Wolf PG, Sessa EB, Marchant DB, Li FW, Rothfels CJ, Sigel EM, Gitzendanner MA, Visger CJ,
Banks JA, Soltis DE, Soltis PS, Pryer KM, Der JP (2015) An exploration into fern genome
space. Genome Biol Evol 7(9):2533–2544
Wong S, Butler G, Wolfe KH (2002) Gene order evolution and paleopolyploidy in hemiascomycete
yeasts. Proc Natl Acad Sci U S A 99(14):9272–9277
Woodcock CL, Ghosh RP (2010) Chromatin higher-order structure and dynamics. Cold Spring
Harb Perspect Biol 2(5):a000596
Worden AZ, Lee JH, Mock T, Rouze P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML,
Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, McDonald
SM, Parker MS, Rombauts S, Salamov A, Von Dassow P, Badger JH, Coutinho PM, Demir E,
Dubchak I, Gentemann C, Eikrem W, Gready JE, John U, Lanier W, Lindquist EA, Lucas S,
Mayer KF, Moreau H, Not F, Otillar R, Panaud O, Pangilinan J, Paulsen I, Piegu B, Poliakov A,
Robbens S, Schmutz J, Toulza E, Wyss T, Zelensky A, Zhou K, Armbrust EV, Bhattacharya D,
Goodenough UW, Van de Peer Y, Grigoriev IV (2009) Green evolution and dynamic
adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 324
(5924):268–272
Woycicki R, Witkowicz J, Gawronski P, Dabrowska J, Lomsadze A, Pawelkowicz M, Siedlecka E,
Yagi K, Plader W, Seroczynska A, Smiech M, Gutman W, Niemirowicz-Szczytt K,
Bartoszewski G, Tagashira N, Hoshi Y, Borodovsky M, Karpinski S, Malepszy S, Przybecki
Z (2011) The genome sequence of the North-European cucumber (Cucumis sativus L.) unravels
evolutionary adaptation mechanisms in plants. PLoS One 6(7):e22728
Wu Y, Kikuchi S, Yan H, Zhang W, Rosenbaum H, Iniguez AL, Jiang J (2011) Euchromatic
subdomains in rice centromeres are associated with genes and transcription. Plant Cell
23(11):4054–4064
Xu Q, Chen LL, Ruan X, Chen D, Zhu A, Chen C, Bertrand D, Jiao WB, Hao BH, Lyon MP,
Chen J, Gao S, Xing F, Lan H, Chang JW, Ge X, Lei Y, Hu Q, Miao Y, Wang L, Xiao S, Biswas
MK, Zeng W, Guo F, Cao H, Yang X, Xu XW, Cheng YJ, Xu J, Liu JH, Luo OJ, Tang Z, Guo
WW, Kuang H, Zhang HY, Roose ML, Nagarajan N, Deng XX, Ruan Y (2013) The draft
genome of sweet orange (Citrus sinensis). Nat Genet 45(1):59–66
Yan H, Jiang J (2007) Rice as a model for centromere and heterochromatin research. Chromosom
Res 15(1):77–84
Yang H, Tao Y, Zheng Z, Zhang Q, Zhou G, Sweetingham MW, Howieson JG, Li C (2013) Draft
genome sequence, and a sequence-defined genetic linkage map of the legume crop species
Lupinus angustifolius L. PLoS One 8(5):e64799
Yang K, Tian Z, Chen C, Luo L, Zhao B, Wang Z, Yu L, Li Y, Sun Y, Li W, Chen Y, Li Y,
Zhang Y, Ai D, Zhao J, Shang C, Ma Y, Wu B, Wang M, Gao L, Sun D, Zhang P, Guo F,
Wang W, Li Y, Wang J, Varshney RK, Wang J, Ling HQ, Wan P (2015) Genome sequencing of
adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and
domestication. Proc Natl Acad Sci U S A 112(43):13213–13218
Yang J, Liu D, Wang X, Ji C, Cheng F, Liu B, Hu Z, Chen S, Pental D, Ju Y, Yao P, Li X, Xie K,
Zhang J, Wang J, Liu F, Ma W, Shopan J, Zheng H, Mackenzie SA, Zhang M (2016) The
genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene
expression influencing selection. Nat Genet 48(10):1225–1232
Young ND, Debelle F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF,
Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De
Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina
MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P,
Bechner M, Bellec A, Berger A, Berges H, Bidwell S, Bisseling T, Choisne N, Couloux A,
Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C,
Gibelin C, Gish J, Goldstein S, Gonzalez AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray
SJ, Jeong DH, Jing Y, Jocker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil
SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C,
Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C,
192
D. G. Peterson and M. Arick
Banks JA, Soltis DE, Soltis PS, Pryer KM, Der JP (2015) An exploration into fern genome
space. Genome Biol Evol 7(9):2533–2544
Wong S, Butler G, Wolfe KH (2002) Gene order evolution and paleopolyploidy in hemiascomycete
yeasts. Proc Natl Acad Sci U S A 99(14):9272–9277
Woodcock CL, Ghosh RP (2010) Chromatin higher-order structure and dynamics. Cold Spring
Harb Perspect Biol 2(5):a000596
Worden AZ, Lee JH, Mock T, Rouze P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML,
Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, McDonald
SM, Parker MS, Rombauts S, Salamov A, Von Dassow P, Badger JH, Coutinho PM, Demir E,
Dubchak I, Gentemann C, Eikrem W, Gready JE, John U, Lanier W, Lindquist EA, Lucas S,
Mayer KF, Moreau H, Not F, Otillar R, Panaud O, Pangilinan J, Paulsen I, Piegu B, Poliakov A,
Robbens S, Schmutz J, Toulza E, Wyss T, Zelensky A, Zhou K, Armbrust EV, Bhattacharya D,
Goodenough UW, Van de Peer Y, Grigoriev IV (2009) Green evolution and dynamic
adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 324
(5924):268–272
Woycicki R, Witkowicz J, Gawronski P, Dabrowska J, Lomsadze A, Pawelkowicz M, Siedlecka E,
Yagi K, Plader W, Seroczynska A, Smiech M, Gutman W, Niemirowicz-Szczytt K,
Bartoszewski G, Tagashira N, Hoshi Y, Borodovsky M, Karpinski S, Malepszy S, Przybecki
Z (2011) The genome sequence of the North-European cucumber (Cucumis sativus L.) unravels
evolutionary adaptation mechanisms in plants. PLoS One 6(7):e22728
Wu Y, Kikuchi S, Yan H, Zhang W, Rosenbaum H, Iniguez AL, Jiang J (2011) Euchromatic
subdomains in rice centromeres are associated with genes and transcription. Plant Cell
23(11):4054–4064
Xu Q, Chen LL, Ruan X, Chen D, Zhu A, Chen C, Bertrand D, Jiao WB, Hao BH, Lyon MP,
Chen J, Gao S, Xing F, Lan H, Chang JW, Ge X, Lei Y, Hu Q, Miao Y, Wang L, Xiao S, Biswas
MK, Zeng W, Guo F, Cao H, Yang X, Xu XW, Cheng YJ, Xu J, Liu JH, Luo OJ, Tang Z, Guo
WW, Kuang H, Zhang HY, Roose ML, Nagarajan N, Deng XX, Ruan Y (2013) The draft
genome of sweet orange (Citrus sinensis). Nat Genet 45(1):59–66
Yan H, Jiang J (2007) Rice as a model for centromere and heterochromatin research. Chromosom
Res 15(1):77–84
Yang H, Tao Y, Zheng Z, Zhang Q, Zhou G, Sweetingham MW, Howieson JG, Li C (2013) Draft
genome sequence, and a sequence-defined genetic linkage map of the legume crop species
Lupinus angustifolius L. PLoS One 8(5):e64799
Yang K, Tian Z, Chen C, Luo L, Zhao B, Wang Z, Yu L, Li Y, Sun Y, Li W, Chen Y, Li Y,
Zhang Y, Ai D, Zhao J, Shang C, Ma Y, Wu B, Wang M, Gao L, Sun D, Zhang P, Guo F,
Wang W, Li Y, Wang J, Varshney RK, Wang J, Ling HQ, Wan P (2015) Genome sequencing of
adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and
domestication. Proc Natl Acad Sci U S A 112(43):13213–13218
Yang J, Liu D, Wang X, Ji C, Cheng F, Liu B, Hu Z, Chen S, Pental D, Ju Y, Yao P, Li X, Xie K,
Zhang J, Wang J, Liu F, Ma W, Shopan J, Zheng H, Mackenzie SA, Zhang M (2016) The
genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene
expression influencing selection. Nat Genet 48(10):1225–1232
Young ND, Debelle F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF,
Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De
Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina
MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P,
Bechner M, Bellec A, Berger A, Berges H, Bidwell S, Bisseling T, Choisne N, Couloux A,
Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C,
Gibelin C, Gish J, Goldstein S, Gonzalez AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray
SJ, Jeong DH, Jing Y, Jocker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil
SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C,
Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C,
192
D. G. Peterson and M. Arick