96
Sharpton TJ (2014) An introduction to the analysis of shotgun metagenomic data. Front Plant Sci
5:209
Sheng X, Sun L, Huang Z, He L, Zhang W, Chen Z (2012) Promotion of growth and Cu accumulation of bio-energy crop (Zea mays) by bacteria: implications for energy plant biomass production and phytoremediation. J Environ Manag 103:58–64
Shokrall SI, Spall JL, Gibson JF, Hajibabaei M (2012) Mol Ecol 21:1794–1805
Sims D, Sudbery I, Ilott NE, Heger A, Ponting CP (2014) Sequencing depth and coverage: key
considerations in genomic analyses. Nat Rev Genet 2:121–132
Singh BK, Trivedi P (2017) Microbiome and the future for food and nutrient security.
Microb Biotechnol 10:50–53
Singh BK, Campbell CD, Sorenson SJ, Zhou J (2009) Soil genomics. Nat Rev Microbiol 7:756.
https://doi.org/10.1038/nrmicro2119-c1
Singh DP, Prabha R, Yandigeri MS, Arora DK (2011) Cyanobacteria-mediated phenylpropanoids and phytohormones in rice (Oryza sativa) enhance plant growth and stress tolerance. Antonie Van Leeuwenhoek 100:557–568
Singh A, Dubey PK, Chaurasiya R, Mathur N, Kumar G, Bharati S, Abhilash PC (2018) Indian
spinach: an underutilized perennial leafy vegetable for nutritional security in developing world.
Energ Ecol Environ. https://doi.org/10.1007/s40974-018-0091-1
Singleton I, Merringto G, Colvan S, Delahunty JS (2003) The potential of soil protein-based methods to indicate metal contamination. Appl Soil Ecol 654:1–8
Sinha S, Mukherjee SK (2008) Cadmium-induced siderophore production by a high Cd-resistant
bacterial strain relieved Cd toxicity in plants through root colonization. Curr Microbiol
56:55–60
Smets W, Leff JW, Bradford MA, McCulley RL, Lebeer S, Fierer N (2016) A method for simultaneous measurement of soil bacterial abundances and community composition via 16S rRNA
gene sequencing. Soil Biol Biochem 96:145–151
Smith CJ, Osborn AM (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based
approaches in microbial ecology. FEMS Microbiol Ecol 67:6–20
Sriprang R, Hayashi M, Ono H, Takagi M, Hirata K, Murooka Y (2003) Enhanced accumulation of
Cd2+ by a Mesorhizobium sp. transformed with a gene from Arabidopsis thaliana coding for
phytochelatin synthase. Appl Environ Microbiol 69:1791–1796
Stanley CE, van der Heijden MG (2017) Microbiome-on-a-Chip: new frontiers in plant-microbiota
research. Trends Microbiol 25:610–613
Stepanauskas R (2012) Single cell genomics: an individual look at microbes. Curr Opin Microbiol
15:613–620
Sultan M, Amstislavskiy V, Risch T, Schuette M, Dökel S, Ralser M, Balzereit D, Lehrach H,
Yaspo ML (2014) Influence of RNA extraction methods and library selection schemes on
RNA-seq data. BMC Genomics 15(1):675. http://doi.org/10.1186/1471-2164-15-675
Suominen L, Jussila MM, Mäkeläinen K, Romantschuk M, Lindström K (2000) Evaluation of the
Galega–Rhizobium galegae system for the bioremediation of oil-contaminated soil. Environ
Pollut 107:239–244
Szilagyi-Zecchin VJ, Ikeda AC, Hungria M, Adamoski D, Kava-Cordeiro V, Glienke C, GalliTerasawa LV (2014) Identification and characterization of endophytic bacteria from corn (Zea
mays L.) roots with biotechnological potential in agriculture. AMB Express 4:26. https://doi.
org/10.1186/s13568-014-0026-y
Tanca A, Palomba A, Pisanu S, Deligios M, Fraumene C, Manghina V, Pagnozzi D, Addis MF,
Uzzau S (2014) A straightforward and efficient analytical pipeline for metaproteome characterization. Microbiome 10:49
Tang Y, Underwood A, Gielbert A, Woodward MJ, Petrovska L (2014) Metaproteomics analysis reveals the adaptation process for the chicken gut microbiota. Appl Environ Microbiol
80:478–485
Tao A, Pang F, Huang S, Yu G, Li B, Wang T (2014) Characterisation of endophytic Bacillus
thuringiensis strains isolated from wheat plants as biocontrol agents against wheat flag smut.
Biocontrol Sci Tech 24:901–924
References
Sharpton TJ (2014) An introduction to the analysis of shotgun metagenomic data. Front Plant Sci
5:209
Sheng X, Sun L, Huang Z, He L, Zhang W, Chen Z (2012) Promotion of growth and Cu accumulation of bio-energy crop (Zea mays) by bacteria: implications for energy plant biomass production and phytoremediation. J Environ Manag 103:58–64
Shokrall SI, Spall JL, Gibson JF, Hajibabaei M (2012) Mol Ecol 21:1794–1805
Sims D, Sudbery I, Ilott NE, Heger A, Ponting CP (2014) Sequencing depth and coverage: key
considerations in genomic analyses. Nat Rev Genet 2:121–132
Singh BK, Trivedi P (2017) Microbiome and the future for food and nutrient security.
Microb Biotechnol 10:50–53
Singh BK, Campbell CD, Sorenson SJ, Zhou J (2009) Soil genomics. Nat Rev Microbiol 7:756.
https://doi.org/10.1038/nrmicro2119-c1
Singh DP, Prabha R, Yandigeri MS, Arora DK (2011) Cyanobacteria-mediated phenylpropanoids and phytohormones in rice (Oryza sativa) enhance plant growth and stress tolerance. Antonie Van Leeuwenhoek 100:557–568
Singh A, Dubey PK, Chaurasiya R, Mathur N, Kumar G, Bharati S, Abhilash PC (2018) Indian
spinach: an underutilized perennial leafy vegetable for nutritional security in developing world.
Energ Ecol Environ. https://doi.org/10.1007/s40974-018-0091-1
Singleton I, Merringto G, Colvan S, Delahunty JS (2003) The potential of soil protein-based methods to indicate metal contamination. Appl Soil Ecol 654:1–8
Sinha S, Mukherjee SK (2008) Cadmium-induced siderophore production by a high Cd-resistant
bacterial strain relieved Cd toxicity in plants through root colonization. Curr Microbiol
56:55–60
Smets W, Leff JW, Bradford MA, McCulley RL, Lebeer S, Fierer N (2016) A method for simultaneous measurement of soil bacterial abundances and community composition via 16S rRNA
gene sequencing. Soil Biol Biochem 96:145–151
Smith CJ, Osborn AM (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based
approaches in microbial ecology. FEMS Microbiol Ecol 67:6–20
Sriprang R, Hayashi M, Ono H, Takagi M, Hirata K, Murooka Y (2003) Enhanced accumulation of
Cd2+ by a Mesorhizobium sp. transformed with a gene from Arabidopsis thaliana coding for
phytochelatin synthase. Appl Environ Microbiol 69:1791–1796
Stanley CE, van der Heijden MG (2017) Microbiome-on-a-Chip: new frontiers in plant-microbiota
research. Trends Microbiol 25:610–613
Stepanauskas R (2012) Single cell genomics: an individual look at microbes. Curr Opin Microbiol
15:613–620
Sultan M, Amstislavskiy V, Risch T, Schuette M, Dökel S, Ralser M, Balzereit D, Lehrach H,
Yaspo ML (2014) Influence of RNA extraction methods and library selection schemes on
RNA-seq data. BMC Genomics 15(1):675. http://doi.org/10.1186/1471-2164-15-675
Suominen L, Jussila MM, Mäkeläinen K, Romantschuk M, Lindström K (2000) Evaluation of the
Galega–Rhizobium galegae system for the bioremediation of oil-contaminated soil. Environ
Pollut 107:239–244
Szilagyi-Zecchin VJ, Ikeda AC, Hungria M, Adamoski D, Kava-Cordeiro V, Glienke C, GalliTerasawa LV (2014) Identification and characterization of endophytic bacteria from corn (Zea
mays L.) roots with biotechnological potential in agriculture. AMB Express 4:26. https://doi.
org/10.1186/s13568-014-0026-y
Tanca A, Palomba A, Pisanu S, Deligios M, Fraumene C, Manghina V, Pagnozzi D, Addis MF,
Uzzau S (2014) A straightforward and efficient analytical pipeline for metaproteome characterization. Microbiome 10:49
Tang Y, Underwood A, Gielbert A, Woodward MJ, Petrovska L (2014) Metaproteomics analysis reveals the adaptation process for the chicken gut microbiota. Appl Environ Microbiol
80:478–485
Tao A, Pang F, Huang S, Yu G, Li B, Wang T (2014) Characterisation of endophytic Bacillus
thuringiensis strains isolated from wheat plants as biocontrol agents against wheat flag smut.
Biocontrol Sci Tech 24:901–924
References