Degre ´mont (2008) Me ´mento techniques de l’eau. 10
e e ´dition, tomes 1
et 2. Lavoisier, Cachan
Dejonghe W, Goris J, El Fantroussi S, Hofte M, De Vos P, Verstraete
W, Top EM (2000) Effect of dissemination of
2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on
2,4-D degradation and on bacterial community structure in two
different soil horizons. Appl Environ Microbiol 66:3297–3304
Dejonghe W, Boon N, Seghers D, Top EM, Verstraete W (2001)
Bioaugmentation of soils by increasing microbial richness: missing
links. Environ Microbiol 3:649–657
Devers M, Soulas G, Martin-Laurent F (2004) Real-time reverse transcription PCR analysis of expression of atrazine catabolism genes in
two bacterial strains isolated from soil. J Microbiol Methods 56:3–15
Devers M, Henry S, Hartmann A, Martin-Laurent F (2005) Horizontal
gene transfer of atrazine-degrading genes atz from Agrobacterium
tumefaciens St96-4 pADP1::Tn5 to bacteria of maize-cultivated
soil. Pest Manag Sci 61:870–880
Devers M, Rouard N, Martin-Laurent F (2007a) Genetic rearrangement of the atzAB atrazine-degrading gene cassette from pADP1::
Tn5 to the chromosome of Variovorax sp. MD1 and MD2. Gene
392:1–6
Devers M, El Azhari N, Udikovic- Kolic N, Martin-Laurent F (2007b)
Detection and organization of atrazine-degrading genetic potential
of seventeen bacterial isolates belonging to divergent taxa indicate a
recent common origin of their catabolic functions. FEMS Microbiol
Lett 273:78–86
Devers M, Rouard N, Martin-Laurent F (2008) Fitness drift of an
atrazine-degrading population under atrazine selection pressure.
Environ Microbiol 10:676–684
Dodge AG, Wackett LP, Sadowsky MJ (2012) Plasmid localization and
organization of melamin degradation genes in Rhodococcus sp.
strain Mel. Appl Environ Microbiol 78:1397–1403
Don RH, Pemberton JM (1985) Genetic and physical map of the
2,4-Dichlorophenoxyacetic acid-degradative plasmid pJP4.
J Bacteriol 161:466–468
Durand A (2003) Bioreactor designs for solid-state fermentation.
Biochem Eng J 13:113–125
Ehrlich HL (1995) Biogenesis and biodegradation of sulfide minerals
on the earth’s surface. In: Ehrlich HL (ed) Geomicrobiology.
Dekker, New York, pp 578–614
El Azhari N, Devers-Lamrani M, Chatagnier G, Rouard N, MartinLaurent F (2010) Molecular analysis of the catechol-degrading
bacterial community in a coal wasteland heavily contaminated
with PAHs. J Hazard Mater 177:593–601
El Fantroussi S, Agathos SN (2005) Is bioaugmentation a feasible
strategy for pollutant removal and site remediation? Curr Opin
Microbiol 8:268–275
Elbaz-Poulichet F, Morley NH, Beckers JM, Nomerange P (2001)
Dissolved metals fluxes through the Strait of Gibraltar – the influence of the Tinto and Odiel Rivers (SW Spain). Mar Chem
3–4:193–213
Ellis LB, Wackett LP (2012) Use of the University of Minnesota
biocatalysis/Biodegradation Database for study of microbial degradation. Microb Inform Exp 2:1
Entry JA, Donnelly PK, Emmingham WH (1996) Mineralization of
atrazine and 2,4-D in soils inoculated with Phanerochaete
chrysosporium and Trappea darkeri. Appl Soil Ecol 3:85–90
Fava F, Di Gioia D, Marchettei L, Quattroni G (1996) Aerobic dechlorination of low-chlorinated biphenyls by bacterial biofilms in packedbed batch bioreactors. Appl Microbiol Biotechnol 45:562–568
Fava F, Di Gioia D, Marchetti L (1998) Cyclodextrin effects on the ex
situ bioremediation of a chronically polychlorobiphenylcontaminated soil. Biotechnol Bioeng 58:345–355
Felsot SA, Wilson JG, Kuhlamn DE, Steey KL (1982) Rapid dissipation of carbofuran as a limiting factor in corn root-worm control in ¢
elds with histories of continuous furadan use. J Econ Entomol
75:1098–1103
Fennell DE, Nijenhuis I, Wilson SF, Zinder SH, Ha ¨ggblom MM (2004)
Dehalococcoides ethenogenes strain 195 reductively dechlorinates
diverse chlorinated aromatic pollutants. Environ Sci Technol
38:2075–2081
Fernandez-Linarez L, Acquaviva M, Bertrand J-C, Gauthier M (1995)
Effect of sodium chloride concentration on growth and degradation
of eicosane by the marine halotolerant bacterium Marinobacter
hydrocarbonoclasticus. Syst Appl Microbiol 19:113–121
Field JA, Sierra-Alvarez R (2008) Microbial transformation and degradation of polychlorinated biphenyls. Environ Pollut 155:1–12
Frost LS, Leplae R, Summers AO, Toussaint A (2005) Mobile genetic
elements: the agents of open source evolution. Nat Rev Microbiol
3:722–732
Fuchs G, Boll M, Heider J (2011) Microbial de ´gradation of aromatic
compounds – from one strategy to four. Nat Rev Microbiol
9:803–816
Furukawa K (2000) Biochemical and genetic bases of microbial degradation of polychlorinated biphenyls (PCBs). J Gen Appl Microbiol
46:283–296
Gadd GM (1990) Heavy metal accumulation by bacteria and other
microorganisms. Experientia 46:834–840
Gaillard M, Vallaeys T, Vorho ¨leter FJ, Minoia M, Werlen C, Sentchilo
V, Pu ¨lher A, van der Meer JR (2006) The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic
properties. J Bacteriol 188:1999–2013
Garcia-Gonzalez V, Govantes F, Porrua O, Santero E (2005) Regulation of the Pseudomonas sp. strain ADP cyanuric acid degradation
operon. J Bacteriol 187:155–167
Gauthier M, Lafay B, Christen R, Fernandez L, Acquaviva M, Bonin P,
Bertrand JC (1992) Marinobacter hydrocarbonoclasticus gen. nov.,
sp. nov., a new, extremely halotolerant, hydrocarbon-degrading
marine bacterium. Int J Syst Bacteriol 42:568–576
Gazitu ´a MC, Slater AW, Melo F, Gonza ´lez B (2010) Novel aketoglutarate dioxygenase tfdA-related genes are found in soil
DNA after exposure to phenoxyalkanoic herbicides. Environ
Microbiol 12:2411–2425
Gentry TJ, Rensing C, Pepper IL (2004) New approaches for
bioaugmentation as a remediation technology. Crit Rev Environ
Sci Technol 34:447–494
Gerhardt KE, Huang X-D, Glick BR, Greenberg BM (2009)
Phytoremediation and rhizoremediation of organic soil
contaminants: potential and challenges. Plant Sci 176:20–30
Gilbert EC, Crowley DE (1997) Plant compounds that induce
polychlorinated biphenyl biodegradation by Arthrobacter sp. Strain
B1B. Appl Environ Microbiol 63:1933–1938
Grigg BC, Assaf NA, Turco RF (1997) Removal of atrazine contamination in soil and liquid systems using bioaugmentation. Pestic Sci
50:211–220
Grimaud R (2010a) Marinobacter. In: Timmis KN, Mc Genity TJ, Merr
JR, Lorenzo V (eds) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin/Heidelberg, pp 1289–1296
Grimaud R (2010b) Biofilm development at interfaces between
hydrophobic organic compounds and water. In: Timmis KN,
Mc Genity TJ, Merr JR, Lorenzo V (eds) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin/Heidelberg,
pp 1491–1499
Grossi V, Massias D, Stora G, Bertrand J-C (2002) Burial, exportation
and degradation of acyclic petroleum hydrocarbons following a
simulated oil spill in bioturbed Mediterranean coastal sediments.
Chemosphere 48:947–954
Grossi V, Cravo-Laureau C, Guyoneaud R, Ranchou- Peyruse A,
Hirschler-Re ´a A (2008) Metabolism of n-alkanes by anaerobic
bacteria: a summary. Org Geochem 39:1197–1203
748
J.-C. Bertrand et al.
e e ´dition, tomes 1
et 2. Lavoisier, Cachan
Dejonghe W, Goris J, El Fantroussi S, Hofte M, De Vos P, Verstraete
W, Top EM (2000) Effect of dissemination of
2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on
2,4-D degradation and on bacterial community structure in two
different soil horizons. Appl Environ Microbiol 66:3297–3304
Dejonghe W, Boon N, Seghers D, Top EM, Verstraete W (2001)
Bioaugmentation of soils by increasing microbial richness: missing
links. Environ Microbiol 3:649–657
Devers M, Soulas G, Martin-Laurent F (2004) Real-time reverse transcription PCR analysis of expression of atrazine catabolism genes in
two bacterial strains isolated from soil. J Microbiol Methods 56:3–15
Devers M, Henry S, Hartmann A, Martin-Laurent F (2005) Horizontal
gene transfer of atrazine-degrading genes atz from Agrobacterium
tumefaciens St96-4 pADP1::Tn5 to bacteria of maize-cultivated
soil. Pest Manag Sci 61:870–880
Devers M, Rouard N, Martin-Laurent F (2007a) Genetic rearrangement of the atzAB atrazine-degrading gene cassette from pADP1::
Tn5 to the chromosome of Variovorax sp. MD1 and MD2. Gene
392:1–6
Devers M, El Azhari N, Udikovic- Kolic N, Martin-Laurent F (2007b)
Detection and organization of atrazine-degrading genetic potential
of seventeen bacterial isolates belonging to divergent taxa indicate a
recent common origin of their catabolic functions. FEMS Microbiol
Lett 273:78–86
Devers M, Rouard N, Martin-Laurent F (2008) Fitness drift of an
atrazine-degrading population under atrazine selection pressure.
Environ Microbiol 10:676–684
Dodge AG, Wackett LP, Sadowsky MJ (2012) Plasmid localization and
organization of melamin degradation genes in Rhodococcus sp.
strain Mel. Appl Environ Microbiol 78:1397–1403
Don RH, Pemberton JM (1985) Genetic and physical map of the
2,4-Dichlorophenoxyacetic acid-degradative plasmid pJP4.
J Bacteriol 161:466–468
Durand A (2003) Bioreactor designs for solid-state fermentation.
Biochem Eng J 13:113–125
Ehrlich HL (1995) Biogenesis and biodegradation of sulfide minerals
on the earth’s surface. In: Ehrlich HL (ed) Geomicrobiology.
Dekker, New York, pp 578–614
El Azhari N, Devers-Lamrani M, Chatagnier G, Rouard N, MartinLaurent F (2010) Molecular analysis of the catechol-degrading
bacterial community in a coal wasteland heavily contaminated
with PAHs. J Hazard Mater 177:593–601
El Fantroussi S, Agathos SN (2005) Is bioaugmentation a feasible
strategy for pollutant removal and site remediation? Curr Opin
Microbiol 8:268–275
Elbaz-Poulichet F, Morley NH, Beckers JM, Nomerange P (2001)
Dissolved metals fluxes through the Strait of Gibraltar – the influence of the Tinto and Odiel Rivers (SW Spain). Mar Chem
3–4:193–213
Ellis LB, Wackett LP (2012) Use of the University of Minnesota
biocatalysis/Biodegradation Database for study of microbial degradation. Microb Inform Exp 2:1
Entry JA, Donnelly PK, Emmingham WH (1996) Mineralization of
atrazine and 2,4-D in soils inoculated with Phanerochaete
chrysosporium and Trappea darkeri. Appl Soil Ecol 3:85–90
Fava F, Di Gioia D, Marchettei L, Quattroni G (1996) Aerobic dechlorination of low-chlorinated biphenyls by bacterial biofilms in packedbed batch bioreactors. Appl Microbiol Biotechnol 45:562–568
Fava F, Di Gioia D, Marchetti L (1998) Cyclodextrin effects on the ex
situ bioremediation of a chronically polychlorobiphenylcontaminated soil. Biotechnol Bioeng 58:345–355
Felsot SA, Wilson JG, Kuhlamn DE, Steey KL (1982) Rapid dissipation of carbofuran as a limiting factor in corn root-worm control in ¢
elds with histories of continuous furadan use. J Econ Entomol
75:1098–1103
Fennell DE, Nijenhuis I, Wilson SF, Zinder SH, Ha ¨ggblom MM (2004)
Dehalococcoides ethenogenes strain 195 reductively dechlorinates
diverse chlorinated aromatic pollutants. Environ Sci Technol
38:2075–2081
Fernandez-Linarez L, Acquaviva M, Bertrand J-C, Gauthier M (1995)
Effect of sodium chloride concentration on growth and degradation
of eicosane by the marine halotolerant bacterium Marinobacter
hydrocarbonoclasticus. Syst Appl Microbiol 19:113–121
Field JA, Sierra-Alvarez R (2008) Microbial transformation and degradation of polychlorinated biphenyls. Environ Pollut 155:1–12
Frost LS, Leplae R, Summers AO, Toussaint A (2005) Mobile genetic
elements: the agents of open source evolution. Nat Rev Microbiol
3:722–732
Fuchs G, Boll M, Heider J (2011) Microbial de ´gradation of aromatic
compounds – from one strategy to four. Nat Rev Microbiol
9:803–816
Furukawa K (2000) Biochemical and genetic bases of microbial degradation of polychlorinated biphenyls (PCBs). J Gen Appl Microbiol
46:283–296
Gadd GM (1990) Heavy metal accumulation by bacteria and other
microorganisms. Experientia 46:834–840
Gaillard M, Vallaeys T, Vorho ¨leter FJ, Minoia M, Werlen C, Sentchilo
V, Pu ¨lher A, van der Meer JR (2006) The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic
properties. J Bacteriol 188:1999–2013
Garcia-Gonzalez V, Govantes F, Porrua O, Santero E (2005) Regulation of the Pseudomonas sp. strain ADP cyanuric acid degradation
operon. J Bacteriol 187:155–167
Gauthier M, Lafay B, Christen R, Fernandez L, Acquaviva M, Bonin P,
Bertrand JC (1992) Marinobacter hydrocarbonoclasticus gen. nov.,
sp. nov., a new, extremely halotolerant, hydrocarbon-degrading
marine bacterium. Int J Syst Bacteriol 42:568–576
Gazitu ´a MC, Slater AW, Melo F, Gonza ´lez B (2010) Novel aketoglutarate dioxygenase tfdA-related genes are found in soil
DNA after exposure to phenoxyalkanoic herbicides. Environ
Microbiol 12:2411–2425
Gentry TJ, Rensing C, Pepper IL (2004) New approaches for
bioaugmentation as a remediation technology. Crit Rev Environ
Sci Technol 34:447–494
Gerhardt KE, Huang X-D, Glick BR, Greenberg BM (2009)
Phytoremediation and rhizoremediation of organic soil
contaminants: potential and challenges. Plant Sci 176:20–30
Gilbert EC, Crowley DE (1997) Plant compounds that induce
polychlorinated biphenyl biodegradation by Arthrobacter sp. Strain
B1B. Appl Environ Microbiol 63:1933–1938
Grigg BC, Assaf NA, Turco RF (1997) Removal of atrazine contamination in soil and liquid systems using bioaugmentation. Pestic Sci
50:211–220
Grimaud R (2010a) Marinobacter. In: Timmis KN, Mc Genity TJ, Merr
JR, Lorenzo V (eds) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin/Heidelberg, pp 1289–1296
Grimaud R (2010b) Biofilm development at interfaces between
hydrophobic organic compounds and water. In: Timmis KN,
Mc Genity TJ, Merr JR, Lorenzo V (eds) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin/Heidelberg,
pp 1491–1499
Grossi V, Massias D, Stora G, Bertrand J-C (2002) Burial, exportation
and degradation of acyclic petroleum hydrocarbons following a
simulated oil spill in bioturbed Mediterranean coastal sediments.
Chemosphere 48:947–954
Grossi V, Cravo-Laureau C, Guyoneaud R, Ranchou- Peyruse A,
Hirschler-Re ´a A (2008) Metabolism of n-alkanes by anaerobic
bacteria: a summary. Org Geochem 39:1197–1203
748
J.-C. Bertrand et al.