121
References
Bagby SC, Reddy CM, Aeppli C, Fisher GB, Valentine DL (2017) Persistence and biodegradation
of oil at the ocean floor following Deepwater Horizon. Proc Natl Acad Sci 114(1):E9
Biddle JF, White JR, Teske AP, House CH (2011) Metagenomics of the subsurface Brazos-Trinity
Basin (IODP site 1320): comparison with other sediment and pyrosequenced metagenomes.
ISME J 5:1038–1047
Bowles MW, Samarkin VA, Joye SB (2011) Improved measurement of microbial activity in
deep-sea sediments at in situ pressure and methane concentration. Limnol Oceanogr Methods
9(10):499–506. https://doi.org/10.4319/lom.2011.9.499
Brooks GR, Larson RA, Schwing PT, Romero I, Moore C, Reichart GJ, Jilbert T, Chanton JP, Hastings
DW, Overholt WA, Marks KP, Kostka JE, Holmes CW, Hollander D (2015) Sedimentation pulse in
the NE Gulf of Mexico following the 2010 DWH blowout. PLoS One 10:1–24
Camilli R, Reddy CM, Yoerger DR, Van Mooy BAS, Jakuba MV, Kinsey JC, McIntyre CP,
Sylva SP, Maloney JV (2010) Tracking hydrocarbon plume transport and biodegradation at
Deepwater Horizon. Science 330(6001):201–204. https://doi.org/10.1126/science.1195223
Case DH, Ijiri A, Morono Y, Tavormina P, Orphan VJ, Inagaki F (2017) Aerobic and anaerobic
methanotrophic communities associated with methane hydrates exposed on the seafloor: a
high-pressure sampling and stable isotope-incubation experiment. Front Microbiol 8:2569
Chanton JP, Cherrier J, Wilson RM, Sarkodee-Adoo J, Bosman S, Mickle A, Graham WM (2012)
Radiocarbon evidence that carbon from the Deepwater Horizon spill entered the planktonic
food web of the Gulf of Mexico. Environ Res Lett 7:045303
Crespo-Medina M, Meile CD, Hunter KS, Diercks AR, Asper VL, Orphan VJ, Joye SB (2014) The
rise and fall of methanotrophy following a Deepwater oil-well blowout. Nat Geosci 7(6):423–
427. https://doi.org/10.1038/ngeo2156
Daly KL, Passow U, Chanton J, Hollander D (2016) Assessing the impacts of oil-associated
marine snow formation and sedimentation during and after the Deepwater Horizon oil spill.
Anthropocene 13:18–33. https://doi.org/10.1016/j.ancene.2016.01.006
Deusner C, Meyer V, Ferdelman TG (2009) High-pressure systems for gas-phase free continuous
incubation of enriched marine microbial communities performing anaerobic oxidation of methane. Biotechnol Bioeng:105. https://doi.org/10.1002/bit.22553
Dubinsky EA, Conrad ME, Chakraborty R, Bill M, Borglin SE, Hollibaugh JT, Mason OU,
M. Piceno Y, Reid FC, Stringfellow WT, Tom LM (2013) Succession of hydrocarbondegrading bacteria in the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico.
Environ Sci Technol 47(19):10860–10867
Fasca H, de Castilho LV, de Castilho JFM, Pasqualino IP, Alvarez VM, de Azevedo Jurelevicius D,
Seldin L (2018) Response of marine bacteria to oil contamination and to high pressure and low
temperature deep sea conditions. MicrobiologyOpen 7(2):e00550
Ferguson RMW, Gontikaki E, Anderson JA, Witte U (2017) The variable influence of dispersant
on degradation of oil hydrocarbons in subarctic deep-sea sediments at low temperatures (0–5
°C). Sci Rep 7(1):2253. https://doi.org/10.1038/s41598-017-02475-9
Grossi V, Yakimov MM, Ali BA, Tapilatu Y, Cuny P, Goutx M, LaCono V, Giuliano L, Tamburini C
(2010) Hydrostatic pressure affects membrane and storage lipid compositions of the piezotolerant hydrocarbon-degrading Marinobacter hydrocarbonoclasticus strain #5. Environ Microbiol
12(7):2020–2033. https://doi.org/10.1111/j.1462-2920.2010.02213.x
Hazen TC, Prince RC (2015) Marine oil biodegradation. Environ Sci Technol 50:2121–2129
Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst
A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL,
Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R,
Sonnenthal EL, D'haeseleer P, Holman HY, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou
J, Mason OU (2010) Deep-sea oil plume enriches indigenous oil-degrading Bacteria. Science
330(6001):204–208. https://doi.org/10.1126/science.1195979
Head IM, Jones DM, Röling WF (2006) Marine microorganisms make a meal of oil. Nat Rev
Microbiol 4(3):17
7 Biodegradation of Petroleum Hydrocarbons in the Deep Sea
References
Bagby SC, Reddy CM, Aeppli C, Fisher GB, Valentine DL (2017) Persistence and biodegradation
of oil at the ocean floor following Deepwater Horizon. Proc Natl Acad Sci 114(1):E9
Biddle JF, White JR, Teske AP, House CH (2011) Metagenomics of the subsurface Brazos-Trinity
Basin (IODP site 1320): comparison with other sediment and pyrosequenced metagenomes.
ISME J 5:1038–1047
Bowles MW, Samarkin VA, Joye SB (2011) Improved measurement of microbial activity in
deep-sea sediments at in situ pressure and methane concentration. Limnol Oceanogr Methods
9(10):499–506. https://doi.org/10.4319/lom.2011.9.499
Brooks GR, Larson RA, Schwing PT, Romero I, Moore C, Reichart GJ, Jilbert T, Chanton JP, Hastings
DW, Overholt WA, Marks KP, Kostka JE, Holmes CW, Hollander D (2015) Sedimentation pulse in
the NE Gulf of Mexico following the 2010 DWH blowout. PLoS One 10:1–24
Camilli R, Reddy CM, Yoerger DR, Van Mooy BAS, Jakuba MV, Kinsey JC, McIntyre CP,
Sylva SP, Maloney JV (2010) Tracking hydrocarbon plume transport and biodegradation at
Deepwater Horizon. Science 330(6001):201–204. https://doi.org/10.1126/science.1195223
Case DH, Ijiri A, Morono Y, Tavormina P, Orphan VJ, Inagaki F (2017) Aerobic and anaerobic
methanotrophic communities associated with methane hydrates exposed on the seafloor: a
high-pressure sampling and stable isotope-incubation experiment. Front Microbiol 8:2569
Chanton JP, Cherrier J, Wilson RM, Sarkodee-Adoo J, Bosman S, Mickle A, Graham WM (2012)
Radiocarbon evidence that carbon from the Deepwater Horizon spill entered the planktonic
food web of the Gulf of Mexico. Environ Res Lett 7:045303
Crespo-Medina M, Meile CD, Hunter KS, Diercks AR, Asper VL, Orphan VJ, Joye SB (2014) The
rise and fall of methanotrophy following a Deepwater oil-well blowout. Nat Geosci 7(6):423–
427. https://doi.org/10.1038/ngeo2156
Daly KL, Passow U, Chanton J, Hollander D (2016) Assessing the impacts of oil-associated
marine snow formation and sedimentation during and after the Deepwater Horizon oil spill.
Anthropocene 13:18–33. https://doi.org/10.1016/j.ancene.2016.01.006
Deusner C, Meyer V, Ferdelman TG (2009) High-pressure systems for gas-phase free continuous
incubation of enriched marine microbial communities performing anaerobic oxidation of methane. Biotechnol Bioeng:105. https://doi.org/10.1002/bit.22553
Dubinsky EA, Conrad ME, Chakraborty R, Bill M, Borglin SE, Hollibaugh JT, Mason OU,
M. Piceno Y, Reid FC, Stringfellow WT, Tom LM (2013) Succession of hydrocarbondegrading bacteria in the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico.
Environ Sci Technol 47(19):10860–10867
Fasca H, de Castilho LV, de Castilho JFM, Pasqualino IP, Alvarez VM, de Azevedo Jurelevicius D,
Seldin L (2018) Response of marine bacteria to oil contamination and to high pressure and low
temperature deep sea conditions. MicrobiologyOpen 7(2):e00550
Ferguson RMW, Gontikaki E, Anderson JA, Witte U (2017) The variable influence of dispersant
on degradation of oil hydrocarbons in subarctic deep-sea sediments at low temperatures (0–5
°C). Sci Rep 7(1):2253. https://doi.org/10.1038/s41598-017-02475-9
Grossi V, Yakimov MM, Ali BA, Tapilatu Y, Cuny P, Goutx M, LaCono V, Giuliano L, Tamburini C
(2010) Hydrostatic pressure affects membrane and storage lipid compositions of the piezotolerant hydrocarbon-degrading Marinobacter hydrocarbonoclasticus strain #5. Environ Microbiol
12(7):2020–2033. https://doi.org/10.1111/j.1462-2920.2010.02213.x
Hazen TC, Prince RC (2015) Marine oil biodegradation. Environ Sci Technol 50:2121–2129
Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst
A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL,
Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R,
Sonnenthal EL, D'haeseleer P, Holman HY, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou
J, Mason OU (2010) Deep-sea oil plume enriches indigenous oil-degrading Bacteria. Science
330(6001):204–208. https://doi.org/10.1126/science.1195979
Head IM, Jones DM, Röling WF (2006) Marine microorganisms make a meal of oil. Nat Rev
Microbiol 4(3):17
7 Biodegradation of Petroleum Hydrocarbons in the Deep Sea