4 Notes
1. Summary of submission types and categories
The relationship between the presets, projects, and files are
shown in Table 2. Presets are stored in the database for each
user and are reusable.
2. Changes in the submitted data and information
Only the following operations can be performed on a
project whose submission has already been completed. These
operations are made available on “My page.”
(a) Revise.
(b) Change the publication date of the data.
(c) Registration of PubMed IDs.
(d) Issue a URL for the preview page.
Acknowledgments
The jPOST team would like to thank all the data submitters and
collaborators for their contributions and the members of the PX
consortium for their support. The jPOST repository was supported
by the Database Integration Coordination Program of the National
Bioscience Database Center (NBDC), Japan Science and Technology Agency [15650519, 18063028].
References
1. Vizcaı ´no JA, Deutsch EW, Wang R et al (2014)
ProteomeXchange
provides
globally
coordinated proteomics data submission and
dissemination. Nat Biotechnol 32:223–226
Table 2
Submission types accepted in the jPOST repository
Submission
type
Complete submission
Partial submission
Target data MS data; in the case of HPP (Human
Proteome Project) related data, users must
use the option of Complete submission
MS data; in the cases where the
requirements for “Complete
submission” are not satisfied
File
Required: Raw data, Peak list (MGF or
mzML), Search results (mzTab or
mzIdentML)
Optional: Others
Required: Raw data, search results
Optional: Peak list, others
Preset
Required: Sample, Enzyme/Mod., MS mode
Optinal: Fractionation
How to Deposit your Data in the jPOST Repository
321
1. Summary of submission types and categories
The relationship between the presets, projects, and files are
shown in Table 2. Presets are stored in the database for each
user and are reusable.
2. Changes in the submitted data and information
Only the following operations can be performed on a
project whose submission has already been completed. These
operations are made available on “My page.”
(a) Revise.
(b) Change the publication date of the data.
(c) Registration of PubMed IDs.
(d) Issue a URL for the preview page.
Acknowledgments
The jPOST team would like to thank all the data submitters and
collaborators for their contributions and the members of the PX
consortium for their support. The jPOST repository was supported
by the Database Integration Coordination Program of the National
Bioscience Database Center (NBDC), Japan Science and Technology Agency [15650519, 18063028].
References
1. Vizcaı ´no JA, Deutsch EW, Wang R et al (2014)
ProteomeXchange
provides
globally
coordinated proteomics data submission and
dissemination. Nat Biotechnol 32:223–226
Table 2
Submission types accepted in the jPOST repository
Submission
type
Complete submission
Partial submission
Target data MS data; in the case of HPP (Human
Proteome Project) related data, users must
use the option of Complete submission
MS data; in the cases where the
requirements for “Complete
submission” are not satisfied
File
Required: Raw data, Peak list (MGF or
mzML), Search results (mzTab or
mzIdentML)
Optional: Others
Required: Raw data, search results
Optional: Peak list, others
Preset
Required: Sample, Enzyme/Mod., MS mode
Optinal: Fractionation
How to Deposit your Data in the jPOST Repository
321