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Moore W, Patterson A, Loranger B, Moore J,
Neves C, Macdonald D, Tarkowska A,
Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR (2010) Metadata matters: access to
image data in the real world. J Cell Biol 189
(5):777–782. https://doi.org/10.1083/jcb.
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A pyramid approach to subpixel registration
based on intensity. IEEE Trans Image Process
7(1):27–41.
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20010301)220:3<284::AID-DVDY1102>3.
0.CO;2-5
30. Benazeraf B, Beaupeux M, Tchernookov M,
Wallingford A, Salisbury T, Shirtz A, Shirtz A,
Huss D, Pourquie O, Francois P, Lansford R
(2017) Multi-scale quantification of tissue
behavior during amniote embryo axis elongation. Development 144(23):4462–4472.
https://doi.org/10.1242/dev.150557
31. Benazeraf B, Francois P, Baker RE, Denans N,
Little CD, Pourquie O (2010) A random cell
motility gradient downstream of FGF controls
elongation of an amniote embryo. Nature 466
(7303):248–252. https://doi.org/10.1038/
nature09151
32. Saade M, Gutierrez-Vallejo I, Le Dreau G,
Rabadan MA, Miguez DG, Buceta J, Marti E
(2013) Sonic hedgehog signaling switches the
mode of division in the developing nervous
system. Cell Rep 4(3):492–503. https://doi.
org/10.1016/j.celrep.2013.06.038
33. Uchikawa M, Ishida Y, Takemoto T,
Kamachi Y, Kondoh H (2003) Functional analysis of chicken Sox2 enhancers highlights an
array of diverse regulatory elements that are
conserved in mammals. Dev Cell 4
(4):509–519
34. Le Dreau G, Saade M, Gutierrez-Vallejo I,
Marti E (2014) The strength of SMAD1/5
activity determines the mode of stem cell division in the developing spinal cord. J Cell Biol
204(4):591–605. https://doi.org/10.1083/
jcb.201307031
35. Rios AC, Denans N, Marcelle C (2010) Realtime observation of Wnt beta-catenin signaling
in the chick embryo. Dev Dyn 239
(1):346–353. https://doi.org/10.1002/dvdy.
22174
36. Serralbo O, Marcelle C (2014) Migrating cells
mediate long-range WNT signaling. Development 141(10):2057–2063. https://doi.org/
10.1242/dev.107656
37. Momose T, Tonegawa A, Takeuchi J,
Ogawa H, Umesono K, Yasuda K (1999) Efficient targeting of gene expression in chick
embryos by microelectroporation. Develop
Growth Differ 41(3):335–344
38. Yasuda K, Momose T, Takahashi Y (2000)
Applications of microelectroporation for studies of chick embryogenesis. Develop Growth
Differ 42(3):203–206
39. Rueden CT, Schindelin J, Hiner MC, DeZonia
BE, Walter AE, Arena ET, Eliceiri KW (2017)
ImageJ2: ImageJ for the next generation of
scientific image data. BMC Bioinformatics 18
(1):529. https://doi.org/10.1186/s12859017-1934-z
40. Schindelin J, Arganda-Carreras I, Frise E,
Kaynig V, Longair M, Pietzsch T, Preibisch S,
Rueden C, Saalfeld S, Schmid B, Tinevez JY,
White DJ, Hartenstein V, Eliceiri K,
Tomancak P, Cardona A (2012) Fiji: an opensource platform for biological-image analysis.
Nat Methods 9(7):676–682. https://doi.org/
10.1038/nmeth.2019
41. Linkert M, Rueden CT, Allan C, Burel JM,
Moore W, Patterson A, Loranger B, Moore J,
Neves C, Macdonald D, Tarkowska A,
Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR (2010) Metadata matters: access to
image data in the real world. J Cell Biol 189
(5):777–782. https://doi.org/10.1083/jcb.
201004104
42. Thevenaz P, Ruttimann UE, Unser M (1998)
A pyramid approach to subpixel registration
based on intensity. IEEE Trans Image Process
7(1):27–41.
https://doi.org/10.1109/83.
650848
43. Preibisch S, Saalfeld S, Tomancak P (2009)
Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinformatics 25
(11):1463–1465. https://doi.org/10.1093/
bioinformatics/btp184
In vivo Analysis of the MET During Secondary Neurulation
197