doi.
org/10.1038/ismej.2012.59
J. E. Kostka et al.