97
Tara N, Afzal M, Ansari TM, Tahseen R, Iqbal S, Khan QM (2014) Combined use of alkanedegrading and plant growth-promoting bacteria enhanced phytoremediation of diesel contaminated soil. Int J Phytoremediation 16:1268–1277
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM,
Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S,
Wolf YI, Yin JJ, Natale DA (2003) The COG database: an updated version includes eukaryotes.
BMC Bioinform 11:41
Taylor JD, McKew BA, Kuhl A, McGenity TJ, Underwood GJC (2013) Microphytobenthic
extracellular polymeric substances (EPS) in intertidal sediments fuelboth generalist and specialist EPS-degrading bacteria. Limnol Oceanogr 58:1463–1480
Teeling H, Glöckner FO (2012) Current opportunities and challenges in microbial metagenome
analysis – a bioinformatic perspective. Brief Bioinform 3:728–742
Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner FO (2004) TETRA: a web-service and a
stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA
sequences. BMC Bioinform 5:163
Teira E, Reinthaler T, Pernthaler A, Pernthaler J, Herndl GJ (2004) Combining catalyzed reporter
deposition-fluorescence in situ hybridization and microautoradiography to detect substrate
utilization by bacteria and archaea in the deep ocean. Appl Environ Microbiol 70:441–4414
Teixeira C, Almeida CMR, da Silva MN, Bordalo AA, Mucha AP (2014) Development of autochthonous microbial consortia for enhanced phytoremediation of salt-marsh sediments contaminated with cadmium. Sci Total Environ 493:757–765
Telenius H et al (1992) Degenerate oligonucleotide-primed PCR: general amplification of target
DNA by a single degenerate primer. Genomics 13:718–725
Tewari S, Arora NK (2013) In: Arora NK (ed) Plant microbe symbiosis: fundamentals and
advances, vol 2013. Springer, New Delhi, pp 105–126
Thomas T, Gilbert J, Meyer F (2012) Metagenomics – a guide from sampling to data analysis.
Microb Inform Exp 2:3
Torsvik V, Ovreas L (2002) Microbial diversity and function in soil: from genes to ecosystems.
Curr Opin Microbiol 5:240–245
Tour JM, Kittrell C, Colvin V (2010) Green carbon as a bridge to renewable energy. Nat Mater
9:871–874
Trapnell C (2015) Defining cell types and states with single-cell genomics. Genome Res
10:1491–1498
Treangen GJ, Koren S, Sommer DD, Liu B, Astrovskaya I, Ondov B, Darling AE, Phillippy AM,
Pop M (2013) MetAMOS: a modular and open source metagenomic assembly and analysis
pipeline. Genome Biol 14:R2
Tripathi V, Dubey RK, Edrisi SA, Narain K, Singh HB, Singh N, Abhilash PC (2014a) Towards
the ecological profiling of a pesticide contaminated soil site for remediation and management.
Ecol Eng 71:318–325
Tripathi V, Dubey RK, Singh HB, Singh N, Abhilash PC (2014b) Is Vigna radiata (L.) R Wilczek
a suitable crop for Lindane contaminated soil? Ecol Eng 73:219–223
Tripathi V, Abhilash PC, Singh HB, Singh N, Patra DD (2015a) Effect of temperature variation on
lindane dissipation and microbial activity in soil. Ecol Eng 79:54–59
Tripathi V, Fraceto LF, Abhilash PC (2015b) Sustainable clean-up technologies for soils contaminated with multiple pollutants: plant-microbe-pollutant and climate nexus. Ecol Eng
82:330–335
Tripathi V, Edrisi SA, Abhilash PC (2016a) Towards the coupling of phytoremediation with bioenergy production. Renew Sust Energ Rev 57:1386–1389
Tripathi V, Edrisi SA, O’Donovan A, Gupta VK, Abhilash PC (2016b) Bioremediation for fueling
the biobased economy. Trends Biotechnol 34:775–777
Tripathi V, Edrisi SA, Chen B, Gupta VK, Abhilash PC, Vilu R, Gathergood N (2017)
Biotechnological advances for restoring degraded land for sustainable development. Trends
Biotechnol. https://doi.org/10.1016/j.tibtech.2017.05.001
References
Tara N, Afzal M, Ansari TM, Tahseen R, Iqbal S, Khan QM (2014) Combined use of alkanedegrading and plant growth-promoting bacteria enhanced phytoremediation of diesel contaminated soil. Int J Phytoremediation 16:1268–1277
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM,
Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S,
Wolf YI, Yin JJ, Natale DA (2003) The COG database: an updated version includes eukaryotes.
BMC Bioinform 11:41
Taylor JD, McKew BA, Kuhl A, McGenity TJ, Underwood GJC (2013) Microphytobenthic
extracellular polymeric substances (EPS) in intertidal sediments fuelboth generalist and specialist EPS-degrading bacteria. Limnol Oceanogr 58:1463–1480
Teeling H, Glöckner FO (2012) Current opportunities and challenges in microbial metagenome
analysis – a bioinformatic perspective. Brief Bioinform 3:728–742
Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner FO (2004) TETRA: a web-service and a
stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA
sequences. BMC Bioinform 5:163
Teira E, Reinthaler T, Pernthaler A, Pernthaler J, Herndl GJ (2004) Combining catalyzed reporter
deposition-fluorescence in situ hybridization and microautoradiography to detect substrate
utilization by bacteria and archaea in the deep ocean. Appl Environ Microbiol 70:441–4414
Teixeira C, Almeida CMR, da Silva MN, Bordalo AA, Mucha AP (2014) Development of autochthonous microbial consortia for enhanced phytoremediation of salt-marsh sediments contaminated with cadmium. Sci Total Environ 493:757–765
Telenius H et al (1992) Degenerate oligonucleotide-primed PCR: general amplification of target
DNA by a single degenerate primer. Genomics 13:718–725
Tewari S, Arora NK (2013) In: Arora NK (ed) Plant microbe symbiosis: fundamentals and
advances, vol 2013. Springer, New Delhi, pp 105–126
Thomas T, Gilbert J, Meyer F (2012) Metagenomics – a guide from sampling to data analysis.
Microb Inform Exp 2:3
Torsvik V, Ovreas L (2002) Microbial diversity and function in soil: from genes to ecosystems.
Curr Opin Microbiol 5:240–245
Tour JM, Kittrell C, Colvin V (2010) Green carbon as a bridge to renewable energy. Nat Mater
9:871–874
Trapnell C (2015) Defining cell types and states with single-cell genomics. Genome Res
10:1491–1498
Treangen GJ, Koren S, Sommer DD, Liu B, Astrovskaya I, Ondov B, Darling AE, Phillippy AM,
Pop M (2013) MetAMOS: a modular and open source metagenomic assembly and analysis
pipeline. Genome Biol 14:R2
Tripathi V, Dubey RK, Edrisi SA, Narain K, Singh HB, Singh N, Abhilash PC (2014a) Towards
the ecological profiling of a pesticide contaminated soil site for remediation and management.
Ecol Eng 71:318–325
Tripathi V, Dubey RK, Singh HB, Singh N, Abhilash PC (2014b) Is Vigna radiata (L.) R Wilczek
a suitable crop for Lindane contaminated soil? Ecol Eng 73:219–223
Tripathi V, Abhilash PC, Singh HB, Singh N, Patra DD (2015a) Effect of temperature variation on
lindane dissipation and microbial activity in soil. Ecol Eng 79:54–59
Tripathi V, Fraceto LF, Abhilash PC (2015b) Sustainable clean-up technologies for soils contaminated with multiple pollutants: plant-microbe-pollutant and climate nexus. Ecol Eng
82:330–335
Tripathi V, Edrisi SA, Abhilash PC (2016a) Towards the coupling of phytoremediation with bioenergy production. Renew Sust Energ Rev 57:1386–1389
Tripathi V, Edrisi SA, O’Donovan A, Gupta VK, Abhilash PC (2016b) Bioremediation for fueling
the biobased economy. Trends Biotechnol 34:775–777
Tripathi V, Edrisi SA, Chen B, Gupta VK, Abhilash PC, Vilu R, Gathergood N (2017)
Biotechnological advances for restoring degraded land for sustainable development. Trends
Biotechnol. https://doi.org/10.1016/j.tibtech.2017.05.001
References