89
Liu Y, Wang P, Crowley D, Liu X, Chen J, Li L, Zheng J, Zhang X, Zheng J, Pan G (2016a)
Methanogenic abundance and changes in community structure along a rice soil chronosequence from east China. Eur J Soil Sci. https://doi.org/10.1111/ejss.12348
Liu Y, Yang D, Zhang N, Chen L, Cui Z, Shen Q, Zhang R (2016b) Characterization of uncultured
genome fragment from soil metagenomic library exposed rare mismatch of internal tetranucleotide frequency. Front Microbiol 7:2081
Lovett M (2013) The applications of single-cell genomics. Hum Mol Genet 22:R22–R26
Lucas JA, García-Cristobal J, Bonilla A, Ramos B, Gutierrez-Mañero J (2014) Beneficial rhizobacteria from rice rhizosphere confers high protection against biotic and abiotic stress inducing
systemic resistance in rice seedlings. Plant Physiol Biochem 82:44–53
Lukow T, Dunceld PF, Liesack W (2000) Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with
transgenic and non-transgenic potato plants. FEMS Microbiol Ecol 32:241–247
Luo C, Zhou H, Wang X, Zhang R, Xiang Y (2014) Bacillomycin L and surfactin contribute synergistically to the phenotypic features of Bacillus subtilis 916 and the biocontrol of rice sheath
blight induced by Rhizoctonia solani. Appl Microbiol Biotechnol. https://doi.org/10.1007/
s00253-014-6195-4
Lupwayi NZ, Lamey FJ, Blackshaw RE, Kanashiro DA, Pearson DC (2017) Phospholipid fatty
acid biomarkers show positive soil microbial community responses to conservation soil management of irrigated crop rotations. Soil Tillage Res 168:1–10
Ma Y, Rajkumar M, Freitas H (2009) Isolation and characterization of Ni mobilizing PGPB from
serpentine soils and their potential in promoting plant growth and Ni accumulation by Brassica
spp. Chemosphere 75:719–725
Ma Y, Rajkumar M, Zhang C, Freitas H (2016) Inoculation of Brassica oxyrrhina with plant growth
promoting bacteria for the improvement of heavy metal phytoremediation under drought conditions. J Hazard Mater 320:36–44
Macaulay IC, Voet T (2014) Single cell genomics: advances and future perspectives. PLoS Genet
10:e1004126
Macosko EZ et al (2015) Highly parallel genome-wide expression profiling of individual cells
using nanoliter droplets. Cell 161:1202–1214
Maldonado-Mendoza IE, Galindo-flores H, Lopez-meyer M (2009) An introduction to metagenomics. In: Chauhan AK, Varma A (eds) A textbook of molecular biotechnology. I. K. International
Publishing House Pvt Ltd, New Delhi
Malghani S, Reim A, Von Fischer J, Conrad R, Kuebler K, Trumbore SE (2016) Soil methanotroph
abundance and community composition are not influenced by substrate availability in laboratory incubations. Soil Biol Biochem 101:184–194
Manefield M, Whiteley AS, Griffiths RI, Bailey MJ (2002) RNA stable isotope probing, a novel
means of linking microbial community function to phylogeny. Appl Environ Microbiol
68:5367–5373
Mann M, Pandey A (2001) Use of mass spectrometry-derived data to annotate nucleotide
and protein sequence databases. Trends Biochem Sei 26:54–61. https://doi.org/10.1016/
S0968-0004(00)01726-6
Marco-Sola S, Sammeth M, Guigó R, Ribeca P (2012) The GEM mapper: fast, accurate and
versatile alignment by filtration. Nat Methods 9:1185–1188
Marcy Y, Ishoey T, Lasken RS, Stockwell TB, Walenz BP, Halpern AL, Beeson KY, Goldberg
SMD, Quake SR (2007) Nanoliter reactors improve multiple displacement amplification of
genomes from single cells. PLoS Genet 3:1702–1708
Markowicz A, Cycoń M, Piotrowska-Seget Z (2016) Microbial community structure and
diversity in long-term hydrocarbon and heavy metal contaminated soils. Int J Environ Res
10:321–332
Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Grechkin Y, Ratner A, Jacob B, Pati
A, Huntemann M, Liolios K, Pagani I, Anderson I, Mavromatis K, Ivanova NN, Kyrpides
References
Liu Y, Wang P, Crowley D, Liu X, Chen J, Li L, Zheng J, Zhang X, Zheng J, Pan G (2016a)
Methanogenic abundance and changes in community structure along a rice soil chronosequence from east China. Eur J Soil Sci. https://doi.org/10.1111/ejss.12348
Liu Y, Yang D, Zhang N, Chen L, Cui Z, Shen Q, Zhang R (2016b) Characterization of uncultured
genome fragment from soil metagenomic library exposed rare mismatch of internal tetranucleotide frequency. Front Microbiol 7:2081
Lovett M (2013) The applications of single-cell genomics. Hum Mol Genet 22:R22–R26
Lucas JA, García-Cristobal J, Bonilla A, Ramos B, Gutierrez-Mañero J (2014) Beneficial rhizobacteria from rice rhizosphere confers high protection against biotic and abiotic stress inducing
systemic resistance in rice seedlings. Plant Physiol Biochem 82:44–53
Lukow T, Dunceld PF, Liesack W (2000) Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with
transgenic and non-transgenic potato plants. FEMS Microbiol Ecol 32:241–247
Luo C, Zhou H, Wang X, Zhang R, Xiang Y (2014) Bacillomycin L and surfactin contribute synergistically to the phenotypic features of Bacillus subtilis 916 and the biocontrol of rice sheath
blight induced by Rhizoctonia solani. Appl Microbiol Biotechnol. https://doi.org/10.1007/
s00253-014-6195-4
Lupwayi NZ, Lamey FJ, Blackshaw RE, Kanashiro DA, Pearson DC (2017) Phospholipid fatty
acid biomarkers show positive soil microbial community responses to conservation soil management of irrigated crop rotations. Soil Tillage Res 168:1–10
Ma Y, Rajkumar M, Freitas H (2009) Isolation and characterization of Ni mobilizing PGPB from
serpentine soils and their potential in promoting plant growth and Ni accumulation by Brassica
spp. Chemosphere 75:719–725
Ma Y, Rajkumar M, Zhang C, Freitas H (2016) Inoculation of Brassica oxyrrhina with plant growth
promoting bacteria for the improvement of heavy metal phytoremediation under drought conditions. J Hazard Mater 320:36–44
Macaulay IC, Voet T (2014) Single cell genomics: advances and future perspectives. PLoS Genet
10:e1004126
Macosko EZ et al (2015) Highly parallel genome-wide expression profiling of individual cells
using nanoliter droplets. Cell 161:1202–1214
Maldonado-Mendoza IE, Galindo-flores H, Lopez-meyer M (2009) An introduction to metagenomics. In: Chauhan AK, Varma A (eds) A textbook of molecular biotechnology. I. K. International
Publishing House Pvt Ltd, New Delhi
Malghani S, Reim A, Von Fischer J, Conrad R, Kuebler K, Trumbore SE (2016) Soil methanotroph
abundance and community composition are not influenced by substrate availability in laboratory incubations. Soil Biol Biochem 101:184–194
Manefield M, Whiteley AS, Griffiths RI, Bailey MJ (2002) RNA stable isotope probing, a novel
means of linking microbial community function to phylogeny. Appl Environ Microbiol
68:5367–5373
Mann M, Pandey A (2001) Use of mass spectrometry-derived data to annotate nucleotide
and protein sequence databases. Trends Biochem Sei 26:54–61. https://doi.org/10.1016/
S0968-0004(00)01726-6
Marco-Sola S, Sammeth M, Guigó R, Ribeca P (2012) The GEM mapper: fast, accurate and
versatile alignment by filtration. Nat Methods 9:1185–1188
Marcy Y, Ishoey T, Lasken RS, Stockwell TB, Walenz BP, Halpern AL, Beeson KY, Goldberg
SMD, Quake SR (2007) Nanoliter reactors improve multiple displacement amplification of
genomes from single cells. PLoS Genet 3:1702–1708
Markowicz A, Cycoń M, Piotrowska-Seget Z (2016) Microbial community structure and
diversity in long-term hydrocarbon and heavy metal contaminated soils. Int J Environ Res
10:321–332
Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Grechkin Y, Ratner A, Jacob B, Pati
A, Huntemann M, Liolios K, Pagani I, Anderson I, Mavromatis K, Ivanova NN, Kyrpides
References