7 Genomic Approaches in Aquaculture and Fisheries
283
Schena M, Shalon D, Davis RW et al (1995) Quantitative monitoring of gene expression patterns
with a complementary DNA microarray. Science 270:467–470
Schiavone R, Zilli L, Storelli C et al (2008) Identification by proteome analysis of muscle proteins
in sea bream (Sparus aurata). Eur Food Res Technol 227:1403–1410
Schlötterer C (2002) A microsatellite-based multilocus screen for the identification of local
selective sweeps. Genetics 160:753–763
Schlötterer C (2004) The evolution of molecular markers – just a matter of fashion?. Nat Rev Genet
5:63–69
Schluter D (1995) Adaptive radiation in sticklebacks: Trade-offs in feeding performance and
growth. Ecology 76:82–90
Schwab KJ, Neill FH, Le Guyader F et al (2001) Development of a reverse transcription-PCRDNA enzyme immunoassay for detection of Norwalk-like viruses and hepatitis A virus in stool
and shellfish. Appl Environ Microbiol 67:742–749
Sekino M, Hara M, Taniguchi N (2002) Loss of microsatellite and mitochondrial DNA variation
in hatchery strains of Japanese flounder Paralichthys olivaceus. Aquaculture 213:101–122
Sekino M, Hara M (2007) Linkage maps for the Pacific abalone (genus Haliotis) based on microsatellite DNA markers. Genetics 175:945–958
Senger F, Priat C, Hitte C et al (2006) The first radiation hybrid map of a perch-like fish: the
gilthead seabream (Sparus aurata L). Genomics 87:793–800
Seo J-K, Crawford JM, Stone KL et al (2005) Purification of a novel arthropod defensin from the
American oyster, Crassostrea virginica. Biochem Biophys Res Commun 338:1998–2004
Sepulcre MP, Sarropoulou E, Kotoulas G et al (2007) Vibrio anguillarum evades the immune
response of the bony fish sea bass (Dicentrarchus labrax L.) through the inhibition of leukocyte
respiratory burst and down-regulation of apoptotic caspases. Mol Immunol 44:3751–3757
Serapion J, Kucuktas H, Feng J et al (2004a) Bioinformatic mining of type I microsatellites from
expressed sequence tags of channel catfish (Ictalurus punctatus). Mar Biotechnol 6:364–377
Serapion J, Waldbieser GC, Wolters W et al (2004b) Development of type I markers in channel
catfish through intron sequencing. Anim Genet 35:463–466
Shangkuan YH, Show YS, Wang TM (1995) Multiplex polymerase chain reaction to detect
toxigenic Vibrio cholerae and to biotype Vibrio cholerae O1. J Appl Bacteriol 79:264–273
Shapiro MD, Bell MA, Kingsley DM (2006) Parallel genetic origins of pelvic reduction in
vertebrates. Proc Natl Acad Sci USA 103:13753–13758
Sick K (1965) Haemoglobin polymorphism of cod in the Baltic and the Danish Belt Sea. Hereditas
54:19–48
Sigholt T, Erikson U, Rustad T et al (1997) Handling stress and storage temperature affect meat
quality of farmed-raised Atlantic salmon (Salmo salar). J Food Sci 62:898–905
Silverman N, Maniatis T (2001) NF-kB signaling pathways in mammalian and insect innate
immunity. Genes Dev 15:2321–2342
Sinclair M (1988) Marine populations: An essay on population regulation and speciation.
University of Washington Press, Seattle
Smith CT, Antonovich A, Templin WD et al (2007) Impacts of marker class bias relative to
locus-specific variability on population inferences in Chinook salmon: A comparison of singlenucleotide polymorphisms with short tandem repeats and allozymes. Trans Am Fish Soc
136:1674–1687
Smith CT, Seeb LW (2008) Number of alleles as a predictor of the relative assignment accuracy
of short tandem repeat (STR) and single-nucleotide-polymorphism (SNP) baselines for chum
salmon. Trans Am Fish Soc 137:751–762
Solé-Cava AM, Thorpe JP (1991) High levels of genetic variation in natural populations of ma-rine
lower invertebrates. Biol J Linnean Soc 44:65–80
Somorjai IML, Danzmann RG, Ferguson MM (2003) Distribution of temperature tolerance quantitative trait loci in Arctic charr (Salvelinus alpinus) and inferred homologies in rainbow trout
(Oncorhynchus mykiss). Genetics 165:1443–1456
Sonesson AK (2005) A combination of walk-back and optimum contribution selection in fish: a
simulation study. Genet Sel Evol 37:587–599
283
Schena M, Shalon D, Davis RW et al (1995) Quantitative monitoring of gene expression patterns
with a complementary DNA microarray. Science 270:467–470
Schiavone R, Zilli L, Storelli C et al (2008) Identification by proteome analysis of muscle proteins
in sea bream (Sparus aurata). Eur Food Res Technol 227:1403–1410
Schlötterer C (2002) A microsatellite-based multilocus screen for the identification of local
selective sweeps. Genetics 160:753–763
Schlötterer C (2004) The evolution of molecular markers – just a matter of fashion?. Nat Rev Genet
5:63–69
Schluter D (1995) Adaptive radiation in sticklebacks: Trade-offs in feeding performance and
growth. Ecology 76:82–90
Schwab KJ, Neill FH, Le Guyader F et al (2001) Development of a reverse transcription-PCRDNA enzyme immunoassay for detection of Norwalk-like viruses and hepatitis A virus in stool
and shellfish. Appl Environ Microbiol 67:742–749
Sekino M, Hara M, Taniguchi N (2002) Loss of microsatellite and mitochondrial DNA variation
in hatchery strains of Japanese flounder Paralichthys olivaceus. Aquaculture 213:101–122
Sekino M, Hara M (2007) Linkage maps for the Pacific abalone (genus Haliotis) based on microsatellite DNA markers. Genetics 175:945–958
Senger F, Priat C, Hitte C et al (2006) The first radiation hybrid map of a perch-like fish: the
gilthead seabream (Sparus aurata L). Genomics 87:793–800
Seo J-K, Crawford JM, Stone KL et al (2005) Purification of a novel arthropod defensin from the
American oyster, Crassostrea virginica. Biochem Biophys Res Commun 338:1998–2004
Sepulcre MP, Sarropoulou E, Kotoulas G et al (2007) Vibrio anguillarum evades the immune
response of the bony fish sea bass (Dicentrarchus labrax L.) through the inhibition of leukocyte
respiratory burst and down-regulation of apoptotic caspases. Mol Immunol 44:3751–3757
Serapion J, Kucuktas H, Feng J et al (2004a) Bioinformatic mining of type I microsatellites from
expressed sequence tags of channel catfish (Ictalurus punctatus). Mar Biotechnol 6:364–377
Serapion J, Waldbieser GC, Wolters W et al (2004b) Development of type I markers in channel
catfish through intron sequencing. Anim Genet 35:463–466
Shangkuan YH, Show YS, Wang TM (1995) Multiplex polymerase chain reaction to detect
toxigenic Vibrio cholerae and to biotype Vibrio cholerae O1. J Appl Bacteriol 79:264–273
Shapiro MD, Bell MA, Kingsley DM (2006) Parallel genetic origins of pelvic reduction in
vertebrates. Proc Natl Acad Sci USA 103:13753–13758
Sick K (1965) Haemoglobin polymorphism of cod in the Baltic and the Danish Belt Sea. Hereditas
54:19–48
Sigholt T, Erikson U, Rustad T et al (1997) Handling stress and storage temperature affect meat
quality of farmed-raised Atlantic salmon (Salmo salar). J Food Sci 62:898–905
Silverman N, Maniatis T (2001) NF-kB signaling pathways in mammalian and insect innate
immunity. Genes Dev 15:2321–2342
Sinclair M (1988) Marine populations: An essay on population regulation and speciation.
University of Washington Press, Seattle
Smith CT, Antonovich A, Templin WD et al (2007) Impacts of marker class bias relative to
locus-specific variability on population inferences in Chinook salmon: A comparison of singlenucleotide polymorphisms with short tandem repeats and allozymes. Trans Am Fish Soc
136:1674–1687
Smith CT, Seeb LW (2008) Number of alleles as a predictor of the relative assignment accuracy
of short tandem repeat (STR) and single-nucleotide-polymorphism (SNP) baselines for chum
salmon. Trans Am Fish Soc 137:751–762
Solé-Cava AM, Thorpe JP (1991) High levels of genetic variation in natural populations of ma-rine
lower invertebrates. Biol J Linnean Soc 44:65–80
Somorjai IML, Danzmann RG, Ferguson MM (2003) Distribution of temperature tolerance quantitative trait loci in Arctic charr (Salvelinus alpinus) and inferred homologies in rainbow trout
(Oncorhynchus mykiss). Genetics 165:1443–1456
Sonesson AK (2005) A combination of walk-back and optimum contribution selection in fish: a
simulation study. Genet Sel Evol 37:587–599