Bruland K et al (1979) Sampling and analytical methods for the determination of copper, cadmium, zinc and nickel at the nanogram per
liter level in sea water. Anal Chim Acta 105:223–245
Brune A (1998) Termite guts: the world’s smallest bioreactors. Trends
Biotechnol 16:16–21
Buffet BA (2000) Clathrates hydrates. Annu Rev Earth Planet Sci
28:477–507
Butler A (1998) Acquisition and utilization of transition metals ions by
marine organisms. Science 281:207–210
Caumette P (1986) Phototrophic sulfur bacteria and sulfatereducing
bacteria causing red waters in a shallow brackish coastal lagoon
(Prevost Lagoon, France). FEMS Microbiol Ecol 38:113–124
Chapin FS (2002) Principles of terrestrial ecosystem ecology. Springer,
New York
Chisholm SW (2000) Oceanography – stirring times in the Southern
Ocean. Nature 407:685–687
Chisholm SW, Olson RJ, Zettler ER, Goericke R, Waterbury JB,
Welschmeyer NA (1988) A novel free living prochlorophyte abundant in the oceanic euphotic zone. Nature 334:340–343
Chistoserdova L, Vorholt JA, Lidstrom ME (2005) A genomic view of
methane oxidation by aerobic bacteria and anaerobic archaea.
Genome Biol 6:208
Chivan D et al (2008) Environmental genomics reveals a single-species
ecosystem deep within earth. Science 322:275–278
Christl SU, Murgatroyd PR, Gibson GR, Cummings JH (1992) Production, metabolism and excretion of H2 in the large intestine. Gastroenterology 102:1269–1277
Cline JD (1969) Spectrophotometric determination of hydrogen sulfide
in natural waters. Limnol Oceanogr 14:454–458
Coates JD, Councell T, Ellis DJ, Lovley DR (1998) Carbohydrate
oxidation coupled to Fe (III) reduction, a novel form of anaerobic
metabolism. Anaerobe 4:277–282
Cohen Y, Jørgensen BB, Padan E, Shilo M (1975) Sulfide-dependent
anoxygenic photosynthesis in the cyanobacterium Oscillatoria
limnetica. Nature 257:486–492
Compeau GC, Bartha R (1985) Sulfate-reducing bacteria: principal
methylators of mercury in anoxic estuarine sediment. Appl Environ
Microbiol 50:498–502
Crolet JL (1992) From biology and corrosion to biocorrosion. Oceanol
Acta 15:87–94
Cypionka H (2000) Oxygen respiration by Desulfovibrio species. Annu
Rev Microbiol 54:827–848
Damste JSS et al (2002) Linearly concatenated cyclobutane lipids form
a dense bacterial membrane. Nature 419:708–712
Danon M, Franke-Whittle IH, Insam H, Chen Y, Hadar Y (2008)
Molecular analysis of bacterial community succession during
prolonged compost curing. FEMS Microbiol Ecol 65:133–144
Daumas S, Magot M, Crolet JL (1993) Measurement of the net production of acidity by a sulphate-reducing bacterium: experimental
checking of theoretical models of microbially influenced corrosion.
Res Microbiol 144:327–332
De Bona FD, Bayer C, Dieckow J, Bergamaschi H (2008) Soil quality
assessed by carbon management index in a subtropical acrisol
subjected to tillage systems and irrigation. Aust J Soil Res
46:469–475
de Wit R, van Gemerden H (1990) Growth and metabolism of
the purple sulfur bacterium Thiocapsa roseopersicina under combined light/dark and oxic/anoxic regimens. Arch Microbiol
154:459–464
Del Amo Y, Que ´guiner B, Tre ´guer P, Breton H, Lampert L (1997)
Impacts of high-nitrate freshwater inputs on macrotidal ecosystems.
II. Specific role of the silicic acid pump in the year-round
dominance of diatoms in the Bay of Brest (France). Mar Ecol
Prog Ser 161:225–237
del Giorgio PA, Williams PJB (2005) The global significance of respiration in aquatic ecosystems: from single cells to the biosphere. In:
del Giorgio PA, Williams PJB (eds) Respiration in aquatic
ecosystems. Oxford University Press, Oxford, pp 267–303
Des Marais DJ (2003) Biogeochemistry of hypersaline microbial mats
illustrates the dynamics of modern microbial ecosystems and the
early evolution of the biosphere. Biol Bull 204:160–167
Drake HL, Horn MA (2007) As the worm turns: the earthworm gut as a
transient habitat for soil microbial biomes. Annu Rev Microbiol
61:169–189
Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M (2012)
Methanomassiliicoccus luminyensis, gen. nov., sp. nov., a
methanogenic archaeon isolated from human faeces. Int J Syst
Evol Microbiol 62:1902–1907
Duhamel S, Bjo ¨rkman KM, van Wambeke F, Moutin T, Karl DM
(2011) Characterization of alkaline phosphatase activity in the
North and South pacific subtropical gyres: implications for phosphorus cycling. Limnol Oceanogr 56:1244–1254
Dyhrman ST, Ammermann JW, Van Mooy BA (2007) Microbes and
marine phosphorus cycle. Oceanography 20:110–116
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent
M, Gill SR, Nelson KE, Relman DA (2005) Diversity of the human
intestinal microbial flora. Science 308:1635–1638
Ehrenreich A, Widdel F (1994) Anaerobic oxidation of ferrous iron by
purple bacteria, a new type of phototrophic metabolism. App Environ Microbiol 60:4517–4526
Ehrlich HL (2002) Geomicrobiology. Marcel Dekker, New York
Elvert M, Boetius A, Knittel K, Jørgensen BB (2003) Characterization
of specific membrane fatty acids as chemotaxonomic markers for
sulphate-reducing bacteria involved in anaerobic oxidation of methane. Geomicrobiol J 20:403–419
Ettwig KF et al (2008) Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environ Microbiol 10:3164–3173
Ettwig KF et al (2010) Nitrite-driven anaerobic methane oxidation by
oxygenic bacteria. Nature 464:543–548
Farenhorst A (2006) Importance of soil organic matter fractions in soillandscape and regional assessments of pesticide sorption and
leaching in soil. Soil Sci 70:1005–1012
Farina M, Esquivel DMS, Lins de Bzarros HGP (1990) Magnetic ironsulfur crystals from a magnetotactil microorganism. Nature
343:256–258
Fay P (1992) Oxygen relations of nitrogen-fixation in cyanobacteria.
Microbiol Rev 56:340–373
Fe ´ron D, Compe `re C, Dupont I, Magot M (2002) Biode ´te ´rioration des
mate ´riaux me ´talliques ou biocorrosion. In Be ´ranger G, et Mazille H
(eds) Corrosion des me ´taux et alliages. Lavoisier, Paris, pp 385–405
Field CB, Behrenfeld MJ, Randerson JT, Falkowski P (1998) Primary
production of the biosphere: integrating terrestrial and oceanic
components. Science 281:237–240
Fleming EJ, Mack EE, Green PG, Nelson DC (2006) Mercury methylation from unexpected sources: molybdate-inhibited freshwater
sediment and iron-reducing bacterium. Appl Environ Microbiol
64:457–464
Fontaine S, Mariotti A, Abbadie L (2003) The priming effect of organic
matter: a question of microbial competition? Soil Biol Biochem
35:837–843
Fontaine S, Bardoux G, Abbadie L, Mariotti A (2004) Carbon input to
soil may decrease soil carbon content. Ecol Lett 7:314–320
Forshay KJ, Stanley EH (2005) Rapid nitrate loss and denitrification in
a temperate river floodplain. Biogeochemistry 75:43–64
14 Biogeochemical Cycles
613
liter level in sea water. Anal Chim Acta 105:223–245
Brune A (1998) Termite guts: the world’s smallest bioreactors. Trends
Biotechnol 16:16–21
Buffet BA (2000) Clathrates hydrates. Annu Rev Earth Planet Sci
28:477–507
Butler A (1998) Acquisition and utilization of transition metals ions by
marine organisms. Science 281:207–210
Caumette P (1986) Phototrophic sulfur bacteria and sulfatereducing
bacteria causing red waters in a shallow brackish coastal lagoon
(Prevost Lagoon, France). FEMS Microbiol Ecol 38:113–124
Chapin FS (2002) Principles of terrestrial ecosystem ecology. Springer,
New York
Chisholm SW (2000) Oceanography – stirring times in the Southern
Ocean. Nature 407:685–687
Chisholm SW, Olson RJ, Zettler ER, Goericke R, Waterbury JB,
Welschmeyer NA (1988) A novel free living prochlorophyte abundant in the oceanic euphotic zone. Nature 334:340–343
Chistoserdova L, Vorholt JA, Lidstrom ME (2005) A genomic view of
methane oxidation by aerobic bacteria and anaerobic archaea.
Genome Biol 6:208
Chivan D et al (2008) Environmental genomics reveals a single-species
ecosystem deep within earth. Science 322:275–278
Christl SU, Murgatroyd PR, Gibson GR, Cummings JH (1992) Production, metabolism and excretion of H2 in the large intestine. Gastroenterology 102:1269–1277
Cline JD (1969) Spectrophotometric determination of hydrogen sulfide
in natural waters. Limnol Oceanogr 14:454–458
Coates JD, Councell T, Ellis DJ, Lovley DR (1998) Carbohydrate
oxidation coupled to Fe (III) reduction, a novel form of anaerobic
metabolism. Anaerobe 4:277–282
Cohen Y, Jørgensen BB, Padan E, Shilo M (1975) Sulfide-dependent
anoxygenic photosynthesis in the cyanobacterium Oscillatoria
limnetica. Nature 257:486–492
Compeau GC, Bartha R (1985) Sulfate-reducing bacteria: principal
methylators of mercury in anoxic estuarine sediment. Appl Environ
Microbiol 50:498–502
Crolet JL (1992) From biology and corrosion to biocorrosion. Oceanol
Acta 15:87–94
Cypionka H (2000) Oxygen respiration by Desulfovibrio species. Annu
Rev Microbiol 54:827–848
Damste JSS et al (2002) Linearly concatenated cyclobutane lipids form
a dense bacterial membrane. Nature 419:708–712
Danon M, Franke-Whittle IH, Insam H, Chen Y, Hadar Y (2008)
Molecular analysis of bacterial community succession during
prolonged compost curing. FEMS Microbiol Ecol 65:133–144
Daumas S, Magot M, Crolet JL (1993) Measurement of the net production of acidity by a sulphate-reducing bacterium: experimental
checking of theoretical models of microbially influenced corrosion.
Res Microbiol 144:327–332
De Bona FD, Bayer C, Dieckow J, Bergamaschi H (2008) Soil quality
assessed by carbon management index in a subtropical acrisol
subjected to tillage systems and irrigation. Aust J Soil Res
46:469–475
de Wit R, van Gemerden H (1990) Growth and metabolism of
the purple sulfur bacterium Thiocapsa roseopersicina under combined light/dark and oxic/anoxic regimens. Arch Microbiol
154:459–464
Del Amo Y, Que ´guiner B, Tre ´guer P, Breton H, Lampert L (1997)
Impacts of high-nitrate freshwater inputs on macrotidal ecosystems.
II. Specific role of the silicic acid pump in the year-round
dominance of diatoms in the Bay of Brest (France). Mar Ecol
Prog Ser 161:225–237
del Giorgio PA, Williams PJB (2005) The global significance of respiration in aquatic ecosystems: from single cells to the biosphere. In:
del Giorgio PA, Williams PJB (eds) Respiration in aquatic
ecosystems. Oxford University Press, Oxford, pp 267–303
Des Marais DJ (2003) Biogeochemistry of hypersaline microbial mats
illustrates the dynamics of modern microbial ecosystems and the
early evolution of the biosphere. Biol Bull 204:160–167
Drake HL, Horn MA (2007) As the worm turns: the earthworm gut as a
transient habitat for soil microbial biomes. Annu Rev Microbiol
61:169–189
Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M (2012)
Methanomassiliicoccus luminyensis, gen. nov., sp. nov., a
methanogenic archaeon isolated from human faeces. Int J Syst
Evol Microbiol 62:1902–1907
Duhamel S, Bjo ¨rkman KM, van Wambeke F, Moutin T, Karl DM
(2011) Characterization of alkaline phosphatase activity in the
North and South pacific subtropical gyres: implications for phosphorus cycling. Limnol Oceanogr 56:1244–1254
Dyhrman ST, Ammermann JW, Van Mooy BA (2007) Microbes and
marine phosphorus cycle. Oceanography 20:110–116
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent
M, Gill SR, Nelson KE, Relman DA (2005) Diversity of the human
intestinal microbial flora. Science 308:1635–1638
Ehrenreich A, Widdel F (1994) Anaerobic oxidation of ferrous iron by
purple bacteria, a new type of phototrophic metabolism. App Environ Microbiol 60:4517–4526
Ehrlich HL (2002) Geomicrobiology. Marcel Dekker, New York
Elvert M, Boetius A, Knittel K, Jørgensen BB (2003) Characterization
of specific membrane fatty acids as chemotaxonomic markers for
sulphate-reducing bacteria involved in anaerobic oxidation of methane. Geomicrobiol J 20:403–419
Ettwig KF et al (2008) Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environ Microbiol 10:3164–3173
Ettwig KF et al (2010) Nitrite-driven anaerobic methane oxidation by
oxygenic bacteria. Nature 464:543–548
Farenhorst A (2006) Importance of soil organic matter fractions in soillandscape and regional assessments of pesticide sorption and
leaching in soil. Soil Sci 70:1005–1012
Farina M, Esquivel DMS, Lins de Bzarros HGP (1990) Magnetic ironsulfur crystals from a magnetotactil microorganism. Nature
343:256–258
Fay P (1992) Oxygen relations of nitrogen-fixation in cyanobacteria.
Microbiol Rev 56:340–373
Fe ´ron D, Compe `re C, Dupont I, Magot M (2002) Biode ´te ´rioration des
mate ´riaux me ´talliques ou biocorrosion. In Be ´ranger G, et Mazille H
(eds) Corrosion des me ´taux et alliages. Lavoisier, Paris, pp 385–405
Field CB, Behrenfeld MJ, Randerson JT, Falkowski P (1998) Primary
production of the biosphere: integrating terrestrial and oceanic
components. Science 281:237–240
Fleming EJ, Mack EE, Green PG, Nelson DC (2006) Mercury methylation from unexpected sources: molybdate-inhibited freshwater
sediment and iron-reducing bacterium. Appl Environ Microbiol
64:457–464
Fontaine S, Mariotti A, Abbadie L (2003) The priming effect of organic
matter: a question of microbial competition? Soil Biol Biochem
35:837–843
Fontaine S, Bardoux G, Abbadie L, Mariotti A (2004) Carbon input to
soil may decrease soil carbon content. Ecol Lett 7:314–320
Forshay KJ, Stanley EH (2005) Rapid nitrate loss and denitrification in
a temperate river floodplain. Biogeochemistry 75:43–64
14 Biogeochemical Cycles
613