Kulasakara H et al (2006) Analysis of Pseudomonas aeruginosa
diguanylate cyclases and phosphodiesterases reveals a role for
bis-(3
0 -5
0 )-cyclic-GMP in virulence. Proc Natl Acad Sci U S A
103:2839–2844
Lacroix A (1931) On the recent fall (June 27, 1931) of a meteorite
asiderite in the extreme south of Tunisia. C R Acad Sci Paris
193:305–309
Lapouge K, Schubert M, Allain FH, Haas D (2008) Gac/Rsm signal
transduction pathway of gamma-proteobacteria: from RNA recognition to regulation of social behaviour. Mol Microbiol 67:241–253
Latifi A, Foglino M, Tanaka K, Williams P, Lazdunski A (1996)
A hierarchical quorum-sensing cascade in Pseudomonas aeruginosa
links the transcriptional activators LasR and RhIR (VsmR) to
expression of the stationary-phase sigma factor RpoS. Mol Microbiol
21:1137–1146
Laue BE et al (2000) The biocontrol strain Pseudomonas fluorescens
F113 produces the Rhizobium small bacteriocin, N-(3-hydroxy-7cis-tetradecenoyl) homoserine lactone, via HdtS, a putative novel
N-acylhomoserine lactone synthase. Microbiology 146:2469–2480
Le Rudulier D, Bouillard L (1983) Glycine betaine, an osmotic effector
in Klebsiella pneumoniae and other members of the Enterobacteriaceae. Appl Environ Microbiol 46:152–159
Leadbetter JR, Greenberg EP (2000) Metabolism of acyl-homoserine
lactone quorum-sensing signals by Variovorax paradoxus. J
Bacteriol 182:6921–6926
Lee SY, Bailey SC, Apirion D (1978) Small stable RNAs from
Escherichia coli: evidence for the existence of new molecules and
for a new ribonucleoprotein particle containing 6S RNA. J Bacteriol
133:1015–1023
Leigh JA, Dodsworth JA (2007) Nitrogen regulation in bacteria and
archaea. Annu Rev Microbiol 61:349–377
Lewin B (1981) Gene expression. Wiley, New York
Lieph R, Veloso FA, Holmes DS (2006) Thermophiles like hot T.
Trends Microbiol 14:423–426
Lithgow JK, Wilkinson A, Hardman A, Rodelas B, Wisniewski-Dye ´ F,
Williams P, Downie JA (2000) The regulatory locus cinRI in
Rhizobium leguminosarum controls a network of quorum-sensing
loci. Mol Microbiol 37:81–97
Liu W, Christenson SD, Standage S, Shen B (2002) Biosynthesis of
the enediyne antitumor antibiotic C-1027. Science 297:1170–1173
Long PF et al (2002) Engineering specificity of starter unit selection by
the erythromycin-producing polyketide synthase. Mol Microbiol
43:1215–1225
Lorenz C, von Pelchrzim F, Schroeder R (2006) Evolution of Genomic
systematic ligands by exponential enrichment (Genomic SELEX)
for the identification of protein-binding RNAs independent of Their
Expression Levels. Nat Protoc 1:2204–2212
Lory S, Wolfgang M, Lee V, Smith R (2004) The multi-talented
bacterial adenylate cyclases. Int J Med Microbiol 293:479–482
Luneberg E et al (2001) Chromosomal insertion and excision of a 30 kb
unstable genetic element is responsible for phase variation of
lipopolysaccharide and other virulence determinants in Legionella
pneumophila. Mol Microbiol 39:1259–1271
Lyon GJ, Novick RP (2004) Peptide signaling in Staphylococcus
aureus and other Gram-positive bacteria. Peptides 25:1389–1403
Ma HW, Kumar B, Ditges U, Gunzer F, Buer J, Zeng AP (2004) An
extended transcriptional regulatory network of Escherichia coli and
analysis of its hierarchical structure and network motifs. Nucleic
Acids Res 32:6643–6649
Madigan M, Martinko JM, Stahl D, Clark DP (2010) Brock: biology
of microorganisms, 13th edn. Pearson Benjamin-Cummings,
San Francisco
Manefield M, Rasmussen TB, Henzter M, Andersen JB, Steinberg P,
Kjelleberg S, Givskov M (2002) Halogenated furanones inhibit
quorum sensing through accelerated LuxR turnover. Microbiology
148:1119–1127
Manickam N, Reddy MK, Saini HS, Shanker R (2008) Isolation
of hexachlorocyclohexane-degrading Sphingomonas sp. by
dehalogenase assay and characterization of genes involved in
gamma-HCH degradation. J Appl Microbiol 104:952–960
Martinez-Antonio A, Collado-Vides J (2003) Identifying global
regulators in transcriptional regulatory networks in bacteria. Curr
Opin Microbiol 6:482–489
Mascher T, Helmann JD, Unden G (2006) Stimulus perception in
bacterial signal-transducing histidine kinases. Microbiol Mol Biol
Rev 70:910–938
Masse ´ E, Gottesman S (2002) A small RNA regulates the expression of
genes involved in iron metabolism in Escherichia coli. Proc Natl
Acad Sci U S A 99:4620–4625
Mathesius U (2003) Conservation and divergence of signalling
pathways between roots and soil microbes – the Rhizobium-legume
symbiosis compared to the development of lateral roots,
mycorrhizal interactions and nematode-induced galls. Plant Soil
255:105–119
Mathesius U, Mulders S, Gao M, Teplitski M, Caetano- Anolles G,
Rolfe BG, Bauer WD (2003) Extensive and specific responses of a
eukaryote to bacterial quorumsensing signals. Proc Natl Acad Sci U
S A 100:1444–1449
Mattick JS (2002) Type IV pili and twitching motility. Annu Rev
Microbiol 56:289–314
McBride MJ (2001) Bacterial gliding motility: multiple mechanisms
for cell movement over surfaces. Annu Rev Microbiol 55:49–75
McKenney D, Brown KE, Allison DG (1995) Influence of Pseudomonas aeruginosa exoproducts on virulence factor production in
Burkholderia cepacia: evidence of interspecies communication. J
Bacteriol 177:6989–6992
Miller AA (1961) Climatology. Methuen, London
Mills JA, Venkatesan MM, Baron LS, Buysse JM (1992) Spontaneous
insertion of an IS1-like element into the virF gene is responsible for
avirulence in opaque colonial variants of Shigella flexneri 2a. Infect
Immun 60:175–182
Minton KW (1994) DNA repair in the extremely radioresistant bacterium Deinococcus radiodurans. Mol Microbiol 13:9–15
Monchy S et al (2006) Transcriptomic and proteomic analyses of the
pMOL30-encoded copper resistance in Cupriavidus metallidurans
strain CH34. Microbiology 152:1765–1776
Morita T, Maki K, Aiba H (2005) RNase E-based ribonucleoprotein
complexes: mechanical mRNA destabilization basis of noncoding
RNAs mediated by bacterial. Genes Dev 19:2176–2186
Morris CE et al (2008) The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle. ISME J 2:321–334
Moune ´ S, Manac’h N, Hirschler A, Caumette P, Willison JC, Matheron
R (1999) Haloanaerobacter salinarius sp. nov., a novel halophilic
fermentative bacterium that reduces glycine-betaine to
trimethylamine with hydrogen or serine as electron donors; emendation of the genus Haloanaerobacter. Int J Syst Bacteriol 49:103–112
Muller D et al (2006) Herminiimonas arsenicoxydans sp. nov., a
metalloresistant bacterium. Int J Syst Evol Microbiol 56:1765–1769
Nicholson B, Low D (2000) DNA methylation-dependent regulation of
pef expression in Salmonella typhimurium. Mol Microbiol
35:728–742
Normand P et al (2007) Genome characteristics of facultatively symbiotic
Frankia sp. strains reflect host range and host plant biogeography.
Genome Res 17:7–15
Ohmori M, Okamoto S (2004) Photoresponsive cAMP signal transduction in cyanobacteria. Photochem Photobiol Sci 3:503–511
Parkinson JS, Ames P, Studdert CA (2005) Collaborative signalling by
bacterial chemoreceptors. Curr Opin Microbiol 8:116–121
Pierson EA, Wood DW, Cannon JG, Blachere FM, Pierson LS (1998)
Interpopulation signaling via N-acylhomoserine lactones among
bacteria in the wheat rhizosphere. Mol Plant Microbe Interact
11:1078–1084
9 Adaptations of Prokaryotes to Their Biotopes and to Physicochemical Conditions. . .
349
diguanylate cyclases and phosphodiesterases reveals a role for
bis-(3
0 -5
0 )-cyclic-GMP in virulence. Proc Natl Acad Sci U S A
103:2839–2844
Lacroix A (1931) On the recent fall (June 27, 1931) of a meteorite
asiderite in the extreme south of Tunisia. C R Acad Sci Paris
193:305–309
Lapouge K, Schubert M, Allain FH, Haas D (2008) Gac/Rsm signal
transduction pathway of gamma-proteobacteria: from RNA recognition to regulation of social behaviour. Mol Microbiol 67:241–253
Latifi A, Foglino M, Tanaka K, Williams P, Lazdunski A (1996)
A hierarchical quorum-sensing cascade in Pseudomonas aeruginosa
links the transcriptional activators LasR and RhIR (VsmR) to
expression of the stationary-phase sigma factor RpoS. Mol Microbiol
21:1137–1146
Laue BE et al (2000) The biocontrol strain Pseudomonas fluorescens
F113 produces the Rhizobium small bacteriocin, N-(3-hydroxy-7cis-tetradecenoyl) homoserine lactone, via HdtS, a putative novel
N-acylhomoserine lactone synthase. Microbiology 146:2469–2480
Le Rudulier D, Bouillard L (1983) Glycine betaine, an osmotic effector
in Klebsiella pneumoniae and other members of the Enterobacteriaceae. Appl Environ Microbiol 46:152–159
Leadbetter JR, Greenberg EP (2000) Metabolism of acyl-homoserine
lactone quorum-sensing signals by Variovorax paradoxus. J
Bacteriol 182:6921–6926
Lee SY, Bailey SC, Apirion D (1978) Small stable RNAs from
Escherichia coli: evidence for the existence of new molecules and
for a new ribonucleoprotein particle containing 6S RNA. J Bacteriol
133:1015–1023
Leigh JA, Dodsworth JA (2007) Nitrogen regulation in bacteria and
archaea. Annu Rev Microbiol 61:349–377
Lewin B (1981) Gene expression. Wiley, New York
Lieph R, Veloso FA, Holmes DS (2006) Thermophiles like hot T.
Trends Microbiol 14:423–426
Lithgow JK, Wilkinson A, Hardman A, Rodelas B, Wisniewski-Dye ´ F,
Williams P, Downie JA (2000) The regulatory locus cinRI in
Rhizobium leguminosarum controls a network of quorum-sensing
loci. Mol Microbiol 37:81–97
Liu W, Christenson SD, Standage S, Shen B (2002) Biosynthesis of
the enediyne antitumor antibiotic C-1027. Science 297:1170–1173
Long PF et al (2002) Engineering specificity of starter unit selection by
the erythromycin-producing polyketide synthase. Mol Microbiol
43:1215–1225
Lorenz C, von Pelchrzim F, Schroeder R (2006) Evolution of Genomic
systematic ligands by exponential enrichment (Genomic SELEX)
for the identification of protein-binding RNAs independent of Their
Expression Levels. Nat Protoc 1:2204–2212
Lory S, Wolfgang M, Lee V, Smith R (2004) The multi-talented
bacterial adenylate cyclases. Int J Med Microbiol 293:479–482
Luneberg E et al (2001) Chromosomal insertion and excision of a 30 kb
unstable genetic element is responsible for phase variation of
lipopolysaccharide and other virulence determinants in Legionella
pneumophila. Mol Microbiol 39:1259–1271
Lyon GJ, Novick RP (2004) Peptide signaling in Staphylococcus
aureus and other Gram-positive bacteria. Peptides 25:1389–1403
Ma HW, Kumar B, Ditges U, Gunzer F, Buer J, Zeng AP (2004) An
extended transcriptional regulatory network of Escherichia coli and
analysis of its hierarchical structure and network motifs. Nucleic
Acids Res 32:6643–6649
Madigan M, Martinko JM, Stahl D, Clark DP (2010) Brock: biology
of microorganisms, 13th edn. Pearson Benjamin-Cummings,
San Francisco
Manefield M, Rasmussen TB, Henzter M, Andersen JB, Steinberg P,
Kjelleberg S, Givskov M (2002) Halogenated furanones inhibit
quorum sensing through accelerated LuxR turnover. Microbiology
148:1119–1127
Manickam N, Reddy MK, Saini HS, Shanker R (2008) Isolation
of hexachlorocyclohexane-degrading Sphingomonas sp. by
dehalogenase assay and characterization of genes involved in
gamma-HCH degradation. J Appl Microbiol 104:952–960
Martinez-Antonio A, Collado-Vides J (2003) Identifying global
regulators in transcriptional regulatory networks in bacteria. Curr
Opin Microbiol 6:482–489
Mascher T, Helmann JD, Unden G (2006) Stimulus perception in
bacterial signal-transducing histidine kinases. Microbiol Mol Biol
Rev 70:910–938
Masse ´ E, Gottesman S (2002) A small RNA regulates the expression of
genes involved in iron metabolism in Escherichia coli. Proc Natl
Acad Sci U S A 99:4620–4625
Mathesius U (2003) Conservation and divergence of signalling
pathways between roots and soil microbes – the Rhizobium-legume
symbiosis compared to the development of lateral roots,
mycorrhizal interactions and nematode-induced galls. Plant Soil
255:105–119
Mathesius U, Mulders S, Gao M, Teplitski M, Caetano- Anolles G,
Rolfe BG, Bauer WD (2003) Extensive and specific responses of a
eukaryote to bacterial quorumsensing signals. Proc Natl Acad Sci U
S A 100:1444–1449
Mattick JS (2002) Type IV pili and twitching motility. Annu Rev
Microbiol 56:289–314
McBride MJ (2001) Bacterial gliding motility: multiple mechanisms
for cell movement over surfaces. Annu Rev Microbiol 55:49–75
McKenney D, Brown KE, Allison DG (1995) Influence of Pseudomonas aeruginosa exoproducts on virulence factor production in
Burkholderia cepacia: evidence of interspecies communication. J
Bacteriol 177:6989–6992
Miller AA (1961) Climatology. Methuen, London
Mills JA, Venkatesan MM, Baron LS, Buysse JM (1992) Spontaneous
insertion of an IS1-like element into the virF gene is responsible for
avirulence in opaque colonial variants of Shigella flexneri 2a. Infect
Immun 60:175–182
Minton KW (1994) DNA repair in the extremely radioresistant bacterium Deinococcus radiodurans. Mol Microbiol 13:9–15
Monchy S et al (2006) Transcriptomic and proteomic analyses of the
pMOL30-encoded copper resistance in Cupriavidus metallidurans
strain CH34. Microbiology 152:1765–1776
Morita T, Maki K, Aiba H (2005) RNase E-based ribonucleoprotein
complexes: mechanical mRNA destabilization basis of noncoding
RNAs mediated by bacterial. Genes Dev 19:2176–2186
Morris CE et al (2008) The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle. ISME J 2:321–334
Moune ´ S, Manac’h N, Hirschler A, Caumette P, Willison JC, Matheron
R (1999) Haloanaerobacter salinarius sp. nov., a novel halophilic
fermentative bacterium that reduces glycine-betaine to
trimethylamine with hydrogen or serine as electron donors; emendation of the genus Haloanaerobacter. Int J Syst Bacteriol 49:103–112
Muller D et al (2006) Herminiimonas arsenicoxydans sp. nov., a
metalloresistant bacterium. Int J Syst Evol Microbiol 56:1765–1769
Nicholson B, Low D (2000) DNA methylation-dependent regulation of
pef expression in Salmonella typhimurium. Mol Microbiol
35:728–742
Normand P et al (2007) Genome characteristics of facultatively symbiotic
Frankia sp. strains reflect host range and host plant biogeography.
Genome Res 17:7–15
Ohmori M, Okamoto S (2004) Photoresponsive cAMP signal transduction in cyanobacteria. Photochem Photobiol Sci 3:503–511
Parkinson JS, Ames P, Studdert CA (2005) Collaborative signalling by
bacterial chemoreceptors. Curr Opin Microbiol 8:116–121
Pierson EA, Wood DW, Cannon JG, Blachere FM, Pierson LS (1998)
Interpopulation signaling via N-acylhomoserine lactones among
bacteria in the wheat rhizosphere. Mol Plant Microbe Interact
11:1078–1084
9 Adaptations of Prokaryotes to Their Biotopes and to Physicochemical Conditions. . .
349