396
Index
Oncorhynchus tshawytscha, 78, 86, 254, 259
Ontology, 346
Oomycetes, 182
Open Reading Frame (ORF), 75, 294–295
Ophelia sp, 19
Ophiuridae, 19
Ophiuroidea, 19
Optical tweezers, 40
Oreochromis niloticus, 95
Organizer, 158–159
Ortholog, 157, 196, 343, 345
Oryzias latipes, 237
Oscarella lobularis, 152
Osedax sp., 19
Ostrea edulis, 20, 87, 224–225
Ostreococcus, 184, 189–190, 192, 195–196,
304–306
Ostreococcus lucimarinus, 195, 304
Ostreococcus tauri, 184, 190, 192, 304–306
Outgroup, 129–130
Outlier, 80, 86, 88–89, 91–92, 254
P
Pacific abalone, 121, 225
Pacific oyster, 11, 18, 20, 87, 94, 214, 217–220,
225, 245, 248–249
Pagellus acarne, 20
Paired box, 151, 154, 164–165, 167
Paphia undulata, 19
Paralichthys olivaceus, 260
Paralogue, 343
Parborlasia corrugatus, 19
Parerythropodium fluvum fluvum, 20
Parhyale hawaiensis, 162
Pathogen-Associated Molecular Patterns
(PAMP), 244–245
Patterning, 87–88, 121, 144, 152, 155–158,
160, 162, 165
Paulinella chromatophora, 182
Pectinidae, 20
Pedigree analysis, 88
Pelagophyte, 191, 195
Penicillium chrysogenum, 292
Penicillium citrinum, 306
Pennate, 194
Peridinin, 198
Perkinsus spp., 243
Pfam, 56–57, 332, 334, 339–340, 348
Phaeocystis, 23, 186, 197
Phaeocystis Antarctica, 23, 186
Phaeodactylum tricornutum, 186, 192,
302–304, 306
Pheromone, 200
Phosphatase, 147, 300
Photic zone, 201
Photoreceptor, 151–152
Phrap, 52, 317–318
Phylochips, 13
Phylogenetic diversity, 54, 58–59, 61, 180,
188, 288
Phylogenomics, 127–132, 134–137
Phylophytia, 53–54
Phylotype, 8, 10, 15, 36, 189, 291
Phytoplankter, 192
Phytoplankton, 12, 39, 180, 187–188, 190–191,
194–195, 301
Picoeukaryotes, 189
Picoplankton, 10–13, 35, 252, 298
Pinctada martensii, 19
Pinna bicolor, 19
Placozoan, 126, 153–154
Planktonic, 35–36, 93, 188–199, 204
Planula, 154, 160
Plasticity, 18, 84, 99–100, 103–104, 163,
168, 234
Platichthys flesus, 260
Platynereis dumerilii, 163–164
Podocoryne carnea, 155
Polar, 100–105, 192
Polymerase Chain Reaction (PCR), 5, 10–11,
15, 18–21, 35, 38, 44, 49–50, 81–83,
91, 93, 188, 201, 216, 218, 227, 234,
242–244, 298, 317–320, 356–358, 369
Porifera, 123, 133, 151, 153
Porites astreoides, 18
Porphyra, 185, 202–203
Post-transcriptional modification (PTM), 340
Prasinophytes, 13, 189, 195, 197
Priapulid, 123, 125–126, 133, 161
Primary endosymbiosis, 181–182, 198
Primary producers, 180, 198–199
Primary production, 101, 180, 187
Primer, 44, 50, 316–317, 357
Probe/Reporter, 12–13, 40, 45, 197, 359–360
Product quality, 231–240
Product safety, 231–240
Protein Data Bank (PDB), 341, 350, 355–356
Proteome, 164–165, 229–231, 233, 235, 239,
262–263, 341, 349
Proteomics, 6–7, 11, 235, 237–238, 351
Proteorhodopsin, 36
Proterospongia, 146
Protists, 12–14, 183, 190
Protostomes, 162
Prymnesin toxins, 191
Prymnesiophyceae, 12, 186
Index
Oncorhynchus tshawytscha, 78, 86, 254, 259
Ontology, 346
Oomycetes, 182
Open Reading Frame (ORF), 75, 294–295
Ophelia sp, 19
Ophiuridae, 19
Ophiuroidea, 19
Optical tweezers, 40
Oreochromis niloticus, 95
Organizer, 158–159
Ortholog, 157, 196, 343, 345
Oryzias latipes, 237
Oscarella lobularis, 152
Osedax sp., 19
Ostrea edulis, 20, 87, 224–225
Ostreococcus, 184, 189–190, 192, 195–196,
304–306
Ostreococcus lucimarinus, 195, 304
Ostreococcus tauri, 184, 190, 192, 304–306
Outgroup, 129–130
Outlier, 80, 86, 88–89, 91–92, 254
P
Pacific abalone, 121, 225
Pacific oyster, 11, 18, 20, 87, 94, 214, 217–220,
225, 245, 248–249
Pagellus acarne, 20
Paired box, 151, 154, 164–165, 167
Paphia undulata, 19
Paralichthys olivaceus, 260
Paralogue, 343
Parborlasia corrugatus, 19
Parerythropodium fluvum fluvum, 20
Parhyale hawaiensis, 162
Pathogen-Associated Molecular Patterns
(PAMP), 244–245
Patterning, 87–88, 121, 144, 152, 155–158,
160, 162, 165
Paulinella chromatophora, 182
Pectinidae, 20
Pedigree analysis, 88
Pelagophyte, 191, 195
Penicillium chrysogenum, 292
Penicillium citrinum, 306
Pennate, 194
Peridinin, 198
Perkinsus spp., 243
Pfam, 56–57, 332, 334, 339–340, 348
Phaeocystis, 23, 186, 197
Phaeocystis Antarctica, 23, 186
Phaeodactylum tricornutum, 186, 192,
302–304, 306
Pheromone, 200
Phosphatase, 147, 300
Photic zone, 201
Photoreceptor, 151–152
Phrap, 52, 317–318
Phylochips, 13
Phylogenetic diversity, 54, 58–59, 61, 180,
188, 288
Phylogenomics, 127–132, 134–137
Phylophytia, 53–54
Phylotype, 8, 10, 15, 36, 189, 291
Phytoplankter, 192
Phytoplankton, 12, 39, 180, 187–188, 190–191,
194–195, 301
Picoeukaryotes, 189
Picoplankton, 10–13, 35, 252, 298
Pinctada martensii, 19
Pinna bicolor, 19
Placozoan, 126, 153–154
Planktonic, 35–36, 93, 188–199, 204
Planula, 154, 160
Plasticity, 18, 84, 99–100, 103–104, 163,
168, 234
Platichthys flesus, 260
Platynereis dumerilii, 163–164
Podocoryne carnea, 155
Polar, 100–105, 192
Polymerase Chain Reaction (PCR), 5, 10–11,
15, 18–21, 35, 38, 44, 49–50, 81–83,
91, 93, 188, 201, 216, 218, 227, 234,
242–244, 298, 317–320, 356–358, 369
Porifera, 123, 133, 151, 153
Porites astreoides, 18
Porphyra, 185, 202–203
Post-transcriptional modification (PTM), 340
Prasinophytes, 13, 189, 195, 197
Priapulid, 123, 125–126, 133, 161
Primary endosymbiosis, 181–182, 198
Primary producers, 180, 198–199
Primary production, 101, 180, 187
Primer, 44, 50, 316–317, 357
Probe/Reporter, 12–13, 40, 45, 197, 359–360
Product quality, 231–240
Product safety, 231–240
Protein Data Bank (PDB), 341, 350, 355–356
Proteome, 164–165, 229–231, 233, 235, 239,
262–263, 341, 349
Proteomics, 6–7, 11, 235, 237–238, 351
Proteorhodopsin, 36
Proterospongia, 146
Protists, 12–14, 183, 190
Protostomes, 162
Prymnesin toxins, 191
Prymnesiophyceae, 12, 186