Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H,
Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J,
Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K,
Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ,
Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ,
Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y,
Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z, Brassica rapa Genome
Sequencing Project Consortium (2011) The genome of the mesopolyploid crop species Brassica
rapa. Nat Genet 43(10):1035–1039
Wang K, Wang Z, Li F, Ye W, Wang J, Song G, Yue Z, Cong L, Shang H, Zhu S, Zou C, Li Q,
Yuan Y, Lu C, Wei H, Gou C, Zheng Z, Yin Y, Zhang X, Liu K, Wang B, Song C, Shi N, Kohel
RJ, Percy RG, Yu JZ, Zhu YX, Wang J, Yu S (2012a) The draft genome of a diploid cotton
Gossypium raimondii. Nat Genet 44(10):1098–1103
Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, Kissinger JC,
Paterson AH (2012b) MCScanX: a toolkit for detection and evolutionary analysis of gene
synteny and collinearity. Nucleic Acids Res 40(7):e49
Wang L, Yu S, Tong C, Zhao Y, Liu Y, Song C, Zhang Y, Zhang X, Wang Y, Hua W, Li D, Li D,
Li F, Yu J, Xu C, Han X, Huang S, Tai S, Wang J, Xu X, Li Y, Liu S, Varshney RK, Wang J,
Zhang X (2014a) Genome sequencing of the high oil crop sesame provides insight into oil
biosynthesis. Genome Biol 15(2):R39
Wang W, Haberer G, Gundlach H, Glasser C, Nussbaumer T, Luo MC, Lomsadze A,
Borodovsky M, Kerstetter RA, Shanklin J, Byrant DW, Mockler TC, Appenroth KJ,
Grimwood J, Jenkins J, Chow J, Choi C, Adam C, Cao XH, Fuchs J, Schubert I, Rokhsar D,
Schmutz J, Michael TP, Mayer KF, Messing J (2014b) The Spirodela polyrhiza genome reveals
insights into its neotenous reduction fast growth and aquatic lifestyle. Nat Commun 5:3311
Wang X, Xu Y, Zhang S, Cao L, Huang Y, Cheng J, Wu G, Tian S, Chen C, Liu Y, Yu H, Yang X,
Lan H, Wang N, Wang L, Xu J, Jiang X, Xie Z, Tan M, Larkin RM, Chen LL, Ma BG, Ruan Y,
Deng X, Xu Q (2017) Genomic analyses of primitive, wild and cultivated citrus provide insights
into asexual reproduction. Nat Genet 49(5):765–772
Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H,
Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D,
Nelson DR, Ritland C, Isabel N, Jaquish B, Yanchuk A, Bousquet J, Jones SJ, MacKay J,
Birol I, Bohlmann J (2015a) Improved white spruce (Picea glauca) genome assemblies and
annotation of large gene families of conifer terpenoid and phenolic defense metabolism. Plant J
83(2):189–212
Warren RL, Yang C, Vandervalk BP, Behsaz B, Lagman A, Jones SJ, Birol I (2015b) LINKS:
scalable, alignment-free scaffolding of draft genomes with long reads. GigaScience 4:35
Wegrzyn JL, Lin BY, Zieve JJ, Dougherty WM, Martínez-García PJ, Koriabine M, Holtz-Morris A,
deJong P, Crepeau M, Langley CH, Puiu D, Salzberg SL, Neale DB, Stevens KA (2013)
Insights into the loblolly pine genome: characterization of BAC and fosmid sequences. PLoS
One 8(9):e72439
Wetterstrand KA (2017) DNA sequencing costs: data from the NHGRI genome sequencing
program (GSP). www.genome.gov/sequencingcostsdata. Accessed 20 Dec 2017
Willing EM, Rawat V, Mandakova T, Maumus F, James GV, Nordstrom KJ, Becker C,
Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S,
Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C,
Mateos I, Piednoel M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernandez R, Schuster SC,
Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H,
Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K (2015) Genome expansion of
Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nat
Plants 1:14023
Wilson RH, Coverley D (2013) Relationship between DNA replication and the nuclear matrix.
Genes Cells 18(1):17–31
Sequencing Plant Genomes
191
Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J,
Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K,
Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ,
Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ,
Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y,
Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z, Brassica rapa Genome
Sequencing Project Consortium (2011) The genome of the mesopolyploid crop species Brassica
rapa. Nat Genet 43(10):1035–1039
Wang K, Wang Z, Li F, Ye W, Wang J, Song G, Yue Z, Cong L, Shang H, Zhu S, Zou C, Li Q,
Yuan Y, Lu C, Wei H, Gou C, Zheng Z, Yin Y, Zhang X, Liu K, Wang B, Song C, Shi N, Kohel
RJ, Percy RG, Yu JZ, Zhu YX, Wang J, Yu S (2012a) The draft genome of a diploid cotton
Gossypium raimondii. Nat Genet 44(10):1098–1103
Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, Kissinger JC,
Paterson AH (2012b) MCScanX: a toolkit for detection and evolutionary analysis of gene
synteny and collinearity. Nucleic Acids Res 40(7):e49
Wang L, Yu S, Tong C, Zhao Y, Liu Y, Song C, Zhang Y, Zhang X, Wang Y, Hua W, Li D, Li D,
Li F, Yu J, Xu C, Han X, Huang S, Tai S, Wang J, Xu X, Li Y, Liu S, Varshney RK, Wang J,
Zhang X (2014a) Genome sequencing of the high oil crop sesame provides insight into oil
biosynthesis. Genome Biol 15(2):R39
Wang W, Haberer G, Gundlach H, Glasser C, Nussbaumer T, Luo MC, Lomsadze A,
Borodovsky M, Kerstetter RA, Shanklin J, Byrant DW, Mockler TC, Appenroth KJ,
Grimwood J, Jenkins J, Chow J, Choi C, Adam C, Cao XH, Fuchs J, Schubert I, Rokhsar D,
Schmutz J, Michael TP, Mayer KF, Messing J (2014b) The Spirodela polyrhiza genome reveals
insights into its neotenous reduction fast growth and aquatic lifestyle. Nat Commun 5:3311
Wang X, Xu Y, Zhang S, Cao L, Huang Y, Cheng J, Wu G, Tian S, Chen C, Liu Y, Yu H, Yang X,
Lan H, Wang N, Wang L, Xu J, Jiang X, Xie Z, Tan M, Larkin RM, Chen LL, Ma BG, Ruan Y,
Deng X, Xu Q (2017) Genomic analyses of primitive, wild and cultivated citrus provide insights
into asexual reproduction. Nat Genet 49(5):765–772
Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H,
Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D,
Nelson DR, Ritland C, Isabel N, Jaquish B, Yanchuk A, Bousquet J, Jones SJ, MacKay J,
Birol I, Bohlmann J (2015a) Improved white spruce (Picea glauca) genome assemblies and
annotation of large gene families of conifer terpenoid and phenolic defense metabolism. Plant J
83(2):189–212
Warren RL, Yang C, Vandervalk BP, Behsaz B, Lagman A, Jones SJ, Birol I (2015b) LINKS:
scalable, alignment-free scaffolding of draft genomes with long reads. GigaScience 4:35
Wegrzyn JL, Lin BY, Zieve JJ, Dougherty WM, Martínez-García PJ, Koriabine M, Holtz-Morris A,
deJong P, Crepeau M, Langley CH, Puiu D, Salzberg SL, Neale DB, Stevens KA (2013)
Insights into the loblolly pine genome: characterization of BAC and fosmid sequences. PLoS
One 8(9):e72439
Wetterstrand KA (2017) DNA sequencing costs: data from the NHGRI genome sequencing
program (GSP). www.genome.gov/sequencingcostsdata. Accessed 20 Dec 2017
Willing EM, Rawat V, Mandakova T, Maumus F, James GV, Nordstrom KJ, Becker C,
Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S,
Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C,
Mateos I, Piednoel M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernandez R, Schuster SC,
Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H,
Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K (2015) Genome expansion of
Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nat
Plants 1:14023
Wilson RH, Coverley D (2013) Relationship between DNA replication and the nuclear matrix.
Genes Cells 18(1):17–31
Sequencing Plant Genomes
191