Johnson KL, Cassin AM, Lonsdale A, Bacic A, Doblin MS, Schultz CJ (2017) A motif and amino
acid bias bioinformatics pipeline to identify hydroxyproline-rich glycoproteins. Plant Physiol
174:294
Kandel S, Joubert P, Doty S (2017) Bacterial endophyte colonization and distribution within plants.
Microorganisms 5:77
Katupitiya S, New PB, Elmerich C, Kennedy IR (1995a) Improved N2 fixation in 2,4-D treated
wheat roots associated with Azospirillum lipoferum: studies of colonization using reporter
genes. Soil Biol Biochem 27:447–452
Katupitiya S, Millet J, Vesk M, Viccars L, Zeman A, Lidong Z, Elmerich C, Kennedy IR (1995b) A
mutant of Azospirillum brasilense Sp7 impaired in flocculation with a modified colonization
pattern and superior nitrogen fixation in association with wheat. Appl Environ Microb
61:1987–1995
Kennedy IR, Tchan YT (1992) Biological nitrogen fixation in non-leguminous field crops: recent
advances. Plant Soil 141:93–11
Kennedy IR, Katupitiya S, Yu D, Gilchrist K, Deaker R, Pereg-Gerk L, Wood CC (1998) Prospects
for facilitated evolution of effective N2-fixing associations with cereals: comparative performance of Azospirillum brasilense Sp7-S with various free-living diazotrophs in para-nodulated
wheat. In: Malik KA, Mirza MS, Ladha JK (eds) Nitrogen fixation with non-legumes. Kluwer
Academic Publishers, Dordrecht, pp 109–124
Kennedy IR, Choudhury ATMA, Kecske’s ML (2004) Non-symbiotic bacterial diazotrophs in
crop-farming systems: can their potential for plant growth promotion be better exploited? Soil
Biol. Biochem. 2004:1229–1244
Kerff F, Amoroso A, Herman R, Sauvage E, Petrella S, Filée P, Charlier P, Joris B, Tabuchi A,
Nikolaidis N (2008) Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial
expansin that promotes root colonization. Proc. Natl. Acad. Sci. 105:16876–16881
Khamas KM, Ageron E, Grimont PAD, Kaiser P (1994) The nitrogen-fixing bacteria from Iraqi
rice-field soils. Eur J Soil Biol 30:101–106
Khan I, Masood A, Aquil A (2010) Effect of nitrogen fixing bacteria on plant growth and yield of
Brassica juncea. J Phytology 2010:25–27
Kost T, Stopnisek N, Agnoli K, Eberl L, Weisskopf L (2014) Oxalotrophy, a widespread trait of
plant-associated Burkholderia species, is involved in successful root colonization of lupin and
maize by Burkholderia phytofirmans. Front Microbiol 4:421
Ladha JK, Watanabe I (1984) Antigenic Analysis of Anabaena Azollae and Presence of Lectin in
Azolla-Anabaena Association. In: Veeger C, Newton WE (eds) Advances in nitrogen fixation
research, Advances in agricultural biotechnology, vol 4. Springer, Dordrecht. https://doi.org/10.
1007/978-94-009-6923-0_210
Ladha JK, Baraquio WL, Watanabe I (1982) Immunological techniques to identify Azospirillum
associated with rice. Can. Jour. Microbiol. 28:478–485
Lebeis SL, Paredes SH, Lundberg DS, Breakfield N, Gehring J, McDonald M, Malfatti S, Del Rio
TG, Jones CD, Tringe SG (2015) Salicylic acid modulates colonization of the root microbiome
by specific bacterial taxa. Science 349:860–864
Lee S, Pierson B, Kennedy C (2002) Genetics and biochemistry of nitrogen fixation and other
factors beneficial to host plant growth in diazotrophic endophytes. In: Vanderleyden J
(ed) Proceedings of the ninth international symposium on nitrogen fixation with non-legumes.
Katholique Universiteit, Leuven, Belgium, pp 41–42
Lee KB, Backer PD, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer
DM, Najar FZ, Wiley GB, Roe B, Binnewies TT, Ussery DW, D'Haeze W, Herder JD,
Gevers D, Vereecke D, Holsters M, Oyaizu H (2008) The genome of the versatile nitrogen
fixer Azorhizobium caulinodans ORS571. BMC Genomics 9(4):271. https://doi.org/10.1186/
1471-2164-9-271
Levy A, Gonzalez IS, Mittelviefhaus M, Clingenpeel S, Paredes SH, Miao J, Wang K,
Devescovi G, Stillman K, Monteiro F (2018) Genomic features of bacterial adaptation to plants.
Nat Genet 50:138
418
S.-C. Chun
acid bias bioinformatics pipeline to identify hydroxyproline-rich glycoproteins. Plant Physiol
174:294
Kandel S, Joubert P, Doty S (2017) Bacterial endophyte colonization and distribution within plants.
Microorganisms 5:77
Katupitiya S, New PB, Elmerich C, Kennedy IR (1995a) Improved N2 fixation in 2,4-D treated
wheat roots associated with Azospirillum lipoferum: studies of colonization using reporter
genes. Soil Biol Biochem 27:447–452
Katupitiya S, Millet J, Vesk M, Viccars L, Zeman A, Lidong Z, Elmerich C, Kennedy IR (1995b) A
mutant of Azospirillum brasilense Sp7 impaired in flocculation with a modified colonization
pattern and superior nitrogen fixation in association with wheat. Appl Environ Microb
61:1987–1995
Kennedy IR, Tchan YT (1992) Biological nitrogen fixation in non-leguminous field crops: recent
advances. Plant Soil 141:93–11
Kennedy IR, Katupitiya S, Yu D, Gilchrist K, Deaker R, Pereg-Gerk L, Wood CC (1998) Prospects
for facilitated evolution of effective N2-fixing associations with cereals: comparative performance of Azospirillum brasilense Sp7-S with various free-living diazotrophs in para-nodulated
wheat. In: Malik KA, Mirza MS, Ladha JK (eds) Nitrogen fixation with non-legumes. Kluwer
Academic Publishers, Dordrecht, pp 109–124
Kennedy IR, Choudhury ATMA, Kecske’s ML (2004) Non-symbiotic bacterial diazotrophs in
crop-farming systems: can their potential for plant growth promotion be better exploited? Soil
Biol. Biochem. 2004:1229–1244
Kerff F, Amoroso A, Herman R, Sauvage E, Petrella S, Filée P, Charlier P, Joris B, Tabuchi A,
Nikolaidis N (2008) Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial
expansin that promotes root colonization. Proc. Natl. Acad. Sci. 105:16876–16881
Khamas KM, Ageron E, Grimont PAD, Kaiser P (1994) The nitrogen-fixing bacteria from Iraqi
rice-field soils. Eur J Soil Biol 30:101–106
Khan I, Masood A, Aquil A (2010) Effect of nitrogen fixing bacteria on plant growth and yield of
Brassica juncea. J Phytology 2010:25–27
Kost T, Stopnisek N, Agnoli K, Eberl L, Weisskopf L (2014) Oxalotrophy, a widespread trait of
plant-associated Burkholderia species, is involved in successful root colonization of lupin and
maize by Burkholderia phytofirmans. Front Microbiol 4:421
Ladha JK, Watanabe I (1984) Antigenic Analysis of Anabaena Azollae and Presence of Lectin in
Azolla-Anabaena Association. In: Veeger C, Newton WE (eds) Advances in nitrogen fixation
research, Advances in agricultural biotechnology, vol 4. Springer, Dordrecht. https://doi.org/10.
1007/978-94-009-6923-0_210
Ladha JK, Baraquio WL, Watanabe I (1982) Immunological techniques to identify Azospirillum
associated with rice. Can. Jour. Microbiol. 28:478–485
Lebeis SL, Paredes SH, Lundberg DS, Breakfield N, Gehring J, McDonald M, Malfatti S, Del Rio
TG, Jones CD, Tringe SG (2015) Salicylic acid modulates colonization of the root microbiome
by specific bacterial taxa. Science 349:860–864
Lee S, Pierson B, Kennedy C (2002) Genetics and biochemistry of nitrogen fixation and other
factors beneficial to host plant growth in diazotrophic endophytes. In: Vanderleyden J
(ed) Proceedings of the ninth international symposium on nitrogen fixation with non-legumes.
Katholique Universiteit, Leuven, Belgium, pp 41–42
Lee KB, Backer PD, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer
DM, Najar FZ, Wiley GB, Roe B, Binnewies TT, Ussery DW, D'Haeze W, Herder JD,
Gevers D, Vereecke D, Holsters M, Oyaizu H (2008) The genome of the versatile nitrogen
fixer Azorhizobium caulinodans ORS571. BMC Genomics 9(4):271. https://doi.org/10.1186/
1471-2164-9-271
Levy A, Gonzalez IS, Mittelviefhaus M, Clingenpeel S, Paredes SH, Miao J, Wang K,
Devescovi G, Stillman K, Monteiro F (2018) Genomic features of bacterial adaptation to plants.
Nat Genet 50:138
418
S.-C. Chun