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a local binary descriptor very fast. IEEE Trans. Pattern Anal. Mach. Intell. 34, 1281–1298
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wide-baseline stereo. Pattern Anal. Mach. Intell. IEEE Trans. 32(5), 815–830 (2010)
34. S. Leutenegger, M. Chli, R.Y. Siegwart, BRISK: binary robust invariant scalable keypoints.
In Computer Vision (ICCV), 2011 IEEE International Conference on, pp. 2548–2555 (IEEE)
(2011)
35. F. Von Hundelshausen, R. Sukthankar, D-nets: beyond patch-based image descriptors. In
Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on, pp. 2941–
2948 (IEEE) (2012)
36. S. Lanzavecchia, F. Cantele, P.L. Bellon, L. Zampighi, M. Kreman, E. Wright, G.A.
Zampighi, Conical tomography of freeze-fracture replicas: a method for the study of integral
membrane proteins inserted in phospholipid bilayers. J. Struct. Biol. 149(1), 87–98 (2005)
37. D.N. Mastronarde, Dual-axis tomography: an approach with alignment methods that preserve
resolution. J Struct. Biol. 120(3), 343–352 (1997)
38. S. Hata, H. Miyazaki, S. Miyazaki, M. Mitsuhara, M. Tanaka, K. Kaneko, K. Higashida, K.
Ikeda, H. Nakashima, S. Matsumura, and others, High-angle triple-axis specimen holder for
three-dimensional diffraction contrast imaging in transmission electron microscopy.
Ultramicroscopy. 111(8), 1168–1175 (2011)
39. C. Messaoudi, N.Garreau Loubresse, T. Boudier, P. Dupuis-Williams, S. Marco,
Multiple-axis tomography: applications to basal bodies from Paramecium tetraurelia. Biol.
Cell 98(7), 415–425 (2006)
40. J.R. Kremer, D.N. Mastronarde, J.R. McIntosh, Computer visualization of three-dimensional
image data using IMOD. J. Struct. Biol. 71–76 (1996)
41. J.A.G. Briggs, Structural biology in situ–the potential of subtomogram averaging. Curr. Opin.
Struct. Biol. 23(2), 261–267 (2013)
42. J. Frank, Three-Dimensional Electron Microscopy of Macromolecular Assemblies:
Visualization of Biological Molecules in Their Native State (Oxford Univ. Press, New York,
USA, 2006)
43. D. Castaño-Dez, M. Kudryashev, M. Arheit, H. Stahlberg, Dynamo: a flexible, user-friendly
development tool for subtomogram averaging of cryo-EM data in high-performance
computing environments. J. Struct. Biol. 178(2), 139–151 (2012)
44. A.M.B. Tanmay, J.R. Christophe, L. Jan, A.P. Lori, H.W.S. Sjors, Advances in single-particle
electron cryomicroscopy structure determination applied to sub-tomogram averaging.
Structure 23(9), 1743–1753 (2015)
45. I. Arganda-Carreras, C.O.S. Sorzano, J. Kybic, C. Ortiz de Solórzano, bUnwarpJ: consistent
and Elastic Registration in ImageJ. Methods and Applications. Proc. Conference Image J
Users-Developers, Luxembourg (2008)
46. C.O.S. Sorzano, P. Thévenaz, M. Unser, Elastic registration of biological images using
vector-spline regularization. IEEE Trans. Biomed. Eng. 52(4), 652–663 (2005)
47. C.-W. Wang, E.B. Gosno, Y.-S. Li, Fully automatic and robust 3D registration of
serial-section microscopic images. Sci. R. 5 (2015)
48. S. Saalfeld, R. Fetter, A. Cardona, P. Tomancak, Elastic volume reconstruction from series of
ultra-thin microscopy sections. Nat. Methods 9(7), 717–720 (2012)
7 Alignment of Tilt Series
207