that are involved in the production of a cell/organism, especially a multicellular
organism with many different tissue types, is also a tall order, but it is part of the
frontier made more readily explorable by genome sequence maps.
References
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Brugerolle G, Fensome RA, Fredericq S, James TY, Karpov S, Kugrens P, Krug J, Lane CE,
Lewis LA, Lodge J, Lynn DH, Mann DG, McCourt RM, Mendoza L, Moestrup O,
Mozley-Standridge SE, Nerad TA, Shearer CA, Smirnov AV, Spiegel FW, Taylor MF (2005)
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists.
J Eukaryot Microbiol 52(5):399–451
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool.
J Mol Biol 215(3):403–410
Amborella Genome Project (2013) The Amborella genome and the evolution of flowering plants.
Science 342(6165):1241089
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant
Arabidopsis thaliana. Nature 408(6814):796–815
Aronesty E (2013) Comparison of sequence utility programs. Open Bioinformatics J 7:1–8
Avery OT, Macleod CM, McCarty M (1944) Studies on the chemical nature of the substance
inducing transformation of pneumococcal types: induction of transformation by a
desoxyribonucleic acid fraction isolated from Pneumococcus type III. J Exp Med 79
(2):137–158
Avni R, Nave M, Barad O, Baruch K, Twardziok SO, Gundlach H, Hale I, Mascher M,
Spannagl M, Wiebe K, Jordan KW, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G,
Himmelbach A, MacLachlan RP, Sharpe AG, Fritz A, Ben-David R, Budak H, Fahima T,
Korol A, Faris JD, Hernandez A, Mikel MA, Levy AA, Steffenson B, Maccaferri M,
Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M,
Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz DA, Mayer KFX, Stein N,
Ronen G, Peleg Z, Pozniak CJ, Akhunov ED, Distelfeld A (2017) Wild emmer genome
architecture and diversity elucidate wheat evolution and domestication. Science 357
(6346):93–97
Awika JM (2011) Major cereal grains production and use around the world. Am Chem Soc
1089:1–13
Babraham Bioinformatics (2016) Fastqc a quality control tool for high throughput sequence data.
v0.11.5. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. Accessed 8 June 2017
Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Briere C, Owens GL,
Carrere S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, Bellec A,
Berard A, Berges H, Blanchet N, Boniface MC, Brunel D, Catrice O, Chaidir N, Claudel C,
Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp SJ, Lai Z, Le Paslier MC,
Lippi Y, Lorenzon L, Mandel JR, Marage G, Marchand G, Marquand E, Bret-Mestries E,
Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T,
Thomas J, Vandecasteele C, Vares D, Vear F, Vautrin S, Crespi M, Mangin B, Burke JM,
Salse J, Munos S, Vincourt P, Rieseberg LH, Langlade NB (2017) The sunflower genome
provides insights into oil metabolism, flowering and Asterid evolution. Nature 546
(7656):148–152
Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N,
Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL,
Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M,
Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L,
Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol
Sequencing Plant Genomes
175
organism with many different tissue types, is also a tall order, but it is part of the
frontier made more readily explorable by genome sequence maps.
References
Adl SM, Simpson AG, Farmer MA, Andersen RA, Anderson OR, Barta JR, Bowser SS,
Brugerolle G, Fensome RA, Fredericq S, James TY, Karpov S, Kugrens P, Krug J, Lane CE,
Lewis LA, Lodge J, Lynn DH, Mann DG, McCourt RM, Mendoza L, Moestrup O,
Mozley-Standridge SE, Nerad TA, Shearer CA, Smirnov AV, Spiegel FW, Taylor MF (2005)
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists.
J Eukaryot Microbiol 52(5):399–451
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool.
J Mol Biol 215(3):403–410
Amborella Genome Project (2013) The Amborella genome and the evolution of flowering plants.
Science 342(6165):1241089
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant
Arabidopsis thaliana. Nature 408(6814):796–815
Aronesty E (2013) Comparison of sequence utility programs. Open Bioinformatics J 7:1–8
Avery OT, Macleod CM, McCarty M (1944) Studies on the chemical nature of the substance
inducing transformation of pneumococcal types: induction of transformation by a
desoxyribonucleic acid fraction isolated from Pneumococcus type III. J Exp Med 79
(2):137–158
Avni R, Nave M, Barad O, Baruch K, Twardziok SO, Gundlach H, Hale I, Mascher M,
Spannagl M, Wiebe K, Jordan KW, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G,
Himmelbach A, MacLachlan RP, Sharpe AG, Fritz A, Ben-David R, Budak H, Fahima T,
Korol A, Faris JD, Hernandez A, Mikel MA, Levy AA, Steffenson B, Maccaferri M,
Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M,
Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz DA, Mayer KFX, Stein N,
Ronen G, Peleg Z, Pozniak CJ, Akhunov ED, Distelfeld A (2017) Wild emmer genome
architecture and diversity elucidate wheat evolution and domestication. Science 357
(6346):93–97
Awika JM (2011) Major cereal grains production and use around the world. Am Chem Soc
1089:1–13
Babraham Bioinformatics (2016) Fastqc a quality control tool for high throughput sequence data.
v0.11.5. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. Accessed 8 June 2017
Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Briere C, Owens GL,
Carrere S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, Bellec A,
Berard A, Berges H, Blanchet N, Boniface MC, Brunel D, Catrice O, Chaidir N, Claudel C,
Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp SJ, Lai Z, Le Paslier MC,
Lippi Y, Lorenzon L, Mandel JR, Marage G, Marchand G, Marquand E, Bret-Mestries E,
Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T,
Thomas J, Vandecasteele C, Vares D, Vear F, Vautrin S, Crespi M, Mangin B, Burke JM,
Salse J, Munos S, Vincourt P, Rieseberg LH, Langlade NB (2017) The sunflower genome
provides insights into oil metabolism, flowering and Asterid evolution. Nature 546
(7656):148–152
Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N,
Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL,
Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M,
Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L,
Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol
Sequencing Plant Genomes
175