30
G.R. Carvalho et al.
Mou X, Sun S et al (2008) Bacterial carbon processing by generalist species in the coastal ocean.
Nature 451:708–711
Muyzer G (1999) DGGE/TGGE a method for identifying genes from natural ecosystems. Curr
Opin Microbiol 2:317–322
Naeem S (2006) Expanding scales in biodiversity-based research: challenges and solutions for
marine systems. Mar Ecol Prog Ser 311:273–283
Noell CJ, Donnellan S, Foster R, Haigh L (2001) Molecular discrimination of garfish
Hyporhamphus (Beloniformes) larvae in southern australian waters. Mar Biotechnol 3:
509–514
Ogden R (2008) Fisheries Forensics: the use of DNA tools for improving compliance, traceability
and enforcement in the fishing industry. Fish Fisheries 9:462–472
Pace B, Campbell LL (1971a) Homology of ribosomal ribonucleic acid of Desulfovibrio species
with Desulfovibrio vulgaris. J Bacteriol 106(3):717–719
Pace B, Campbell LL (1971b) Homology of ribosomal ribonucleic acid diverse bacterial species
with Escherichia coli and Bacillus stearothermophilus. J Bacteriol 107(2):543–547
Palumbi SR, McLeod KL, Grunbaum D (2008a) Ecosystems in action: lessons from marine
ecology about recovery, resistance and reversibility. Bioscience 58:33–42
Palumbi SR, Sandifer PA, Allan JD (2008b) Managing for ocean biodiversity to sustain marine
ecosystem services. Front Ecol Environ. doi: 10.1890/070135
Patil JG, Gunasekera RM, Deagle BE, Bax NJ (2005) Specific detection of pacific oyster
(Crassostrea gigas) larvae in plankton samples using nested polymerase chain reaction. Mar
Biotechnol 7:11–20
Peers G, Price NM (2006) Copper-containing plastocyanin used for electron transport by an
oceanic diatom. Nature 44:341–344
Pegg GC, Snclair B, Briskey L et al (2006) MtDNA barcode identification of fish larvae in the
southern Great Barrier Reef, Australia. Sci Mar 70:7–12
Phillips RA, Petersen MK, Lilliendahl K et al (1999) Diet of the northern fulmar Fulmarus
glacialis: reliance on commercial fisheries?. Mar Biol 135:159–170
Pikitch EK, Santora C, Babcock EA, Bakun A, Bonfil R, Conover DO, Dayton P, Doukakis P,
Fluharty D, Heneman B, Houde ED, Link J, Livingston PA, Mangel M, McAllister MK, Pope J,
Sainsbury KJ (2004) Ecosystem-Based Fisheries Management. Science 305:346–347
Platt HM, Warwick RM (1983) Free-living marine nematodes. Part I British Enoplids. Cambridge
University Press, Cambridge
Pradillon F, Schmidt A, Peplies J, Dubilier N (2007) Species identification of marine invertebrate
early stages by whole-larvae in situ hybridisation of 18S ribosomal RNA. Mar Ecol Prog Ser
333:103–116
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a
comprehensive online resource for quality checked and aligned ribosomal RNA sequence data
compatible with ARB. Nucleic Acids Res 35(21):7188–7196
Quaiser A, Lopez-Garcia P et al (2008) Comparative analysis of genome fragments of
Acidobacteria from deep Mediterranean plankton. Environ Microbiol 10:2704–2717
Ratnasingham S, Hebert PDN (2007) BOLD: The barcode of life data system
(http://www.barcodinglife.org). Mol Ecol Notes 7:355–364
Ray GC (1991) Coastal-zone biodiversity patterns. BioScience 41:490–498
Richardson DE, Cowen RK (2004) Diversity of leptocephalus larvae around the island of Barbados
(West Indies): relevance to regional distributions. Mar Ecol Prog Ser 282:271–284
Richardson DE, Vanwye JD, Exum AM, Cowen RK, Crawford DL (2007) High-throughput species
identification: from DNA isolation to bioinformatics. Mol Ecol Notes 7:199–207
Rock J, Costa FO, Walker DI et al (2008) DNA barcodes for fish of the Antarctic Scotia Sea
indicate priority groups for taxonomic and systematic focus. Antarctic Sci 20:253–262
Rogers AD (2001) Molecular ecology and identification of marine invertebrate larvae. In: Atkinson
D, Thorndyke M (eds) Environment and animal development: genes, life histories and
plasticity. BIOS Scientific Publishers Ltd., Oxford, pp 29–69
G.R. Carvalho et al.
Mou X, Sun S et al (2008) Bacterial carbon processing by generalist species in the coastal ocean.
Nature 451:708–711
Muyzer G (1999) DGGE/TGGE a method for identifying genes from natural ecosystems. Curr
Opin Microbiol 2:317–322
Naeem S (2006) Expanding scales in biodiversity-based research: challenges and solutions for
marine systems. Mar Ecol Prog Ser 311:273–283
Noell CJ, Donnellan S, Foster R, Haigh L (2001) Molecular discrimination of garfish
Hyporhamphus (Beloniformes) larvae in southern australian waters. Mar Biotechnol 3:
509–514
Ogden R (2008) Fisheries Forensics: the use of DNA tools for improving compliance, traceability
and enforcement in the fishing industry. Fish Fisheries 9:462–472
Pace B, Campbell LL (1971a) Homology of ribosomal ribonucleic acid of Desulfovibrio species
with Desulfovibrio vulgaris. J Bacteriol 106(3):717–719
Pace B, Campbell LL (1971b) Homology of ribosomal ribonucleic acid diverse bacterial species
with Escherichia coli and Bacillus stearothermophilus. J Bacteriol 107(2):543–547
Palumbi SR, McLeod KL, Grunbaum D (2008a) Ecosystems in action: lessons from marine
ecology about recovery, resistance and reversibility. Bioscience 58:33–42
Palumbi SR, Sandifer PA, Allan JD (2008b) Managing for ocean biodiversity to sustain marine
ecosystem services. Front Ecol Environ. doi: 10.1890/070135
Patil JG, Gunasekera RM, Deagle BE, Bax NJ (2005) Specific detection of pacific oyster
(Crassostrea gigas) larvae in plankton samples using nested polymerase chain reaction. Mar
Biotechnol 7:11–20
Peers G, Price NM (2006) Copper-containing plastocyanin used for electron transport by an
oceanic diatom. Nature 44:341–344
Pegg GC, Snclair B, Briskey L et al (2006) MtDNA barcode identification of fish larvae in the
southern Great Barrier Reef, Australia. Sci Mar 70:7–12
Phillips RA, Petersen MK, Lilliendahl K et al (1999) Diet of the northern fulmar Fulmarus
glacialis: reliance on commercial fisheries?. Mar Biol 135:159–170
Pikitch EK, Santora C, Babcock EA, Bakun A, Bonfil R, Conover DO, Dayton P, Doukakis P,
Fluharty D, Heneman B, Houde ED, Link J, Livingston PA, Mangel M, McAllister MK, Pope J,
Sainsbury KJ (2004) Ecosystem-Based Fisheries Management. Science 305:346–347
Platt HM, Warwick RM (1983) Free-living marine nematodes. Part I British Enoplids. Cambridge
University Press, Cambridge
Pradillon F, Schmidt A, Peplies J, Dubilier N (2007) Species identification of marine invertebrate
early stages by whole-larvae in situ hybridisation of 18S ribosomal RNA. Mar Ecol Prog Ser
333:103–116
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a
comprehensive online resource for quality checked and aligned ribosomal RNA sequence data
compatible with ARB. Nucleic Acids Res 35(21):7188–7196
Quaiser A, Lopez-Garcia P et al (2008) Comparative analysis of genome fragments of
Acidobacteria from deep Mediterranean plankton. Environ Microbiol 10:2704–2717
Ratnasingham S, Hebert PDN (2007) BOLD: The barcode of life data system
(http://www.barcodinglife.org). Mol Ecol Notes 7:355–364
Ray GC (1991) Coastal-zone biodiversity patterns. BioScience 41:490–498
Richardson DE, Cowen RK (2004) Diversity of leptocephalus larvae around the island of Barbados
(West Indies): relevance to regional distributions. Mar Ecol Prog Ser 282:271–284
Richardson DE, Vanwye JD, Exum AM, Cowen RK, Crawford DL (2007) High-throughput species
identification: from DNA isolation to bioinformatics. Mol Ecol Notes 7:199–207
Rock J, Costa FO, Walker DI et al (2008) DNA barcodes for fish of the Antarctic Scotia Sea
indicate priority groups for taxonomic and systematic focus. Antarctic Sci 20:253–262
Rogers AD (2001) Molecular ecology and identification of marine invertebrate larvae. In: Atkinson
D, Thorndyke M (eds) Environment and animal development: genes, life histories and
plasticity. BIOS Scientific Publishers Ltd., Oxford, pp 29–69