7 Genomic Approaches in Aquaculture and Fisheries
267
Castro J, Pino A, Hermida M et al (2006) A microsatellite marker tool for parentage analysis in Senegal sole (Solea senegalensis): Genotyping errors, null alleles and conformance to
theoretical assumptions. Aquaculture 261:1194–1203
Castro J, Pino A, Hermida M et al (2007) A microsatellite marker tool for parentage assessment in
gilthead seabream (Sparus aurata). Aquaculture 272:S210–S216
Cerda J, Mercade J, Lozano JJ et al (2008) Genomic resources for a commercial flatfish,
the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and
development of the bioinformatic platform Soleamold. BMC Genomics 9:508
Charlet M, Chernysh S, Philippe H et al (1996) Innate immunity: isolation of several cysteinerich antimicrobial peptides from the blood of a mollusc, Mytilus edulis. J Biol Chem 271:
21808–21813
Cheng T (1981) Bivalves. In: Ratcliffe NA, Rowley A (eds) Invertebrate blood cells. Academic
Press, London
Chistiakov DA, Hellemans B, Volckaert FAM (2006) Microsatellites and their genomic distribution, evolution, function and applications: A review with special reference to fish genetics.
Aquaculture 255:1–29
Choquet G, Soudant P, Lambert C et al (2003) Reduction of adhesion properties of Ruditapes
philippinarum hemocytes exposed to Vibrio tapetis. Dis Aquat Organ 57:109–116
Christiansen FB, Frydenberg O (1974) Geographical patterns of 4 polymorphisms in Zoarces
viviparus as evidence of selection. Genetics 77:765–770
Clark AG, Hubisz MJ, Bustamante CD et al (2005) Ascertainment bias in studies of human
genome-wide polymorphism. Genome Res 15:1496–1502
Cnaani A, Hallerman EM, Ron M et al (2003) Detection of a chromosomal region with two quantitative trait loci, affecting cold tolerance and fish size, in an F2 tilapia hybrid. Aquaculture
223:117–128
Cnaani A, Zilberman N, Tinman S et al (2004) Genome-scan analysis for quantitative trait loci in
an F-2 tilapia hybrid. Mol Genet Genomics 272:162–172
Cnaani A, Hulata G (2008) Tilapias. In: Kocher TD, Kole C (eds) Genome mapping and genomics
in animals, vol 2. Springer-Heidelberg, Berlin
Cochennec N, Le Roux F, Berthe F et al (2000) Detection of Bonamia ostreae based on small
subunit ribosomal probe. J Invertebr Pathol 76:26–32
Colborn J, Crabtree RE, Shaklee JB et al (2001) The evolutionary enigma of bonefishes (Albula
spp.): Cryptic species and ancient separations in a globally distributed shorefish. Evolution
55:807–820
Coltman DW (2008) Molecular ecological approaches to studying the evolutionary impact of
selective harvesting in wildlife. Mol Ecol 17:221–235
Cossins AR, Crawford DL (2005) Opinion – fish as models for environmental genomics. Nat Rev
Genet 6:324–333
Cossins A, Fraser J, Hughes M et al (2006) Post-genomic approaches to understanding the
mechanisms of environmentally induced phenotypic plasticity. J Exp Biol 209:2328–2336
Cowen RK, Paris CB, Srinivasan A (2006) Scaling of connectivity in marine populations. Science
311:522–527
Coyne JA, Orr HA (2004) Speciation. Sinauer Associates, MA
Cuesta A, Meseguer J, Esteban MA (2008) The antimicrobial peptide hepcidin exerts an important
role in the innate immunity against bacteria in the bony fish gilthead seabream. Mol Immunol
45:2333–2342
Cunningham C, Hikima JI, Jenny MJ et al (2006) New resources for marine genomics: Bacterial
artificial chromosome libraries for the eastern and pacific oysters (Crassostrea virginica and C.
gigas). Mar Biotechnol 8:521–533
Curole JP, Hedgecock D (2005) High frequency of SNPs in the Pacific oyster genome. http://intlpag.org/13/abstracts/PAG13_W026.html
Cushing DH (1969) Regularity of spawning season of some fishes. Journal du conseil international
de l’exploitation de la mer 33:81–92
267
Castro J, Pino A, Hermida M et al (2006) A microsatellite marker tool for parentage analysis in Senegal sole (Solea senegalensis): Genotyping errors, null alleles and conformance to
theoretical assumptions. Aquaculture 261:1194–1203
Castro J, Pino A, Hermida M et al (2007) A microsatellite marker tool for parentage assessment in
gilthead seabream (Sparus aurata). Aquaculture 272:S210–S216
Cerda J, Mercade J, Lozano JJ et al (2008) Genomic resources for a commercial flatfish,
the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and
development of the bioinformatic platform Soleamold. BMC Genomics 9:508
Charlet M, Chernysh S, Philippe H et al (1996) Innate immunity: isolation of several cysteinerich antimicrobial peptides from the blood of a mollusc, Mytilus edulis. J Biol Chem 271:
21808–21813
Cheng T (1981) Bivalves. In: Ratcliffe NA, Rowley A (eds) Invertebrate blood cells. Academic
Press, London
Chistiakov DA, Hellemans B, Volckaert FAM (2006) Microsatellites and their genomic distribution, evolution, function and applications: A review with special reference to fish genetics.
Aquaculture 255:1–29
Choquet G, Soudant P, Lambert C et al (2003) Reduction of adhesion properties of Ruditapes
philippinarum hemocytes exposed to Vibrio tapetis. Dis Aquat Organ 57:109–116
Christiansen FB, Frydenberg O (1974) Geographical patterns of 4 polymorphisms in Zoarces
viviparus as evidence of selection. Genetics 77:765–770
Clark AG, Hubisz MJ, Bustamante CD et al (2005) Ascertainment bias in studies of human
genome-wide polymorphism. Genome Res 15:1496–1502
Cnaani A, Hallerman EM, Ron M et al (2003) Detection of a chromosomal region with two quantitative trait loci, affecting cold tolerance and fish size, in an F2 tilapia hybrid. Aquaculture
223:117–128
Cnaani A, Zilberman N, Tinman S et al (2004) Genome-scan analysis for quantitative trait loci in
an F-2 tilapia hybrid. Mol Genet Genomics 272:162–172
Cnaani A, Hulata G (2008) Tilapias. In: Kocher TD, Kole C (eds) Genome mapping and genomics
in animals, vol 2. Springer-Heidelberg, Berlin
Cochennec N, Le Roux F, Berthe F et al (2000) Detection of Bonamia ostreae based on small
subunit ribosomal probe. J Invertebr Pathol 76:26–32
Colborn J, Crabtree RE, Shaklee JB et al (2001) The evolutionary enigma of bonefishes (Albula
spp.): Cryptic species and ancient separations in a globally distributed shorefish. Evolution
55:807–820
Coltman DW (2008) Molecular ecological approaches to studying the evolutionary impact of
selective harvesting in wildlife. Mol Ecol 17:221–235
Cossins AR, Crawford DL (2005) Opinion – fish as models for environmental genomics. Nat Rev
Genet 6:324–333
Cossins A, Fraser J, Hughes M et al (2006) Post-genomic approaches to understanding the
mechanisms of environmentally induced phenotypic plasticity. J Exp Biol 209:2328–2336
Cowen RK, Paris CB, Srinivasan A (2006) Scaling of connectivity in marine populations. Science
311:522–527
Coyne JA, Orr HA (2004) Speciation. Sinauer Associates, MA
Cuesta A, Meseguer J, Esteban MA (2008) The antimicrobial peptide hepcidin exerts an important
role in the innate immunity against bacteria in the bony fish gilthead seabream. Mol Immunol
45:2333–2342
Cunningham C, Hikima JI, Jenny MJ et al (2006) New resources for marine genomics: Bacterial
artificial chromosome libraries for the eastern and pacific oysters (Crassostrea virginica and C.
gigas). Mar Biotechnol 8:521–533
Curole JP, Hedgecock D (2005) High frequency of SNPs in the Pacific oyster genome. http://intlpag.org/13/abstracts/PAG13_W026.html
Cushing DH (1969) Regularity of spawning season of some fishes. Journal du conseil international
de l’exploitation de la mer 33:81–92