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GL, Medina M (2009) Bacterial diversity and white plague disease-associated community
changes in the Caribbean coral Montastraea faveolata. ISME J 3:512–521
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Evol Syst 45:471–493
Toju H, Vannette RL, Gauthier M-PL, Dhami MK, Fukami T (2018) Priority effects can persist
across floral generations in nectar microbial metacommunities. Oikos 127:345–352
Toller WW, Rowan R, Knowlton N (2001) Zooxanthellae of the Montastraea annularis species
complex: patterns of distribution of four taxa of symbiodinium on different reefs and across
depths. Biol Bull 201:348–359
Turnbaugh PJ, Gordon JI (2009) The core gut microbiome, energy balance and obesity. J Physiol
587:4153–4158
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Microbiol 110:1105–1128
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Natl Acad Sci USA 116:20591–20597
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Microbiol 70:1213–1221
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3389/fmicb.2015.00296
West AG, Waite DW, Deines P, Bourne DG, Digby A, McKenzie VJ, Taylor MW (2019) The
microbiome in threatened species conservation. Biol Conserv 229:85–98
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Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft J-U, Rainey PB, Freilich S, Schuster S,
Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C,
Klapper I, Labarthe S, Smets BF, Wang H, Soyer OS, Fellows INI (2016) Challenges in
microbial ecology: building predictive understanding of community function and dynamics.
ISME J 10:2557–2568
Wieczorek SK, Clare AS, Todd CD (1995) Inhibitory and facilitatory effects of microbial films on
settlement of Balanus amphitrite amphitrite larvae. Mar Ecol Prog Ser 119:221–228
Wisniewski M, Lindow SE, Ashworth EN (1997) Observations of ice nucleation and propagation in
plants using infrared video thermography. Plant Physiol 113:327–334
Xu J, Zhang Y, Zhang P, Trivedi P, Riera N, Wang Y, Liu X, Fan G, Tang J, Coletta-Filho HD,
Cubero J, Deng X, Ancona V, Lu Z, Zhong B, Roper MC, Capote N, Catara V, Pietersen G,
Vernière C, Al-Sadi AM, Li L, Yang F, Xu X, Wang J, Yang H, Jin T, Wang N (2018) The
structure and function of the global citrus rhizosphere microbiome. Nat Commun 9:4894
17 Diversity–Function Relationships and the Underlying Ecological Mechanisms in. . .
325
Stone BWG, Weingarten EA, Jackson CR (2018) The role of the phyllosphere microbiome in plant
health and function. Annu Plant Rev. https://doi.org/10.1002/9781119312994.apr0614
Sunagawa S, DeSantis TZ, Piceno YM, Brodie EL, DeSalvo MK, Voolstra CR, Weil E, Andersen
GL, Medina M (2009) Bacterial diversity and white plague disease-associated community
changes in the Caribbean coral Montastraea faveolata. ISME J 3:512–521
Tilman D, Isbell F, Cowles JM (2014) Biodiversity and ecosystem functioning. Annu Rev Ecol
Evol Syst 45:471–493
Toju H, Vannette RL, Gauthier M-PL, Dhami MK, Fukami T (2018) Priority effects can persist
across floral generations in nectar microbial metacommunities. Oikos 127:345–352
Toller WW, Rowan R, Knowlton N (2001) Zooxanthellae of the Montastraea annularis species
complex: patterns of distribution of four taxa of symbiodinium on different reefs and across
depths. Biol Bull 201:348–359
Turnbaugh PJ, Gordon JI (2009) The core gut microbiome, energy balance and obesity. J Physiol
587:4153–4158
Turovskiy Y, Sutyak Noll K, Chikindas ML (2011) The aetiology of bacterial vaginosis. J Appl
Microbiol 110:1105–1128
Vaishnava S, Behrendt CL, Ismail AS, Eckmann L, Hooper LV (2008) Paneth cells directly sense
gut commensals and maintain homeostasis at the intestinal host-microbial interface. Proc Natl
Acad Sci USA 105:20858–20863
Van Der Heijden MGA, Bardgett RD, Van Straalen NM (2008) The unseen majority: soil microbes
as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 11:296–310
Van der Waaij D, Berghuis-de Vries JM, Lekkerkerk-van der Wees JEC (1971) Colonization
resistance of the digestive tract in conventional and antibiotic-treated mice. J Hygiene
69:405–411
Vannette RL, Fukami T (2017) Dispersal enhances beta diversity in nectar microbes. Ecol Lett
20:901–910
van Vliet S, Doebeli M (2019) The role of multilevel selection in host microbiome evolution. Proc
Natl Acad Sci USA 116:20591–20597
Vergnon R, van Nes EH, Scheffer M (2013) Interpretation and predictions of the Emergent
neutrality model: a reply to Barabás et al. Oikos 122:1573–1575
Webster NS, Smith LD, Heyward AJ, Watts JEM, Webb RI, Blackall LL, Negri AP (2004)
Metamorphosis of a scleractinian coral in response to microbial biofilms. Appl Environ
Microbiol 70:1213–1221
Weimer PJ (2015) Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations. Front Microbiol. https://doi.org/10.
3389/fmicb.2015.00296
West AG, Waite DW, Deines P, Bourne DG, Digby A, McKenzie VJ, Taylor MW (2019) The
microbiome in threatened species conservation. Biol Conserv 229:85–98
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B,
Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft J-U, Rainey PB, Freilich S, Schuster S,
Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C,
Klapper I, Labarthe S, Smets BF, Wang H, Soyer OS, Fellows INI (2016) Challenges in
microbial ecology: building predictive understanding of community function and dynamics.
ISME J 10:2557–2568
Wieczorek SK, Clare AS, Todd CD (1995) Inhibitory and facilitatory effects of microbial films on
settlement of Balanus amphitrite amphitrite larvae. Mar Ecol Prog Ser 119:221–228
Wisniewski M, Lindow SE, Ashworth EN (1997) Observations of ice nucleation and propagation in
plants using infrared video thermography. Plant Physiol 113:327–334
Xu J, Zhang Y, Zhang P, Trivedi P, Riera N, Wang Y, Liu X, Fan G, Tang J, Coletta-Filho HD,
Cubero J, Deng X, Ancona V, Lu Z, Zhong B, Roper MC, Capote N, Catara V, Pietersen G,
Vernière C, Al-Sadi AM, Li L, Yang F, Xu X, Wang J, Yang H, Jin T, Wang N (2018) The
structure and function of the global citrus rhizosphere microbiome. Nat Commun 9:4894
17 Diversity–Function Relationships and the Underlying Ecological Mechanisms in. . .
325