36 Microarrays and DNA-Chips in the Analysis of Genetic Aberrations
483
References
Albertson, D. G., Ylstra, B., Segraves, R., Collins, c., Dairkee, S. H., Kowbel, D., Kuo, W.L., Gray, J. W., and Pinkel, D. (2000) Quantitative mapping of amplicon structure by
array CGH identifies CYP24 as a candidate oncogene. Nature Genetics 25, 144-146
Bao, P., Che, D., Lermer, N., Shi, J., Prokhorova, A., Muller, U. (1999) Microarray based
detection of single copy sequence changes in genomic DNA. American Journal of
Human Genetics. 65, A157
Beltinger, C. P., Klimek, F., and Debatin, K. M.(l997) Whole genome amplification of
single cells from clinical peripheral blood smears. Mol. Pathol. 50, 272-275
Bolzan, A. D., Paez, G. L., Bianchi, M. S., and Bianchi, N. O. (2000) Analysis oftelomeric
repeats and telomerase activity in human colon carcinoma cells with gene amplification. Cancer Genet. Cytogenet. 15, 166-170
Che, D., Bao, Y. and Muller, U.R. (2001) A novel surface and multicolor charge coupled
device-based fluorescent imaging system for DNA microarrays. J. Biomedical Optics
6, in press
Chee, M., Yang, R., Hubbell, E., Berno, A., Huang, X. C., Stern, D., Winkler, J., Lockhart,
D. J., Morris, M. S., and Fodor, S. P. A. (1996) Accessing genetic information with
high-density DNA arrays. Science 274, 610-614
Drmanac, R., Labat, I., Brukner, 1., and Crkvenjakov, R. (1989) Sequencing of megabase
plus DNA by hybridization: Theory of the Method. Genomics 4, 114-128
Drmanac, S., Kita, D., Labat, I., Hauser, B., Schmidt, c., Burczak, J. D., and Drmanac, R.
(1998) Accurate sequencing by hybridization for DNA diagnostics and individual
genomics. Nat. Biotechnol. 16, 54-58
Hughes, T.R., Mao, M. Jones A.R. et al. (2001) Expression profiling using microarrays
fabricated by an ink-jet oligonucleotide synthesizer. Nature Biotechnol. 19,342-347
Lese, C.M., Zhang ,X., Pinkel, D., Bao, P., Lermer, N., Che, D., Shi, J., Miiller, U., Ledbetter, D.H. (1999) Comparative genomic hybridization arrays: Towards a "telomere
chip". American Journal of Human Genetics. 65, A9
Monni, 0., Biirlund, M., Mousses, S., Kononen, J., Sauter, G., Heiskanen, M., Paavola,
P., Avela, K., Chen, Y., Bittner, M. L., Kallioniemi, A. (2001) Comprehensive copy
number and gene expression profIling of the 17q23 amplicon in human breast cancer. PNAS 98, 5711-5716
Muller, U.R. (2001) Microarrays for quantitative analysis of sequence copy numbers.
Clin. Applied Immunol. Rev. 1,255-265
Noordewier, MO and Warren PV. (2001) Gene expression microarrays and the integration of biological knowledge. Trends Biotechnol. 19, 412-415
Pinkel, D., Seagraves, R., Sudar, D., Clark, S., Poole, 1., Kowbel, D., Collins, C., Kuo,
W. L., Chen, c., Zhai, Y., Dairkee, S. H., Ljung, B. M., Gray, J. W., and Albertson, D. G.
(1998) High resolution analysis of DNA copy number variation using comparative
genomic hybridization to microarrays. Nature Genet. 20, 207-211
Pollack, J. R., Perou, C. M., Alizadeh, A. A., Eisen, M. B., Pergamenschikov, A., Williams, C. F., Jeffrey, S. S., Bostein, D., Brown, P. O. (1999) Genome-wide analysis of
DNA copy-number changes using cDNA microarrays. Nature Genetics. 23, 41-46
Rew, DA. (2001) DNA microarray technology in cancer research. Eur. J. Surg. Oncol.
27,504-508
Schena, M. (1996) Genome analysis with gene expression microarrays. BioEssays 18,
427-431
483
References
Albertson, D. G., Ylstra, B., Segraves, R., Collins, c., Dairkee, S. H., Kowbel, D., Kuo, W.L., Gray, J. W., and Pinkel, D. (2000) Quantitative mapping of amplicon structure by
array CGH identifies CYP24 as a candidate oncogene. Nature Genetics 25, 144-146
Bao, P., Che, D., Lermer, N., Shi, J., Prokhorova, A., Muller, U. (1999) Microarray based
detection of single copy sequence changes in genomic DNA. American Journal of
Human Genetics. 65, A157
Beltinger, C. P., Klimek, F., and Debatin, K. M.(l997) Whole genome amplification of
single cells from clinical peripheral blood smears. Mol. Pathol. 50, 272-275
Bolzan, A. D., Paez, G. L., Bianchi, M. S., and Bianchi, N. O. (2000) Analysis oftelomeric
repeats and telomerase activity in human colon carcinoma cells with gene amplification. Cancer Genet. Cytogenet. 15, 166-170
Che, D., Bao, Y. and Muller, U.R. (2001) A novel surface and multicolor charge coupled
device-based fluorescent imaging system for DNA microarrays. J. Biomedical Optics
6, in press
Chee, M., Yang, R., Hubbell, E., Berno, A., Huang, X. C., Stern, D., Winkler, J., Lockhart,
D. J., Morris, M. S., and Fodor, S. P. A. (1996) Accessing genetic information with
high-density DNA arrays. Science 274, 610-614
Drmanac, R., Labat, I., Brukner, 1., and Crkvenjakov, R. (1989) Sequencing of megabase
plus DNA by hybridization: Theory of the Method. Genomics 4, 114-128
Drmanac, S., Kita, D., Labat, I., Hauser, B., Schmidt, c., Burczak, J. D., and Drmanac, R.
(1998) Accurate sequencing by hybridization for DNA diagnostics and individual
genomics. Nat. Biotechnol. 16, 54-58
Hughes, T.R., Mao, M. Jones A.R. et al. (2001) Expression profiling using microarrays
fabricated by an ink-jet oligonucleotide synthesizer. Nature Biotechnol. 19,342-347
Lese, C.M., Zhang ,X., Pinkel, D., Bao, P., Lermer, N., Che, D., Shi, J., Miiller, U., Ledbetter, D.H. (1999) Comparative genomic hybridization arrays: Towards a "telomere
chip". American Journal of Human Genetics. 65, A9
Monni, 0., Biirlund, M., Mousses, S., Kononen, J., Sauter, G., Heiskanen, M., Paavola,
P., Avela, K., Chen, Y., Bittner, M. L., Kallioniemi, A. (2001) Comprehensive copy
number and gene expression profIling of the 17q23 amplicon in human breast cancer. PNAS 98, 5711-5716
Muller, U.R. (2001) Microarrays for quantitative analysis of sequence copy numbers.
Clin. Applied Immunol. Rev. 1,255-265
Noordewier, MO and Warren PV. (2001) Gene expression microarrays and the integration of biological knowledge. Trends Biotechnol. 19, 412-415
Pinkel, D., Seagraves, R., Sudar, D., Clark, S., Poole, 1., Kowbel, D., Collins, C., Kuo,
W. L., Chen, c., Zhai, Y., Dairkee, S. H., Ljung, B. M., Gray, J. W., and Albertson, D. G.
(1998) High resolution analysis of DNA copy number variation using comparative
genomic hybridization to microarrays. Nature Genet. 20, 207-211
Pollack, J. R., Perou, C. M., Alizadeh, A. A., Eisen, M. B., Pergamenschikov, A., Williams, C. F., Jeffrey, S. S., Bostein, D., Brown, P. O. (1999) Genome-wide analysis of
DNA copy-number changes using cDNA microarrays. Nature Genetics. 23, 41-46
Rew, DA. (2001) DNA microarray technology in cancer research. Eur. J. Surg. Oncol.
27,504-508
Schena, M. (1996) Genome analysis with gene expression microarrays. BioEssays 18,
427-431