2 Metagenome Analysis
71
Wild J, Hradecna Z, Szybalski W (2002) Conditionally amplifiable BACs: switching from singlecopy to high-copy vectors and genomic clones. Genome Res 12:1434–1444
Wilmes P, Bond PL (2006) Metaproteomics: studying functional gene expression in microbial
ecosystems. Trends Microbiol 14:92–97
Wommack KE, Bhavsar J, Ravel J (2008) Metagenomics: read length matters. Appl Environ
Microbiol 74:1453–1463
Woo SS, Jiang JM, Gill BS et al (1994) Construction and characterization of a bacterial artificial
chromosome library of Sorghum bicolor. Nucleic Acids Res 22:4922–4931
Woyke T, Teeling H, Ivanova NN et al (2006) Symbiosis insights through metagenomic analysis
of a microbial consortium. Nature 443:950–955
Ye YZ, Osterman A, Overbeek R et al (2005) Automatic detection of subsystem/pathway variants
in genome analysis. Bioinformatics 21:I478–I486
Yokouchi H, Fukuoka Y, Mukoyama D et al (2006) Whole-metagenome amplification of a microbial community associated with scleractinian coral by multiple displacement amplification
using phi 29 polymerase. Environ Microbiol 8:1155–1163
Yooseph S, Sutton G, Rusch DB et al (2007) The Sorcerer II Global Ocean Sampling expedition:
expanding the universe of protein families. PLoS Biol 5:432–466
Yutin N, Suzuki MT, Teeling H et al (2007) Assessing diversity and biogeography of aerobic
anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using
the Global Ocean Sampling expedition metagenomes. Environ Microbiol 9:1464–1475
Zengler K, Toledo G, Rappe M et al (2002) Cultivating the uncultured. Proc Natl Acad Sci U S A
99:15681–15686
Zhang L, Cui XF, Schmitt K et al (1992) Whole Genome Amplification from a single cell –
implications for genetic-analysis. Proc Natl Acad Sci U S A 89:5847–5851
Zhang K, Martiny AC, Reppas NB et al (2006) Sequencing genomes from single cells by
polymerase cloning. Nat Biotechnol 24:680–686
Zhou J, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl
Environ Microbiol 62:316–322
Zimmer R, Verrinder GA (1997) Construction and characterization of a large-fragment chicken
bacterial artificial chromosome library. Genomics 42:217–226
Zwirglmaier K, Ludwig W, Schleifer KH (2004) Improved method for polynucleotide probe-based
cell sorting, using DNA-coated microplates. Appl Environ Microbiol 70:494–497
71
Wild J, Hradecna Z, Szybalski W (2002) Conditionally amplifiable BACs: switching from singlecopy to high-copy vectors and genomic clones. Genome Res 12:1434–1444
Wilmes P, Bond PL (2006) Metaproteomics: studying functional gene expression in microbial
ecosystems. Trends Microbiol 14:92–97
Wommack KE, Bhavsar J, Ravel J (2008) Metagenomics: read length matters. Appl Environ
Microbiol 74:1453–1463
Woo SS, Jiang JM, Gill BS et al (1994) Construction and characterization of a bacterial artificial
chromosome library of Sorghum bicolor. Nucleic Acids Res 22:4922–4931
Woyke T, Teeling H, Ivanova NN et al (2006) Symbiosis insights through metagenomic analysis
of a microbial consortium. Nature 443:950–955
Ye YZ, Osterman A, Overbeek R et al (2005) Automatic detection of subsystem/pathway variants
in genome analysis. Bioinformatics 21:I478–I486
Yokouchi H, Fukuoka Y, Mukoyama D et al (2006) Whole-metagenome amplification of a microbial community associated with scleractinian coral by multiple displacement amplification
using phi 29 polymerase. Environ Microbiol 8:1155–1163
Yooseph S, Sutton G, Rusch DB et al (2007) The Sorcerer II Global Ocean Sampling expedition:
expanding the universe of protein families. PLoS Biol 5:432–466
Yutin N, Suzuki MT, Teeling H et al (2007) Assessing diversity and biogeography of aerobic
anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using
the Global Ocean Sampling expedition metagenomes. Environ Microbiol 9:1464–1475
Zengler K, Toledo G, Rappe M et al (2002) Cultivating the uncultured. Proc Natl Acad Sci U S A
99:15681–15686
Zhang L, Cui XF, Schmitt K et al (1992) Whole Genome Amplification from a single cell –
implications for genetic-analysis. Proc Natl Acad Sci U S A 89:5847–5851
Zhang K, Martiny AC, Reppas NB et al (2006) Sequencing genomes from single cells by
polymerase cloning. Nat Biotechnol 24:680–686
Zhou J, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl
Environ Microbiol 62:316–322
Zimmer R, Verrinder GA (1997) Construction and characterization of a large-fragment chicken
bacterial artificial chromosome library. Genomics 42:217–226
Zwirglmaier K, Ludwig W, Schleifer KH (2004) Improved method for polynucleotide probe-based
cell sorting, using DNA-coated microplates. Appl Environ Microbiol 70:494–497