394
Index
International Nucleotide Sequence Database
Collaboration (INSDC), 347–348,
351, 353
International Union of Pure and Applied
Chemistry (IUPAC), 326
Intertidal zone, 200
Intron conservation, 128–130, 164, 165
Intron conservation (pattern of), 128–130
Introners, 196
Introns, 77, 128, 155, 164, 169, 196, 335–336
Invasion, 93, 245
Invertebrates, 18, 39, 76, 79, 90–91, 103, 161,
163, 165, 244, 307
IODUS 40, 199
Istiophorus platypterus, 19
J
Japanese medaka, 237
Japanese pufferfish, 99, 214, 234, 252
Jassa slatteryi, 162
JAZZ, 52
JCoast, 57, 59
Joint Genome Institute (JGI), 55, 190, 192,
202, 220, 294–295
K
Kappaphycus, 202
Karenia brevis, 191, 199
Kb or Kbp, 11, 35–36, 41–47, 52–52, 189, 294
Kelp forests, 180
Key species, 7, 179
Kuenenia stuttgartiensis, 40
Kyoto Encyclopedia of Genes and Genomes
(KEGG), 51, 57, 328–329, 346
L
Laminaria digitata, 93, 199–200, 301
Laminariales, 199–200
Lancelet, 167
Larvae, 8–9, 16–21, 90, 124, 135–136, 152,
154, 160, 167–168, 250–251, 254
Larval, 17–18, 20–21, 87, 90–92, 94, 144–145,
151–152, 166, 168
Lasaea undulata, 19
Lateral gene transfer, 10, 177, 198
Lates calcarifer, 219
Leishmania braziliensis, 307
Libbie hyman, 122, 132
Library, 33, 35–39, 41–42, 44, 46–51, 75–76,
78, 132, 219–220, 234, 247, 299
Library size, 47–49
Life cycle, 12, 18, 21, 90–91, 152–154,
199–202
Limpet, 220
Linkage disequilibrium, 4–5, 86–88, 92
Linkage map, 76, 87, 89–90, 215–219
Lipopolysaccharides (LPS), 242, 244–245, 247
Local alignment, 329, 338, 344
Long-branch attraction, 126–127, 130
Lophius budegassa, 20
Lophophorates, 122, 125, 135
Lophotrochozoans, 123, 125–126,
133–136, 162
Lottia gigantea, 220
Lutjanus campechanus, 17
M
Macoma balthica, 20
Macoma sp, 18, 20
Macroalgae, 180, 199–204, 301
MAGE-TAB, 369–370
Magneto-FISH, 40
Magnifying Genomes, 55
MAGPIE, 56, 345
Major Histocompatibility Complex (MHC),
225, 235, 241, 261
Makaira nigricans, 19
Management, 5–6, 8, 15–18, 24, 86, 90,
236–238, 252, 254–256, 262–264, 315,
317, 323–326, 328–330, 338, 367
MA-plot, 363
Marine
food webs, 18, 180
Genomics Europe, 56, 214, 221–222, 241,
248, 331, 355
Marinitoga camini MV1075, 295
Marinitoga piezophila KA3, 295
Marinoboacter hydrocarbonoclasticus, 295
Marker-Assisted Selection (MAS), 223–225,
231, 233, 243, 263
Marthasterias glacialis, 19
Massive Parallel Signature Sequencing
(MPSS), 80, 94, 105, 221–222, 249
Match, 9, 85, 250, 337
Mate-pair, 319
Maximum likelihood, 3, 128, 130
Mediterranean mussel, 19, 214
Medusa, 154, 160
Meiofauna, 4, 14–15
Mercenaria, 20
Merluccius capensis, 19
Mesoderm, 122–123, 136, 156, 158–160
Mesotrophic, 190
Metabolomics, 7, 238
MetaGene, 15, 54, 56, 334
Metagenetics, 15
Metagenome, 33–62, 189, 191, 290–291,
293–299
Index
International Nucleotide Sequence Database
Collaboration (INSDC), 347–348,
351, 353
International Union of Pure and Applied
Chemistry (IUPAC), 326
Intertidal zone, 200
Intron conservation, 128–130, 164, 165
Intron conservation (pattern of), 128–130
Introners, 196
Introns, 77, 128, 155, 164, 169, 196, 335–336
Invasion, 93, 245
Invertebrates, 18, 39, 76, 79, 90–91, 103, 161,
163, 165, 244, 307
IODUS 40, 199
Istiophorus platypterus, 19
J
Japanese medaka, 237
Japanese pufferfish, 99, 214, 234, 252
Jassa slatteryi, 162
JAZZ, 52
JCoast, 57, 59
Joint Genome Institute (JGI), 55, 190, 192,
202, 220, 294–295
K
Kappaphycus, 202
Karenia brevis, 191, 199
Kb or Kbp, 11, 35–36, 41–47, 52–52, 189, 294
Kelp forests, 180
Key species, 7, 179
Kuenenia stuttgartiensis, 40
Kyoto Encyclopedia of Genes and Genomes
(KEGG), 51, 57, 328–329, 346
L
Laminaria digitata, 93, 199–200, 301
Laminariales, 199–200
Lancelet, 167
Larvae, 8–9, 16–21, 90, 124, 135–136, 152,
154, 160, 167–168, 250–251, 254
Larval, 17–18, 20–21, 87, 90–92, 94, 144–145,
151–152, 166, 168
Lasaea undulata, 19
Lateral gene transfer, 10, 177, 198
Lates calcarifer, 219
Leishmania braziliensis, 307
Libbie hyman, 122, 132
Library, 33, 35–39, 41–42, 44, 46–51, 75–76,
78, 132, 219–220, 234, 247, 299
Library size, 47–49
Life cycle, 12, 18, 21, 90–91, 152–154,
199–202
Limpet, 220
Linkage disequilibrium, 4–5, 86–88, 92
Linkage map, 76, 87, 89–90, 215–219
Lipopolysaccharides (LPS), 242, 244–245, 247
Local alignment, 329, 338, 344
Long-branch attraction, 126–127, 130
Lophius budegassa, 20
Lophophorates, 122, 125, 135
Lophotrochozoans, 123, 125–126,
133–136, 162
Lottia gigantea, 220
Lutjanus campechanus, 17
M
Macoma balthica, 20
Macoma sp, 18, 20
Macroalgae, 180, 199–204, 301
MAGE-TAB, 369–370
Magneto-FISH, 40
Magnifying Genomes, 55
MAGPIE, 56, 345
Major Histocompatibility Complex (MHC),
225, 235, 241, 261
Makaira nigricans, 19
Management, 5–6, 8, 15–18, 24, 86, 90,
236–238, 252, 254–256, 262–264, 315,
317, 323–326, 328–330, 338, 367
MA-plot, 363
Marine
food webs, 18, 180
Genomics Europe, 56, 214, 221–222, 241,
248, 331, 355
Marinitoga camini MV1075, 295
Marinitoga piezophila KA3, 295
Marinoboacter hydrocarbonoclasticus, 295
Marker-Assisted Selection (MAS), 223–225,
231, 233, 243, 263
Marthasterias glacialis, 19
Massive Parallel Signature Sequencing
(MPSS), 80, 94, 105, 221–222, 249
Match, 9, 85, 250, 337
Mate-pair, 319
Maximum likelihood, 3, 128, 130
Mediterranean mussel, 19, 214
Medusa, 154, 160
Meiofauna, 4, 14–15
Mercenaria, 20
Merluccius capensis, 19
Mesoderm, 122–123, 136, 156, 158–160
Mesotrophic, 190
Metabolomics, 7, 238
MetaGene, 15, 54, 56, 334
Metagenetics, 15
Metagenome, 33–62, 189, 191, 290–291,
293–299