7 Genomic Approaches in Aquaculture and Fisheries
281
Qiu L, Song L, Xu W et al (2007a) Molecular cloning and expression of a Toll receptor gene homologue from Zhikong Scallop, Chlamys farreri. Fish Shellfish Immunol 22:
451–466
Qiu L, Song L, Xu W et al (2007b) Identification and characterization of a myeloid differentiation factor 88 (MyD88) cDNA from Zhikong scallop Chlamys farreri. Fish Shellfish Immunol
23:614–623
Raeymaekers JAM, Van Houdt JKJ, Larmuseau MHD et al (2007) Divergent selection as revealed
by PST and QTL-based FST in three-spined stickleback (Gasterosteus aculeatus) populations
along a coastal-inland gradient. Mol Ecol 16:891–905
Raida MK, Buchmann K (2007) Temperature-dependent expression of immune-relevant genes in
rainbow trout following Yersinia ruckeri vaccination. Dis Aquat Organ 77:41–52
Rasmussen RS, Morrissey MT (2008) DNA-based methods for the identification of commercial
fish and seafood species. Compr Rev Food Sci Food Saf 7:280–295
Raymond M, Vaanto RL, Thomas F et al (1997) Heterozygote deficiency in the mussel Mytilus
edulis species complex revisited. Mar Ecol – Prog Ser 156:225–237
Reece KS, Bushek D, Graves JE (1997) Molecular markers for population genetic analysis of
Perkinsus marinus. Mol Mar Biol Biotechnol 6:197–206
Reese G, Viebranz J, Leong-Kee SM et al (2005) Reduced allergenic potency of VR9-1, a mutant
of the major shrimp allergen Pen a1 (Tropomyosin). J Immunol 175:8354–8364
Reid DP, Szanto A, Glebe B et al (2005) QTL for body weight and condition factor in Atlantic
salmon (Salmo salar): Comparative analysis with rainbow trout (Oncorhynchus mykiss) and
Arctic charr (Salvelinus alpinus). Heredity 94:166–172
Reid DP, Smith CA, Rommens M et al (2007) A genetic linkage map of Atlantic halibut
(Hippoglossus hippoglossus L.). Genetics 77:1193–1205
Rengmark AH, Slettan A, Skaala O et al (2006) Genetic variability in wild and farmed
Atlantic salmon (Salmo salar) strains estimated by SNP and microsatellites. Aquaculture 253:
229–237
Rescan PY, Montfort J, Ralliere C et al (2007) Dynamic gene expression in fish muscle during
recovery growth induced by a fasting-refeeding schedule. BMC Genomics 8:438
Reusch TBH, Wood TE (2007) Molecular ecology of global change. Mol Ecol 19:3973–3992
Rexroad CE, Rodriguez MF, Coulibaly I et al (2005) Comparative mapping of expressed sequence
tags containing microsatellites in rainbow trout (Oncorhynchus mykiss). BMC Genomics 6:54
Rise ML, Jones SR, Brown GD et al (2004) Microarray analyses identify molecular biomarkers
of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis
infection. Physiol Genomics 20:21–35
Rise ML, Douglas SE, Sakhrani D et al (2006) Multiple microarray platforms utilized for hepatic
gene expression profiling of GH transgenic Coho salmon with and without ration restriction. J
Mol Endocrinol 37:259–282
Roberge C, Einum S, Guderley H et al (2006) Rapid parallel evolutionary changes of gene
transcription profiles in farmed Atlantic salmon. Mol Ecol 15:9–20
Roberge C, Normandeau E, Einum S et al (2008) Genetic consequences of interbreeding between
farmed and wild Atlantic salmon: insights from the transcriptome. Mol Ecol 17:314–324
Rodriguez F, Navas JI (1995) A comparison of gill and hemolymph assays for the thioglycolate
diagnosis of Perkinsus atlanticus (Apicomplexa, Perkinsea) in clams, Ruditapes decussatus,
(L.) and Ruditapes philipinarum (Adams et Reeve). Aquaculture 132:145–152
Rodriguez MF, LaPatra S, Williams S et al (2004) Genetic markers associated with resistance to
infectious hematopoietic necrosis in rainbow trout and steelhead trout (Oncorhynchus mykiss)
backcrosses. Aquaculture 241:93–115
Roessig JM, Woodley CM, Cech JJ et al (2004) Effects of global climate change on marine and
estuarine fishes and fisheries. Rev Fish Biol Fisher 14:251–275
Rogers SM, Bernatchez L (2005) Integrating QTL mapping and genomic scans towards the characterization of candidate loci under parallel directional selection in the lake whitefish (Coregonus
clupeaformis). Mol Ecol 14:351–361
281
Qiu L, Song L, Xu W et al (2007a) Molecular cloning and expression of a Toll receptor gene homologue from Zhikong Scallop, Chlamys farreri. Fish Shellfish Immunol 22:
451–466
Qiu L, Song L, Xu W et al (2007b) Identification and characterization of a myeloid differentiation factor 88 (MyD88) cDNA from Zhikong scallop Chlamys farreri. Fish Shellfish Immunol
23:614–623
Raeymaekers JAM, Van Houdt JKJ, Larmuseau MHD et al (2007) Divergent selection as revealed
by PST and QTL-based FST in three-spined stickleback (Gasterosteus aculeatus) populations
along a coastal-inland gradient. Mol Ecol 16:891–905
Raida MK, Buchmann K (2007) Temperature-dependent expression of immune-relevant genes in
rainbow trout following Yersinia ruckeri vaccination. Dis Aquat Organ 77:41–52
Rasmussen RS, Morrissey MT (2008) DNA-based methods for the identification of commercial
fish and seafood species. Compr Rev Food Sci Food Saf 7:280–295
Raymond M, Vaanto RL, Thomas F et al (1997) Heterozygote deficiency in the mussel Mytilus
edulis species complex revisited. Mar Ecol – Prog Ser 156:225–237
Reece KS, Bushek D, Graves JE (1997) Molecular markers for population genetic analysis of
Perkinsus marinus. Mol Mar Biol Biotechnol 6:197–206
Reese G, Viebranz J, Leong-Kee SM et al (2005) Reduced allergenic potency of VR9-1, a mutant
of the major shrimp allergen Pen a1 (Tropomyosin). J Immunol 175:8354–8364
Reid DP, Szanto A, Glebe B et al (2005) QTL for body weight and condition factor in Atlantic
salmon (Salmo salar): Comparative analysis with rainbow trout (Oncorhynchus mykiss) and
Arctic charr (Salvelinus alpinus). Heredity 94:166–172
Reid DP, Smith CA, Rommens M et al (2007) A genetic linkage map of Atlantic halibut
(Hippoglossus hippoglossus L.). Genetics 77:1193–1205
Rengmark AH, Slettan A, Skaala O et al (2006) Genetic variability in wild and farmed
Atlantic salmon (Salmo salar) strains estimated by SNP and microsatellites. Aquaculture 253:
229–237
Rescan PY, Montfort J, Ralliere C et al (2007) Dynamic gene expression in fish muscle during
recovery growth induced by a fasting-refeeding schedule. BMC Genomics 8:438
Reusch TBH, Wood TE (2007) Molecular ecology of global change. Mol Ecol 19:3973–3992
Rexroad CE, Rodriguez MF, Coulibaly I et al (2005) Comparative mapping of expressed sequence
tags containing microsatellites in rainbow trout (Oncorhynchus mykiss). BMC Genomics 6:54
Rise ML, Jones SR, Brown GD et al (2004) Microarray analyses identify molecular biomarkers
of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis
infection. Physiol Genomics 20:21–35
Rise ML, Douglas SE, Sakhrani D et al (2006) Multiple microarray platforms utilized for hepatic
gene expression profiling of GH transgenic Coho salmon with and without ration restriction. J
Mol Endocrinol 37:259–282
Roberge C, Einum S, Guderley H et al (2006) Rapid parallel evolutionary changes of gene
transcription profiles in farmed Atlantic salmon. Mol Ecol 15:9–20
Roberge C, Normandeau E, Einum S et al (2008) Genetic consequences of interbreeding between
farmed and wild Atlantic salmon: insights from the transcriptome. Mol Ecol 17:314–324
Rodriguez F, Navas JI (1995) A comparison of gill and hemolymph assays for the thioglycolate
diagnosis of Perkinsus atlanticus (Apicomplexa, Perkinsea) in clams, Ruditapes decussatus,
(L.) and Ruditapes philipinarum (Adams et Reeve). Aquaculture 132:145–152
Rodriguez MF, LaPatra S, Williams S et al (2004) Genetic markers associated with resistance to
infectious hematopoietic necrosis in rainbow trout and steelhead trout (Oncorhynchus mykiss)
backcrosses. Aquaculture 241:93–115
Roessig JM, Woodley CM, Cech JJ et al (2004) Effects of global climate change on marine and
estuarine fishes and fisheries. Rev Fish Biol Fisher 14:251–275
Rogers SM, Bernatchez L (2005) Integrating QTL mapping and genomic scans towards the characterization of candidate loci under parallel directional selection in the lake whitefish (Coregonus
clupeaformis). Mol Ecol 14:351–361