Rudolph C, Wanner G, Huber R (2001) Natural communities of novel
Archaea and Bacteria growing in cold sulfurous springs with a stringof-pearls-like morphology. Appl Environ Microbiol 67:2336–2344
Runes HB, Jenkins JJ, Bottomley PJ (2001) Atrazine degradation by
bioaugmented sediment from constructed wetlands. Appl Microbiol
Biotechnol 57:427–432
Ryckeboer J, Mergaert J, Coosemans J, Deprins K, Swings J (2003)
Microbiological aspects of biowaste during composting in a monitored compost bin. J Appl Microbiol 94:127–137
Samanta SK, Singh OV, Jain RK (2002) Polycyclic aromatic
hydrocarbons: environmental pollution and bioremediation. Trends
Biotechnol 20:243–248
Sandmann ERIC, Loos MA (1988) Aromatic metabolism by 2,4-G
degrading Arthrobacter sp. Can J Microbiol 34:125–130
Saouter E, Turner R, Barkay T (1994) Microbial reduction of ionic
mercury for the removal of mercury from contaminated
environments. Ann N Y Acad Sci 721:423–427
Sayler GS, Ripp S (2000) Field applications of genetically engineered
microorganims for bioremediation processes. Curr Opin Biotechnol
11:286–289
Schlu ¨ter A, Szczepanowski R, Pu ¨hler A, Top EM (2007) Genomics of
IncP-1antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS Microbiol Rev 31:449–477
Schneiker S et al (2006) Genome sequence of the ubiquitous
hydrocarbon-degrading
marine
bacterium
Alcanivorax
borkumensis. Nat Biotechnol 24:997–1004
Scott C et al (2008) The enzymatic basis for pesticide bioremediation.
Indian J Microbiol 48:65–79
Scott C, Jackson CJ, Coppin CW, Mourant RG, Hilton ME, Sutherland
TD, Russell RJ, Oakeshott JG (2009) Catalytic improvement end
evolution of atrazine chlorohydrolase. Appl Environ Microbiol
75:2184–2191
Scott C, Lewis SE, Milla R, Taylor MC, Rodgers AJW, Dumsday G,
Brodie JE, Oakeshott JG, Russell RJ (2010) A free-enzyme catalyst
for the bioremediation of environmental atrazine contamination.
J Environ Manage 91:2075–2078
Seitz H-J, Sin ˜eriz F, Schink B, Conrad R (1990) Hydrogen, production
during fermentation of acetoin and acetylene by Pelobacter
acetylenicus. FEMS Microbiol Lett 71:83–88
Sen D, Van der Auwera GA, Rogers LM, Thomas CM, Brown CJ, Top
EM (2011) Broad-host-range plasmids from agricultural soils have
IncP-1 backbones with diverse accessory genes. Appl Environ
Microbiol 77:7975–7983
Sere G, Schwartz C, Ouvrard S, Sauvage C, Renat JC, Morel JL (2008)
Soil construction: a step for ecological reclamation of derelict lands.
J Soils Sediments 8:130–136
Seviour RJ, Mino T, Onuki M (2003) The microbiology of biological
phosphorus removal in activated sludge systems. FEMS Microbiol
Rev 27:99–127
Shao ZQ, Seffens W, Mulbry W, Behki RM (1995) Cloning and
expression of the s-triazine hydrolase gene (trzA) from
Rhodococcus corallinus and development of Rhodococcus recombinant strains capable of delkylating and dechlorinating the herbicide atrazine. J Bacteriol 177:5748–5755
Sharma VK, Canditelli M, Fortuna F, Cornacchia G (1997) Processing
of urban and agro-industrial residues by aerobic composting:
review. Energy Convers Manage 38:453–478
Silver S, Phung LT (2005) A bacterial view of the periodic table: genes
and proteins for toxic inorganic ions. J Ind Microbiol Biotechnol
32:587–605
Simoneit BRT, Rogge WF, Lang Q, Jaffe ´ R (2000) Molecular characterization of smoke from campfire burning of pine wood (Pinus
elliottii). Chemosphere: Global Chang Sci 2:107–122
Singh N (2003) Enhanced degradation of hexachlorocyclohexane
isomers in rhizosphere soil of Kochia sp. Bull Environ Contam
Toxicol 70:0775–0782
Singh N, Megharaj M, Kookana RS, Naidu R, Sethunathan N (2004)
Atrazine and simazine degradation in Pennisetum rhizosphere.
Chemosphere 56:257–263
Singh A, Kumar V, Srivastava J (2012) Bioremediation: for petroleum
cleanup: bioremediation: a promising tool for petroleum contamination. Lambert Academic Publishing, Sarrebruck
Slater JH, Bull AT (1982) Environmental microbiology biodegradation. Philos Trans R Soc Lond B Biol Sci 297:575–597
Smith D, Alvey S, Crowley DE (2005) Cooperative catabolic pathways
within an atrazine-degrading enrichment culture isolated from soil.
FEMS Microbiol Ecol 53:265–273
Soulas G (2003) Pesticide degradation in soils. In: Encyclopedia of
environmental microbiology. Wiley, Oxford, pp 2385–2402
Springael D, Ryngaert A, Merlin C, Toussaint A, Mergeay M (2001)
Occurrence of TN4371-related mobile elements and sequences in
chlorobiphenyl-degrading bacteria. Appl Environ Microbiol
67:42–50
Stephensons T (2000) Membrane bioreactors for wastewater treatment.
IWA Publishing, London
Stewart PS, Franklin MJ (2008) Physiological heterogeneity in
biofilms. Nat Rev Microbiol 6:199–210
Strong LC, McTavish H, Sadowsky MJ, Wackett LP (2000) Field-scale
remediation of atrazine-contaminated soil using recombinant
Escherichia coli expressing atrazine chlorohydrolase. Environ
Microbiol 2:91–98
Sulmon C, Gouesbet G, Binet F, Martin-Laurent F, El Amrani A,
Coue ´e I (2007) Soluble sugar amendment of plants enhances
phytoaccumulation of organic contaminants and phytoremediation
of contaminated soil. Environ Pollut 145:507–515
Summers AO (1992) The hard stuff: metal in bioremediation. Curr
Opin Biotechnol 3:271–276
Swannell RPJ, Lee K, McDonagh M (1996) Field evaluations of marine
oil spill bioremediation. Microbial Rev 60:342–365
Tapilatu HY, Grossi V, Acquaviva M, Militon C, Bertrand J-C, Cuny P
(2010) Isolation of hydrocarbon-degrading extremely halophilic
archaea from an uncontaminated hypersaline pond (Camargue,
France). Extremophiles 14:225–231
Tartakovsky B, Michotte A, Cadieux J-CA, Lau PCK, Hawari J, Guiot
SR (2001) Degradation of Aroclor 1242 in a single-stage coupled
anaerobic/aerobic bioreactor. Water Res 35:4323–4330
Tchobanoglous G, Burton FL, Stensel HD (2003) Wastewater
engineering: treatment and re-use. McGraw-Hall Companies,
New York
Thayer JS, Brinkman FE (1982) The biological methylation of metals
and metalloids. Adv Organomet Chem 20:313–357
Thomas JC, Berger F, Jacquier M, Bernillon D, Baud-Grasset F,
Truffaut N, Normand P, Vogel TM, Simonet P (1996) Isolation
and characterization of a novel γ-hexachlorocyclohexane-degrading
bacterium. J Bacteriol 178:6049–6055
Thompson IP, van der Gast CJ, Ciric L, Singer AC (2005)
Bioaugmentation for bioremediation: the challenge of strain selection. Environ Microbiol 7:909–915
Timmis KN (2010) Handbook of hydrocarbon and lipid microbiology.
Springer, Berlin
Timmis KN, Pieper DH (1999) Bacteria designed for bioremediation.
Trends Biotechnol 17:201–204
Topp E (2001) A comparison of three atrazine-degrading bacteria for
soil bioremediation. Biol Fert Soils 33:529–534
Topp E, Tessier L, Gregorich EG (1996) Dairy manure incorporation
stimulates rapid atrazine mineralisation in an agricultural soil. Can J
Soil Sci 76:403–409
752
J.-C. Bertrand et al.
Archaea and Bacteria growing in cold sulfurous springs with a stringof-pearls-like morphology. Appl Environ Microbiol 67:2336–2344
Runes HB, Jenkins JJ, Bottomley PJ (2001) Atrazine degradation by
bioaugmented sediment from constructed wetlands. Appl Microbiol
Biotechnol 57:427–432
Ryckeboer J, Mergaert J, Coosemans J, Deprins K, Swings J (2003)
Microbiological aspects of biowaste during composting in a monitored compost bin. J Appl Microbiol 94:127–137
Samanta SK, Singh OV, Jain RK (2002) Polycyclic aromatic
hydrocarbons: environmental pollution and bioremediation. Trends
Biotechnol 20:243–248
Sandmann ERIC, Loos MA (1988) Aromatic metabolism by 2,4-G
degrading Arthrobacter sp. Can J Microbiol 34:125–130
Saouter E, Turner R, Barkay T (1994) Microbial reduction of ionic
mercury for the removal of mercury from contaminated
environments. Ann N Y Acad Sci 721:423–427
Sayler GS, Ripp S (2000) Field applications of genetically engineered
microorganims for bioremediation processes. Curr Opin Biotechnol
11:286–289
Schlu ¨ter A, Szczepanowski R, Pu ¨hler A, Top EM (2007) Genomics of
IncP-1antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS Microbiol Rev 31:449–477
Schneiker S et al (2006) Genome sequence of the ubiquitous
hydrocarbon-degrading
marine
bacterium
Alcanivorax
borkumensis. Nat Biotechnol 24:997–1004
Scott C et al (2008) The enzymatic basis for pesticide bioremediation.
Indian J Microbiol 48:65–79
Scott C, Jackson CJ, Coppin CW, Mourant RG, Hilton ME, Sutherland
TD, Russell RJ, Oakeshott JG (2009) Catalytic improvement end
evolution of atrazine chlorohydrolase. Appl Environ Microbiol
75:2184–2191
Scott C, Lewis SE, Milla R, Taylor MC, Rodgers AJW, Dumsday G,
Brodie JE, Oakeshott JG, Russell RJ (2010) A free-enzyme catalyst
for the bioremediation of environmental atrazine contamination.
J Environ Manage 91:2075–2078
Seitz H-J, Sin ˜eriz F, Schink B, Conrad R (1990) Hydrogen, production
during fermentation of acetoin and acetylene by Pelobacter
acetylenicus. FEMS Microbiol Lett 71:83–88
Sen D, Van der Auwera GA, Rogers LM, Thomas CM, Brown CJ, Top
EM (2011) Broad-host-range plasmids from agricultural soils have
IncP-1 backbones with diverse accessory genes. Appl Environ
Microbiol 77:7975–7983
Sere G, Schwartz C, Ouvrard S, Sauvage C, Renat JC, Morel JL (2008)
Soil construction: a step for ecological reclamation of derelict lands.
J Soils Sediments 8:130–136
Seviour RJ, Mino T, Onuki M (2003) The microbiology of biological
phosphorus removal in activated sludge systems. FEMS Microbiol
Rev 27:99–127
Shao ZQ, Seffens W, Mulbry W, Behki RM (1995) Cloning and
expression of the s-triazine hydrolase gene (trzA) from
Rhodococcus corallinus and development of Rhodococcus recombinant strains capable of delkylating and dechlorinating the herbicide atrazine. J Bacteriol 177:5748–5755
Sharma VK, Canditelli M, Fortuna F, Cornacchia G (1997) Processing
of urban and agro-industrial residues by aerobic composting:
review. Energy Convers Manage 38:453–478
Silver S, Phung LT (2005) A bacterial view of the periodic table: genes
and proteins for toxic inorganic ions. J Ind Microbiol Biotechnol
32:587–605
Simoneit BRT, Rogge WF, Lang Q, Jaffe ´ R (2000) Molecular characterization of smoke from campfire burning of pine wood (Pinus
elliottii). Chemosphere: Global Chang Sci 2:107–122
Singh N (2003) Enhanced degradation of hexachlorocyclohexane
isomers in rhizosphere soil of Kochia sp. Bull Environ Contam
Toxicol 70:0775–0782
Singh N, Megharaj M, Kookana RS, Naidu R, Sethunathan N (2004)
Atrazine and simazine degradation in Pennisetum rhizosphere.
Chemosphere 56:257–263
Singh A, Kumar V, Srivastava J (2012) Bioremediation: for petroleum
cleanup: bioremediation: a promising tool for petroleum contamination. Lambert Academic Publishing, Sarrebruck
Slater JH, Bull AT (1982) Environmental microbiology biodegradation. Philos Trans R Soc Lond B Biol Sci 297:575–597
Smith D, Alvey S, Crowley DE (2005) Cooperative catabolic pathways
within an atrazine-degrading enrichment culture isolated from soil.
FEMS Microbiol Ecol 53:265–273
Soulas G (2003) Pesticide degradation in soils. In: Encyclopedia of
environmental microbiology. Wiley, Oxford, pp 2385–2402
Springael D, Ryngaert A, Merlin C, Toussaint A, Mergeay M (2001)
Occurrence of TN4371-related mobile elements and sequences in
chlorobiphenyl-degrading bacteria. Appl Environ Microbiol
67:42–50
Stephensons T (2000) Membrane bioreactors for wastewater treatment.
IWA Publishing, London
Stewart PS, Franklin MJ (2008) Physiological heterogeneity in
biofilms. Nat Rev Microbiol 6:199–210
Strong LC, McTavish H, Sadowsky MJ, Wackett LP (2000) Field-scale
remediation of atrazine-contaminated soil using recombinant
Escherichia coli expressing atrazine chlorohydrolase. Environ
Microbiol 2:91–98
Sulmon C, Gouesbet G, Binet F, Martin-Laurent F, El Amrani A,
Coue ´e I (2007) Soluble sugar amendment of plants enhances
phytoaccumulation of organic contaminants and phytoremediation
of contaminated soil. Environ Pollut 145:507–515
Summers AO (1992) The hard stuff: metal in bioremediation. Curr
Opin Biotechnol 3:271–276
Swannell RPJ, Lee K, McDonagh M (1996) Field evaluations of marine
oil spill bioremediation. Microbial Rev 60:342–365
Tapilatu HY, Grossi V, Acquaviva M, Militon C, Bertrand J-C, Cuny P
(2010) Isolation of hydrocarbon-degrading extremely halophilic
archaea from an uncontaminated hypersaline pond (Camargue,
France). Extremophiles 14:225–231
Tartakovsky B, Michotte A, Cadieux J-CA, Lau PCK, Hawari J, Guiot
SR (2001) Degradation of Aroclor 1242 in a single-stage coupled
anaerobic/aerobic bioreactor. Water Res 35:4323–4330
Tchobanoglous G, Burton FL, Stensel HD (2003) Wastewater
engineering: treatment and re-use. McGraw-Hall Companies,
New York
Thayer JS, Brinkman FE (1982) The biological methylation of metals
and metalloids. Adv Organomet Chem 20:313–357
Thomas JC, Berger F, Jacquier M, Bernillon D, Baud-Grasset F,
Truffaut N, Normand P, Vogel TM, Simonet P (1996) Isolation
and characterization of a novel γ-hexachlorocyclohexane-degrading
bacterium. J Bacteriol 178:6049–6055
Thompson IP, van der Gast CJ, Ciric L, Singer AC (2005)
Bioaugmentation for bioremediation: the challenge of strain selection. Environ Microbiol 7:909–915
Timmis KN (2010) Handbook of hydrocarbon and lipid microbiology.
Springer, Berlin
Timmis KN, Pieper DH (1999) Bacteria designed for bioremediation.
Trends Biotechnol 17:201–204
Topp E (2001) A comparison of three atrazine-degrading bacteria for
soil bioremediation. Biol Fert Soils 33:529–534
Topp E, Tessier L, Gregorich EG (1996) Dairy manure incorporation
stimulates rapid atrazine mineralisation in an agricultural soil. Can J
Soil Sci 76:403–409
752
J.-C. Bertrand et al.