174
C. C. V. Velloso et al.
Annapurna K, Govindasamy V, Sharma M, Ghosh A, Chikara SK (2018) Whole genome shotgun
sequence of Bacillus paralicheniformis strain KMS 80, a rhizobacterial endophyte isolated from
rice (Oryza sativa L.). 3 Biotech 8:223. https://doi.org/10.1007/s13205-018-1242-y
Assumpção LC, Lacava P, Dias ACF, Azevedo JL, Menten JOM (2009) Diversidade e potencial
biotecnológico da comunidade bacteriana endofítica de sementes de soja. Pesq Agropec Bras
44:503–510. https://doi.org/10.1590/S0100-204X2009000500010
Bahadir PS, Liaqat F, Eltem R (2018) Plant growth promoting properties of phosphate solubilizing
Bacillus species isolated from the Aegean Region of Turkey. Turk J Bot 42:183–196. https://doi.
org/10.3906/bot-1706-51
Barriuso E, Benoit P, Dubus IG (2008) Formation of pesticide nonextractable (bound) residues in
soils: magnitude, controlling factors and reversibility. Environ Sci Technol 42:1845–1854. https://
doi.org/10.1021/es7021736
Bashan Y, De-Bashan LE, Prabhu SR, Hernandez JP (2014) Advances in plant growth-promoting
bacterial inoculant technology: formulations and practical perspectives (1998–2013). Plant Soil
378:1–33. https://doi.org/10.1007/s11104-013-1956-x
Belbahri L, Chenari Bouket A, Rekik I et al (2017) Comparative genomics of Bacillus amyloliquefaciens strains reveals a core genome with traits for habitat adaptation and a secondary metabolites
rich accessory genome. Front Microbiol 8:1438. https://doi.org/10.3389/fmicb.2017.01438
Bhattacharyya D, Garladinne M, Lee YH (2015) Volatile indole produced by rhizobacterium Proteus
vulgaris JBLS202 stimulates growth of Arabidopsis thaliana through auxin, cytokinin, and
brassinosteroid pathways. J Plant Growth Regul 34:158–168. https://doi.org/10.1007/s00344014-9453-x
Blin K, Wolf T, Chevrette MG et al (2017) antiSMASH 4.0—improvements in chemistry prediction
and gene cluster boundary identification. Nucleic Acids Res 45:W36–W41. https://doi.org/10.
1093/nar/gkx319
Blom J, Kreis J, Spänig S, Juhre T, Bertelli C, Ernst C, Goesmann A (2016) EDGAR 2.0: an enhanced
software platform for comparative gene content analyses. Nucleic Acids Res 44:W22–W28.
https://doi.org/10.1093/nar/gkw255
Boddey RM, Urquiaga S, Alves BJ, Reis V (2003) Endophytic nitrogen fixation in sugarcane:
present knowledge and future applications. Plant Soil 252:139–149. https://doi.org/10.1023/A:
1024152126541
Böhm M, Hurek T, Reinhold-Hurek B (2007) Twitching motility is essential for endophytic rice
colonization by the N 2 -fixing endophyte Azoarcus sp. strain BH72. Mol Plant Microbe In 20:526–
533. https://doi.org/10.1094/MPMI-20-5-0526
Bonito G, Reynolds H, Robeson MS et al (2014) Plant host and soil origin influence fungal and
bacterial assemblages in the roots of woody plants. Mol Ecol 23:3356–3370. https://doi.org/10.
1111/mec.12821
Brooker MIH (2000) A new classification of the genus Eucalyptus L’Hér. (Myrtaceae). Aust Syst
Bot 13:79–148. https://doi.org/10.1071/SB98008
Bulgarelli D, Schlaeppi K, Spaepen S, Van Themaat EVL, Schulze-Lefert P (2013) Structure and
functions of the bacterial microbiota of plants. Annu Rev Plant Biol 64:807–838. https://doi.org/
10.1146/annurev-arplant-050312-120106
Cai X, Kang X, Xi H, Liu C, Xue Y (2016) Complete genome sequence of the endophytic biocontrol
strain Bacillus velezensis CC09. Genome Announc 4:e01048–16. https://doi.org/10.1128/gen
omeA.01048-16
Calvo P, Ormeño-Orrillo E, Martínez-Romero E, Zúñiga D (2010) Characterization of Bacillus
isolates of potato rhizosphere from andean soils of Peru and their potential PGPR characteristics.
Braz J Microbiol 41:899–906. https://doi.org/10.1590/S1517-83822010000400008
Camenzind T, Hättenschwiler S, Treseder KK, Lehmann A, Rillig MC (2017) Nutrient limitation
of soil microbial processes in tropical forests. Ecol Monogr 88(1):4–21. https://doi.org/10.1002/
ecm.1279
Cardoso I, Kuyper T (2006) Mycorrhizas and tropical soil fertility. Agr Ecosyst Environ 116:72–84.
https://doi.org/10.1016/j.agee.2006.03.011
C. C. V. Velloso et al.
Annapurna K, Govindasamy V, Sharma M, Ghosh A, Chikara SK (2018) Whole genome shotgun
sequence of Bacillus paralicheniformis strain KMS 80, a rhizobacterial endophyte isolated from
rice (Oryza sativa L.). 3 Biotech 8:223. https://doi.org/10.1007/s13205-018-1242-y
Assumpção LC, Lacava P, Dias ACF, Azevedo JL, Menten JOM (2009) Diversidade e potencial
biotecnológico da comunidade bacteriana endofítica de sementes de soja. Pesq Agropec Bras
44:503–510. https://doi.org/10.1590/S0100-204X2009000500010
Bahadir PS, Liaqat F, Eltem R (2018) Plant growth promoting properties of phosphate solubilizing
Bacillus species isolated from the Aegean Region of Turkey. Turk J Bot 42:183–196. https://doi.
org/10.3906/bot-1706-51
Barriuso E, Benoit P, Dubus IG (2008) Formation of pesticide nonextractable (bound) residues in
soils: magnitude, controlling factors and reversibility. Environ Sci Technol 42:1845–1854. https://
doi.org/10.1021/es7021736
Bashan Y, De-Bashan LE, Prabhu SR, Hernandez JP (2014) Advances in plant growth-promoting
bacterial inoculant technology: formulations and practical perspectives (1998–2013). Plant Soil
378:1–33. https://doi.org/10.1007/s11104-013-1956-x
Belbahri L, Chenari Bouket A, Rekik I et al (2017) Comparative genomics of Bacillus amyloliquefaciens strains reveals a core genome with traits for habitat adaptation and a secondary metabolites
rich accessory genome. Front Microbiol 8:1438. https://doi.org/10.3389/fmicb.2017.01438
Bhattacharyya D, Garladinne M, Lee YH (2015) Volatile indole produced by rhizobacterium Proteus
vulgaris JBLS202 stimulates growth of Arabidopsis thaliana through auxin, cytokinin, and
brassinosteroid pathways. J Plant Growth Regul 34:158–168. https://doi.org/10.1007/s00344014-9453-x
Blin K, Wolf T, Chevrette MG et al (2017) antiSMASH 4.0—improvements in chemistry prediction
and gene cluster boundary identification. Nucleic Acids Res 45:W36–W41. https://doi.org/10.
1093/nar/gkx319
Blom J, Kreis J, Spänig S, Juhre T, Bertelli C, Ernst C, Goesmann A (2016) EDGAR 2.0: an enhanced
software platform for comparative gene content analyses. Nucleic Acids Res 44:W22–W28.
https://doi.org/10.1093/nar/gkw255
Boddey RM, Urquiaga S, Alves BJ, Reis V (2003) Endophytic nitrogen fixation in sugarcane:
present knowledge and future applications. Plant Soil 252:139–149. https://doi.org/10.1023/A:
1024152126541
Böhm M, Hurek T, Reinhold-Hurek B (2007) Twitching motility is essential for endophytic rice
colonization by the N 2 -fixing endophyte Azoarcus sp. strain BH72. Mol Plant Microbe In 20:526–
533. https://doi.org/10.1094/MPMI-20-5-0526
Bonito G, Reynolds H, Robeson MS et al (2014) Plant host and soil origin influence fungal and
bacterial assemblages in the roots of woody plants. Mol Ecol 23:3356–3370. https://doi.org/10.
1111/mec.12821
Brooker MIH (2000) A new classification of the genus Eucalyptus L’Hér. (Myrtaceae). Aust Syst
Bot 13:79–148. https://doi.org/10.1071/SB98008
Bulgarelli D, Schlaeppi K, Spaepen S, Van Themaat EVL, Schulze-Lefert P (2013) Structure and
functions of the bacterial microbiota of plants. Annu Rev Plant Biol 64:807–838. https://doi.org/
10.1146/annurev-arplant-050312-120106
Cai X, Kang X, Xi H, Liu C, Xue Y (2016) Complete genome sequence of the endophytic biocontrol
strain Bacillus velezensis CC09. Genome Announc 4:e01048–16. https://doi.org/10.1128/gen
omeA.01048-16
Calvo P, Ormeño-Orrillo E, Martínez-Romero E, Zúñiga D (2010) Characterization of Bacillus
isolates of potato rhizosphere from andean soils of Peru and their potential PGPR characteristics.
Braz J Microbiol 41:899–906. https://doi.org/10.1590/S1517-83822010000400008
Camenzind T, Hättenschwiler S, Treseder KK, Lehmann A, Rillig MC (2017) Nutrient limitation
of soil microbial processes in tropical forests. Ecol Monogr 88(1):4–21. https://doi.org/10.1002/
ecm.1279
Cardoso I, Kuyper T (2006) Mycorrhizas and tropical soil fertility. Agr Ecosyst Environ 116:72–84.
https://doi.org/10.1016/j.agee.2006.03.011