294
J. Querellou et al.
Table 8.2
Marine microbial genomes of biotechnological interest
Organism
Size(kb) Orf s NCBI Ref
Institution
Targets, type of enzymes, type of
applications References (genomes;
biotech) Archae
Archaea
Aciduliprofundum boonei T469
Aeropyrum pernix K1
Hyperthermus butylicus DSM
5456
Nitrosopumilus maritimus SCM1
Pyrobaculum aerophilum IM2
Pyrococcus abyssi GE5
Pyrococcus furiosus JCM
8422
Pyrococcus horikoshii OT3
Pyrodictium abyssi DSM
6198
Pyrolobus fumarii
Staphylothermus marinus F1
Sulfolobus solfataricus P2
Thermococcus kodakaraensis KOD1
Thermococcus barophilus MP
Thermococcus onnurineus NA1
Thermococcus gammatolerans EJ3
2973
1669
1667
1645
2222
1765
1908
1738
∗
1850
1570
2292
2088
2059 ∗
∗
∗
1700
1602
1795
2605
1896
2125
1955
∗
2000
1570
2977
2306
∗
∗
∗
NZ ABSD00000000
NC_000854
NC_008818
NC_010085
NC_003364
NC_000868
NC_003413
NC_000961
∗
∗
NC_009033
NC_002754
NC_006624
NZ ABSF00000000
∗
∗
JCVI, Univ Portland
NITE
Eipdauros Biotech.
JGI
UCLA, Caltech
Genoscope
Univ.
Utah/Maryland
NITE, Univ Tokyo
JCVI, GBM-MGSP
Celera, Diversa
JGI
CBR
Kwansei Gakuin
Univ
JCVI, Prokarya
KORDI
IGM
Incomplete (proteases) (unpublished)
Proteases (Kawarabayasi et al. 1999)
Peptidases (Brügger et al. 2007)
∗
(unpublished)
Glycoside-hydrolases, proteases (Fitz-Gibbon
et al. 2002)
DNA processing; starch, cellulose, xylan
degrading; proteases (Cohen et al. 2003)
DNA processing; starch, cellulose, chitin
degrading; proteases (Vanfossen et al.
2008, Jenney and Adams 2008)
DNA processing; starch degrading; proteases,
hydrogenases (Kawarabayasi et al. 1998)
Starch, xylan degrading (unpublished);
Thersmostability/pressure; organic solutes
(unpublished); (Gonçalves et al. 2008)
Starch processing, protease, DNA processing
(unpublished)
Starch, cellulose degrading, proteases (She
et al. 2001)
DNA processing; starch degrading enzymes;
hydrohenases (Fukui et al. 2005, Kanai
et al. 2005)
Proteases, starch degrading, pressure
(unpublished)
DNA polymerase, Proteases, starch
processing (unpublished); (Lim et al. 2007)
DNA processing, proteases (unpublished)
J. Querellou et al.
Table 8.2
Marine microbial genomes of biotechnological interest
Organism
Size(kb) Orf s NCBI Ref
Institution
Targets, type of enzymes, type of
applications References (genomes;
biotech) Archae
Archaea
Aciduliprofundum boonei T469
Aeropyrum pernix K1
Hyperthermus butylicus DSM
5456
Nitrosopumilus maritimus SCM1
Pyrobaculum aerophilum IM2
Pyrococcus abyssi GE5
Pyrococcus furiosus JCM
8422
Pyrococcus horikoshii OT3
Pyrodictium abyssi DSM
6198
Pyrolobus fumarii
Staphylothermus marinus F1
Sulfolobus solfataricus P2
Thermococcus kodakaraensis KOD1
Thermococcus barophilus MP
Thermococcus onnurineus NA1
Thermococcus gammatolerans EJ3
2973
1669
1667
1645
2222
1765
1908
1738
∗
1850
1570
2292
2088
2059 ∗
∗
∗
1700
1602
1795
2605
1896
2125
1955
∗
2000
1570
2977
2306
∗
∗
∗
NZ ABSD00000000
NC_000854
NC_008818
NC_010085
NC_003364
NC_000868
NC_003413
NC_000961
∗
∗
NC_009033
NC_002754
NC_006624
NZ ABSF00000000
∗
∗
JCVI, Univ Portland
NITE
Eipdauros Biotech.
JGI
UCLA, Caltech
Genoscope
Univ.
Utah/Maryland
NITE, Univ Tokyo
JCVI, GBM-MGSP
Celera, Diversa
JGI
CBR
Kwansei Gakuin
Univ
JCVI, Prokarya
KORDI
IGM
Incomplete (proteases) (unpublished)
Proteases (Kawarabayasi et al. 1999)
Peptidases (Brügger et al. 2007)
∗
(unpublished)
Glycoside-hydrolases, proteases (Fitz-Gibbon
et al. 2002)
DNA processing; starch, cellulose, xylan
degrading; proteases (Cohen et al. 2003)
DNA processing; starch, cellulose, chitin
degrading; proteases (Vanfossen et al.
2008, Jenney and Adams 2008)
DNA processing; starch degrading; proteases,
hydrogenases (Kawarabayasi et al. 1998)
Starch, xylan degrading (unpublished);
Thersmostability/pressure; organic solutes
(unpublished); (Gonçalves et al. 2008)
Starch processing, protease, DNA processing
(unpublished)
Starch, cellulose degrading, proteases (She
et al. 2001)
DNA processing; starch degrading enzymes;
hydrohenases (Fukui et al. 2005, Kanai
et al. 2005)
Proteases, starch degrading, pressure
(unpublished)
DNA polymerase, Proteases, starch
processing (unpublished); (Lim et al. 2007)
DNA processing, proteases (unpublished)