Lee YK, Mazmanian SK (2010) Has the microbiota played a critical role in the evolution of the
adaptive immune system? Science 330:1768–1773
Lee K, Pan JJ, May G (2009) Endophytic Fusarium verticillioides reduces disease severity caused
by Ustilago maydis on maize. FEMS Microbiol Lett 299:31–37
Leibold MA, Chase JM, Ernest SKM (2017) Community assembly and the functioning of ecosystems: how metacommunity processes alter ecosystems attributes. Ecology. https://doi.org/10.
1002/ecy.1697
Levin SA (1992) The problem of pattern and scale in ecology: the Robert H. MacArthur Award
Lecture. Ecology 73:1943–1967
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA,
Schrenzel MD, Knight R, Gordon JI (2008a) Evolution of mammals and their gut microbes.
Science 320:1647–1651
Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI (2008b) Worlds within worlds: evolution
of the vertebrate gut microbiota. Nat Rev Microbiol 6:776–788
Lindow SE, Arny DC, Upper CD (1982) Bacterial ice nucleation: a factor in frost injury to plants.
Plant Physiol 70:1084–1089
Lindow SE, McGourty G, Elkins R (1996) Interactions of antibiotics with Pseudomonas fluorescens
strain A506 in the control of fire blight and frost injury to pear. Phytopathology 86:841–848
Longford SR, Campbell AH, Nielsen S, Case RJ, Kjelleberg S, Steinberg PD (2019) Interactions
within the microbiome alter microbial interactions with host chemical defences and affect
disease in a marine holobiont. Sci Rep 9:1363
Loreau M, Hector A (2001) Partitioning selection and complementarity in biodiversity experiments.
Nature 412:72–76
Louca S, Jacques SMS, Pires APF, Leal JS, Srivastava DS, Parfrey LW, Farjalla VF, Doebeli M
(2016a) High taxonomic variability despite stable functional structure across microbial communities. Nat Ecol Evol 1:15
Louca S, Parfrey LW, Doebeli M (2016b) Decoupling function and taxonomy in the global ocean
microbiome. Science 353:1272–1277
Martin FM, Uroz S, Barker DG (2017) Ancestral alliances: plant mutualistic symbioses with fungi
and bacteria. Science 356:eaad4501
Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL (2005) An immunomodulatory molecule of
symbiotic bacteria directs maturation of the host immune system. Cell 122:107–118
McFall-Ngai MJ (2015) The development of cooperative associations between animals and bacteria: establishing détente among domains. Am Zool 38:593–608
McFall-Ngai M, Hadfield MG, Bosch TCG, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N,
Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N,
Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M,
Sanders JG, Tautz D, Wernegreen JJ (2013) Animals in a bacterial world, a new imperative for
the life sciences. Proc Natl Acad Sci USA 110:3229–3236
McLellan CA, Turbyville TJ, Wijeratne EMK, Kerschen A, Vierling E, Queitsch C, Whitesell L,
Gunatilaka AAL (2007) A rhizosphere fungus enhances arabidopsis thermotolerance through
production of an HSP90 inhibitor. Plant Physiol 145:174–182
Meyer JL, Paul VJ, Teplitski M (2014) Community shifts in the surface microbiomes of the coral
Porites astreoides with unusual lesions. PLoS One 9:e100316
Miller ET, Svanbäck R, Bohannan BJM (2018) Microbiomes as metacommunities: understanding
host-associated microbes through metacommunity ecology. Trends Ecol Evol 33:926–935
Momose Y, Hirayama K, Itoh K (2008a) Competition for proline between indigenous Escherichia
coli and E. coli O157:H7 in gnotobiotic mice associated with infant intestinal microbiota and its
contribution to the colonization resistance against E. coli O157:H7. Antonie Van Leeuwenhoek
94:165–171
Momose Y, Hirayama K, Itoh K (2008b) Effect of organic acids on inhibition of Escherichia coli
O157:H7 colonization in gnotobiotic mice associated with infant intestinal microbiota. Antonie
Van Leeuwenhoek 93:141–149
322
C. Cuellar-Gempeler
adaptive immune system? Science 330:1768–1773
Lee K, Pan JJ, May G (2009) Endophytic Fusarium verticillioides reduces disease severity caused
by Ustilago maydis on maize. FEMS Microbiol Lett 299:31–37
Leibold MA, Chase JM, Ernest SKM (2017) Community assembly and the functioning of ecosystems: how metacommunity processes alter ecosystems attributes. Ecology. https://doi.org/10.
1002/ecy.1697
Levin SA (1992) The problem of pattern and scale in ecology: the Robert H. MacArthur Award
Lecture. Ecology 73:1943–1967
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA,
Schrenzel MD, Knight R, Gordon JI (2008a) Evolution of mammals and their gut microbes.
Science 320:1647–1651
Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI (2008b) Worlds within worlds: evolution
of the vertebrate gut microbiota. Nat Rev Microbiol 6:776–788
Lindow SE, Arny DC, Upper CD (1982) Bacterial ice nucleation: a factor in frost injury to plants.
Plant Physiol 70:1084–1089
Lindow SE, McGourty G, Elkins R (1996) Interactions of antibiotics with Pseudomonas fluorescens
strain A506 in the control of fire blight and frost injury to pear. Phytopathology 86:841–848
Longford SR, Campbell AH, Nielsen S, Case RJ, Kjelleberg S, Steinberg PD (2019) Interactions
within the microbiome alter microbial interactions with host chemical defences and affect
disease in a marine holobiont. Sci Rep 9:1363
Loreau M, Hector A (2001) Partitioning selection and complementarity in biodiversity experiments.
Nature 412:72–76
Louca S, Jacques SMS, Pires APF, Leal JS, Srivastava DS, Parfrey LW, Farjalla VF, Doebeli M
(2016a) High taxonomic variability despite stable functional structure across microbial communities. Nat Ecol Evol 1:15
Louca S, Parfrey LW, Doebeli M (2016b) Decoupling function and taxonomy in the global ocean
microbiome. Science 353:1272–1277
Martin FM, Uroz S, Barker DG (2017) Ancestral alliances: plant mutualistic symbioses with fungi
and bacteria. Science 356:eaad4501
Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL (2005) An immunomodulatory molecule of
symbiotic bacteria directs maturation of the host immune system. Cell 122:107–118
McFall-Ngai MJ (2015) The development of cooperative associations between animals and bacteria: establishing détente among domains. Am Zool 38:593–608
McFall-Ngai M, Hadfield MG, Bosch TCG, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N,
Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N,
Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M,
Sanders JG, Tautz D, Wernegreen JJ (2013) Animals in a bacterial world, a new imperative for
the life sciences. Proc Natl Acad Sci USA 110:3229–3236
McLellan CA, Turbyville TJ, Wijeratne EMK, Kerschen A, Vierling E, Queitsch C, Whitesell L,
Gunatilaka AAL (2007) A rhizosphere fungus enhances arabidopsis thermotolerance through
production of an HSP90 inhibitor. Plant Physiol 145:174–182
Meyer JL, Paul VJ, Teplitski M (2014) Community shifts in the surface microbiomes of the coral
Porites astreoides with unusual lesions. PLoS One 9:e100316
Miller ET, Svanbäck R, Bohannan BJM (2018) Microbiomes as metacommunities: understanding
host-associated microbes through metacommunity ecology. Trends Ecol Evol 33:926–935
Momose Y, Hirayama K, Itoh K (2008a) Competition for proline between indigenous Escherichia
coli and E. coli O157:H7 in gnotobiotic mice associated with infant intestinal microbiota and its
contribution to the colonization resistance against E. coli O157:H7. Antonie Van Leeuwenhoek
94:165–171
Momose Y, Hirayama K, Itoh K (2008b) Effect of organic acids on inhibition of Escherichia coli
O157:H7 colonization in gnotobiotic mice associated with infant intestinal microbiota. Antonie
Van Leeuwenhoek 93:141–149
322
C. Cuellar-Gempeler