real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol
150:1541–1555
Payne JL, Wagner A (2015) Mechanisms of mutational robustness in transcriptional regulation.
Front Genet 6:322
Petroni K, Kumimoto RW, Gnesutta N, Calvenzani V, Fornari M, Tonelli C, Holt BF, Mantovani R
(2012) The promiscuous life of plant nuclear factor Y transcription factors. Plant Cell 24
(12):4777–4792
Pilon M (2017) The copper microRNAs. New Phytol 213(3):1030–1035
Puig S, Andrés-Colás NU, García-Molina AN, Penarrubia L (2007) Copper and iron homeostasis in
Arabidopsis: responses to metal deficiencies, interactions and biotechnological applications.
Plant Cell Environ 30(3):271–290
Qu B, He X, Wang J, Zhao Y, Teng W, Shao A, Zhao X, Ma W, Wang J, Li B, Li Z (2015) A wheat
CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer
input. Plant Physiol 167(2):411–423
Ramachandran P, Carlsbecker A, Etchells JP (2016) Class III HD-ZIPs govern vascular cell fate: an
HD view on patterning and differentiation. J Exp Bot 68:55–69
Rao S, Balyan S, Jha S, Mathur S (2020) Novel insights into expansion and functional diversification of MIR169 family in tomato. Planta 251(2):55
Rausch T, Wachter A (2005) Sulfur metabolism: a versatile platform for launching defence
operations. Trends Plant Sci 10(10):503–509
Richardson AE, Barea JM, McNeill AM, Prigent-Combaret C (2009) Acquisition of phosphorus
and nitrogen in the rhizosphere and plant growth promotion by microorganisms. Plant Soil
321:305–339
Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF (2010) Control
of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development 137
(1):103–112
Roy S (2016) Function of MYB domain transcription factors in abiotic stress and epigenetic control
of stress response in plant genome. Plant Signaling Behav 11:e1117723
Rubio V, Linhares F, Solano R, Martín AC, Iglesias J, Leyva A, Paz-Ares J (2001) A conserved
MYB transcription factor involved in phosphate starvation signaling both in vascular plants and
in unicellular algae. Genes Dev 15:2122–2133
Salih H, Gong W, He S, Sun G, Sun J, Du X (2016) Genome-wide characterization and expression
analysis of MYB transcription factors in Gossypium hirsutum. BMC Genet 17:129
Schachtman DP, Shin R (2007) Nutrient sensing and signaling: NPKS. Annu Rev Plant Biol
58:47–69
Serivichyaswat PT, Susila H, Ahn JH (2017) Elongated hypocotyl 5-homolog (HYH) negatively
regulates expression of the ambient temperature-responsive microRNA gene MIR169. Front
Plant Sci 8:2087
Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS (2011) Identification of miRNAs
and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 11(1):5
Song JB, Gao S, Wang Y, Li BW, Zhang YL, Yang ZM (2016) miR394 and its target gene LCR are
involved in cold stress response in Arabidopsis. Plant Gene 5:56–64
Stief A, Altmann S, Hoffmann K, Pant BD, Scheible W, Bäurle I (2014) Arabidopsis miR156
regulates tolerance to recurring environmental stress through SPL transcription factors. Plant
Cell 26:1792–1807
Sun X, Xu L, Wang Y, Yu R, Zhu X, Luo X, Gong Y, Wang R, Limera C, Zhang K, Liu L (2015a)
Identification of novel and salt-responsive miRNAs to explore miRNA-mediated regulatory
network of salt stress response in radish (Raphanus sativus L.). BMC Genom 16(1):197
Sun XM, Fan GT, Su LY, Wang WJ, Liang ZC, Li SH, Xin HP (2015b) Identification of coldinducible microRNAs in grapevine. Front Plant Sci 6:595
Sun Q, Liu X, Yang J, Liu W, Du Q, Wang H, Fu C, Li WX (2018) MicroRNA528 affects lodging
resistance of maize by regulating lignin biosynthesis under nitrogen-luxury conditions. Mol
Plant 11(6):806–814
274
S. Rao et al.
150:1541–1555
Payne JL, Wagner A (2015) Mechanisms of mutational robustness in transcriptional regulation.
Front Genet 6:322
Petroni K, Kumimoto RW, Gnesutta N, Calvenzani V, Fornari M, Tonelli C, Holt BF, Mantovani R
(2012) The promiscuous life of plant nuclear factor Y transcription factors. Plant Cell 24
(12):4777–4792
Pilon M (2017) The copper microRNAs. New Phytol 213(3):1030–1035
Puig S, Andrés-Colás NU, García-Molina AN, Penarrubia L (2007) Copper and iron homeostasis in
Arabidopsis: responses to metal deficiencies, interactions and biotechnological applications.
Plant Cell Environ 30(3):271–290
Qu B, He X, Wang J, Zhao Y, Teng W, Shao A, Zhao X, Ma W, Wang J, Li B, Li Z (2015) A wheat
CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer
input. Plant Physiol 167(2):411–423
Ramachandran P, Carlsbecker A, Etchells JP (2016) Class III HD-ZIPs govern vascular cell fate: an
HD view on patterning and differentiation. J Exp Bot 68:55–69
Rao S, Balyan S, Jha S, Mathur S (2020) Novel insights into expansion and functional diversification of MIR169 family in tomato. Planta 251(2):55
Rausch T, Wachter A (2005) Sulfur metabolism: a versatile platform for launching defence
operations. Trends Plant Sci 10(10):503–509
Richardson AE, Barea JM, McNeill AM, Prigent-Combaret C (2009) Acquisition of phosphorus
and nitrogen in the rhizosphere and plant growth promotion by microorganisms. Plant Soil
321:305–339
Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF (2010) Control
of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development 137
(1):103–112
Roy S (2016) Function of MYB domain transcription factors in abiotic stress and epigenetic control
of stress response in plant genome. Plant Signaling Behav 11:e1117723
Rubio V, Linhares F, Solano R, Martín AC, Iglesias J, Leyva A, Paz-Ares J (2001) A conserved
MYB transcription factor involved in phosphate starvation signaling both in vascular plants and
in unicellular algae. Genes Dev 15:2122–2133
Salih H, Gong W, He S, Sun G, Sun J, Du X (2016) Genome-wide characterization and expression
analysis of MYB transcription factors in Gossypium hirsutum. BMC Genet 17:129
Schachtman DP, Shin R (2007) Nutrient sensing and signaling: NPKS. Annu Rev Plant Biol
58:47–69
Serivichyaswat PT, Susila H, Ahn JH (2017) Elongated hypocotyl 5-homolog (HYH) negatively
regulates expression of the ambient temperature-responsive microRNA gene MIR169. Front
Plant Sci 8:2087
Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS (2011) Identification of miRNAs
and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 11(1):5
Song JB, Gao S, Wang Y, Li BW, Zhang YL, Yang ZM (2016) miR394 and its target gene LCR are
involved in cold stress response in Arabidopsis. Plant Gene 5:56–64
Stief A, Altmann S, Hoffmann K, Pant BD, Scheible W, Bäurle I (2014) Arabidopsis miR156
regulates tolerance to recurring environmental stress through SPL transcription factors. Plant
Cell 26:1792–1807
Sun X, Xu L, Wang Y, Yu R, Zhu X, Luo X, Gong Y, Wang R, Limera C, Zhang K, Liu L (2015a)
Identification of novel and salt-responsive miRNAs to explore miRNA-mediated regulatory
network of salt stress response in radish (Raphanus sativus L.). BMC Genom 16(1):197
Sun XM, Fan GT, Su LY, Wang WJ, Liang ZC, Li SH, Xin HP (2015b) Identification of coldinducible microRNAs in grapevine. Front Plant Sci 6:595
Sun Q, Liu X, Yang J, Liu W, Du Q, Wang H, Fu C, Li WX (2018) MicroRNA528 affects lodging
resistance of maize by regulating lignin biosynthesis under nitrogen-luxury conditions. Mol
Plant 11(6):806–814
274
S. Rao et al.