28
G.R. Carvalho et al.
Grassle FJ, Maciolek NJ (1992) Deep-sea species richness: regional and local diversity estimates
from quantitative bottom samples. Am Nat 139:313–341
Groben R, John U, Eller G, Lange M, Medlin LK (2004) Using fluorescently-labelled rRNA probes
for hierarchical estimation of phytoplankton diversity. Nova Hedwigia 79:313–320
Hajibabaei M, Singer GA, Hebert PD, Hickey DA (2007) DNA barcoding: how it complements
taxonomy, molecular phylogenetics and population genetics. Trends Genet 23(4):167–172
Handelsmann J (2004) Metagenomics: application of genomics to uncultured microorganisms.
Microbiol Mol Biol Rev 68:669–685
Hansen BW, Larsen JB (2005) Spatial distribution of velichoncha larvae (Bivalvia) identified by
SSNM-PCR. J Shell Res 24:561–565
Harding JM (1999) Selective feeding behavior of larval naked gobies (Gobiosoma bosc) and
blennies (Chasmodes bosquianus and Hypsoblennius hentzi): preferences for bivalve veligers.
Mar Ecol Prog Ser 179:145–153
Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003) Biological identifications through DNA
barcodes. Proc R Soc Lond B 270:313–321
Hoef-Emden K, Melkonian M (2003) Revision of the genus Cryptomonas (Cryptophyceae): a
combination of molecular phylogeny and morphology provides insights in a long-hidden
dimorphism. Protist 154:371–409
Hoffmann AA, Willi Y (2008) Detecting genetic responses to environment change. Nature Rev
Genet 9:421–432
Hofmann GE, Gaines SE (2008) New tools to meet new challenges: Emerging technologies for
managing marine ecosystems for resilience. BioScience 58(1):43–52
Hosoi M, Hosoi-Tanabe S, Sawada H et al (2004) Sequence and polymerase chain reaction–
restriction fragment length polymorphism analysis of the large subunit rRNA gene of bivalve:
Simple and widely applicable technique for multiple species identification of bivalve larva. Fish
Sci 70:629–637
Huber JA, Welch DBM et al (2007) Microbial population structures in the deep marine biosphere.
Science 318:97–100
Hughes TP, Bellwood DR, Folke C, Steneck RS, Wilson J (2006) New paradigms for supporting
the resilience of marine ecosystems. Trends Ecol Evol 20:380–386
Hughes AR, Stachowicz JJ (2004) Genetic diversity enhances the resistance of a seagrass
ecosystem to disturbance. Proc Natl Acad Sci 101:8898–9002
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM (2007) Accuracy and quality of
massively parallel DNA pyrosequencing. Genome Biol 8(7):R143
Igelsia-Rodriguez D, Schofield OM, Batley PJ, Medlin LK, Hayes PK (2006) Extensive intraspecific genetic diversity in the marine coccolithophorid Emiliania huxleyi: the use of microsatellite analysis in marine phytoplankton populations studies. J Phycol 42:526–536
Ishizaka J, Harada K, Ishikawa K, Kiyosawa H, Furusawa H, Watanabe Y, Ishida H, Suzuki K,
Handa N, Takahash M (1997) Size and taxonomic plankton community structure and carbon
flow at the equator, 175 ◦ E during 1990–1994. Deep Sea Res II 44:1927–1949
Janzen DH, Hajibabaei M, Burns JM et al (2005) Wedding biodiversity inventory of a large and
complex Lepidoptera fauna with DNA barcoding. Phil Trans R Soc B 360:1835–1845
John U, Groben R, Beszteri B, Medlin L (2004) Utility of Amplified Fragment Length
Polymorphisms (AFLP) to analyse genetic structures within the Alexandrium tamarense
species complex. Protist Jun 155(2):169–179
Jones WJ, Preston CM, Marin R, Scholin CA, Vrijenhoek RC (2008) A robotic molecular method
for in situ detection of marine invertebrate larvae. Mol Ecol Res 8:540–550
Jonston AW, Li Y, Ogilvie L (2005) Metagenomic marine nitrogen fixation- feast or famine? Trends
Microbiol 13:416–420
Karaiskou N, Triantafyllidis A, Alvarez P et al (2007) Horse mackerel egg identification using
DNA methodology. Mar Ecol 28:429–434
Kemp PF, Aller JY (2004) Bacterial diversity in aquatic and other environments: what 16S rDNA
libraries can tell us. FEMS Microbiol Ecol 47:161–177
G.R. Carvalho et al.
Grassle FJ, Maciolek NJ (1992) Deep-sea species richness: regional and local diversity estimates
from quantitative bottom samples. Am Nat 139:313–341
Groben R, John U, Eller G, Lange M, Medlin LK (2004) Using fluorescently-labelled rRNA probes
for hierarchical estimation of phytoplankton diversity. Nova Hedwigia 79:313–320
Hajibabaei M, Singer GA, Hebert PD, Hickey DA (2007) DNA barcoding: how it complements
taxonomy, molecular phylogenetics and population genetics. Trends Genet 23(4):167–172
Handelsmann J (2004) Metagenomics: application of genomics to uncultured microorganisms.
Microbiol Mol Biol Rev 68:669–685
Hansen BW, Larsen JB (2005) Spatial distribution of velichoncha larvae (Bivalvia) identified by
SSNM-PCR. J Shell Res 24:561–565
Harding JM (1999) Selective feeding behavior of larval naked gobies (Gobiosoma bosc) and
blennies (Chasmodes bosquianus and Hypsoblennius hentzi): preferences for bivalve veligers.
Mar Ecol Prog Ser 179:145–153
Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003) Biological identifications through DNA
barcodes. Proc R Soc Lond B 270:313–321
Hoef-Emden K, Melkonian M (2003) Revision of the genus Cryptomonas (Cryptophyceae): a
combination of molecular phylogeny and morphology provides insights in a long-hidden
dimorphism. Protist 154:371–409
Hoffmann AA, Willi Y (2008) Detecting genetic responses to environment change. Nature Rev
Genet 9:421–432
Hofmann GE, Gaines SE (2008) New tools to meet new challenges: Emerging technologies for
managing marine ecosystems for resilience. BioScience 58(1):43–52
Hosoi M, Hosoi-Tanabe S, Sawada H et al (2004) Sequence and polymerase chain reaction–
restriction fragment length polymorphism analysis of the large subunit rRNA gene of bivalve:
Simple and widely applicable technique for multiple species identification of bivalve larva. Fish
Sci 70:629–637
Huber JA, Welch DBM et al (2007) Microbial population structures in the deep marine biosphere.
Science 318:97–100
Hughes TP, Bellwood DR, Folke C, Steneck RS, Wilson J (2006) New paradigms for supporting
the resilience of marine ecosystems. Trends Ecol Evol 20:380–386
Hughes AR, Stachowicz JJ (2004) Genetic diversity enhances the resistance of a seagrass
ecosystem to disturbance. Proc Natl Acad Sci 101:8898–9002
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM (2007) Accuracy and quality of
massively parallel DNA pyrosequencing. Genome Biol 8(7):R143
Igelsia-Rodriguez D, Schofield OM, Batley PJ, Medlin LK, Hayes PK (2006) Extensive intraspecific genetic diversity in the marine coccolithophorid Emiliania huxleyi: the use of microsatellite analysis in marine phytoplankton populations studies. J Phycol 42:526–536
Ishizaka J, Harada K, Ishikawa K, Kiyosawa H, Furusawa H, Watanabe Y, Ishida H, Suzuki K,
Handa N, Takahash M (1997) Size and taxonomic plankton community structure and carbon
flow at the equator, 175 ◦ E during 1990–1994. Deep Sea Res II 44:1927–1949
Janzen DH, Hajibabaei M, Burns JM et al (2005) Wedding biodiversity inventory of a large and
complex Lepidoptera fauna with DNA barcoding. Phil Trans R Soc B 360:1835–1845
John U, Groben R, Beszteri B, Medlin L (2004) Utility of Amplified Fragment Length
Polymorphisms (AFLP) to analyse genetic structures within the Alexandrium tamarense
species complex. Protist Jun 155(2):169–179
Jones WJ, Preston CM, Marin R, Scholin CA, Vrijenhoek RC (2008) A robotic molecular method
for in situ detection of marine invertebrate larvae. Mol Ecol Res 8:540–550
Jonston AW, Li Y, Ogilvie L (2005) Metagenomic marine nitrogen fixation- feast or famine? Trends
Microbiol 13:416–420
Karaiskou N, Triantafyllidis A, Alvarez P et al (2007) Horse mackerel egg identification using
DNA methodology. Mar Ecol 28:429–434
Kemp PF, Aller JY (2004) Bacterial diversity in aquatic and other environments: what 16S rDNA
libraries can tell us. FEMS Microbiol Ecol 47:161–177