6 Genomics of Marine Algae
205
genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science
306:79–86
Asamizu E, Nakajima M, Kitade Y, Saga N, Nakamura Y, Tabata S (2003) Comparison of RNA
expression profiles between two generations of Porphyra yezoensis (Rhodophyta), based on
expressed sequence tag frequency analysis. J Phycol 39:923–330
Bachvaroff TR, Concepcion GT, Rogers CR, Herman EM, Delwiche CF (2004) Dinoflagellate
expressed sequence tags data indicate massive transfer of chloroplast genes to the nuclear
genome. Protist 155:65–78
Bachvaroff TR, Place AR (2008) From stop to start: tandem gene arrangement, copy number and
trans-splicing sites in the dinoflagellate Amphidinium carterae. PLoS ONE 3:e2929
Baldauf SL (2008) An overview of the phylogeny and diversity of eukaryotes. J Syst Evol 46:
263–273
Bartsch I, Wiencke C, Bischof K, Buchholz CM, Buck BH, Eggert A, Feuerpfeil P, Hanelt D,
Jacobsen S, Karez R, Karsten U, Molis M, Roleda M, Schubert H, Schumann R, Valentin
K, Weinberger F, Wiese J (2008) The genus Laminaria sensu lato: recent insights and
developments. Eur J Phycol 43:1–86
Bauer I, Maranda L,Young KA, Shimizu Y, Fairchild C, Cornell L, MacBeth J, Huang S (1995)
Isolation and structure of caribenolide I, a highly potent antitumor macrolide from a culture free-swimming Caribbean dinoflagellate, Amphidinium sp. S1-36-5. J Org Chem 60:
1084–1086
Berger F, Taylor A, Brownlee C (1994) Cell fate determination by the cell wall in early Fucus
development. Science 263:1421–1423
Bhattacharya D, Yoon HS, Hackett JD (2004) Photosynthetic eukaryotes unite: endosymbiosis
connects the dots. Bioessays 26:50–60
Bouarab K, Potin P, Correa J, Kloareg B (1999) Sulfated oligosaccharides mediate the interaction between a marine red alga and its green algal pathogenic endophyte. Plant Cell 11(9):
1635–1650
Bouget FY, Berger F, Brownlee C (1998) Position dependent control of cell fate in the Fucus
embryo: role of intercellular communication. Development 125:1999–2008
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C,
Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde
M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti
A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M,
Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth
PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna
M, McGinnis K, Medlin LK, Montsant A, Secq MP, Napoli C, Obornik M, Parker MS, Petit
JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H,
Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A,
Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev
IV (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes.
Nature 456:239–244
Brownlee C, Bouget FY, Corellou F (2001) Choosing sides: establishment of polarity in zygotes
of fucoid algae. Semin Cell Dev Biol 12:345–351
Bryhni E (1974) Control of morphogenesis in the multicellular alga Ulva mutabilis. Defect in cell
wall production. Dev Biol 37:273–277
Butterfield NJ (2000) Bangiomorpha pubescens n. gen., n. sp.; implications for the evolution of sex,
multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes. Paleobiol
26:386–404
Charrier B, Coelho SM, Le Bail A, Tonon T, Michel G, Potin P, Kloareg B, Boyen C, Peters AF,
Cock JM (2008) Development and physiology of the brown alga Ectocarpus siliculosus: two
centuries of research. New Phytol 177:319–332
Cheney D, Metz B, Stiller J (2001) Agrobacterium-mediated genetic transformation in the
macroscopic marine red alga Porphyra yezoensis. J Phycol 37:11
205
genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science
306:79–86
Asamizu E, Nakajima M, Kitade Y, Saga N, Nakamura Y, Tabata S (2003) Comparison of RNA
expression profiles between two generations of Porphyra yezoensis (Rhodophyta), based on
expressed sequence tag frequency analysis. J Phycol 39:923–330
Bachvaroff TR, Concepcion GT, Rogers CR, Herman EM, Delwiche CF (2004) Dinoflagellate
expressed sequence tags data indicate massive transfer of chloroplast genes to the nuclear
genome. Protist 155:65–78
Bachvaroff TR, Place AR (2008) From stop to start: tandem gene arrangement, copy number and
trans-splicing sites in the dinoflagellate Amphidinium carterae. PLoS ONE 3:e2929
Baldauf SL (2008) An overview of the phylogeny and diversity of eukaryotes. J Syst Evol 46:
263–273
Bartsch I, Wiencke C, Bischof K, Buchholz CM, Buck BH, Eggert A, Feuerpfeil P, Hanelt D,
Jacobsen S, Karez R, Karsten U, Molis M, Roleda M, Schubert H, Schumann R, Valentin
K, Weinberger F, Wiese J (2008) The genus Laminaria sensu lato: recent insights and
developments. Eur J Phycol 43:1–86
Bauer I, Maranda L,Young KA, Shimizu Y, Fairchild C, Cornell L, MacBeth J, Huang S (1995)
Isolation and structure of caribenolide I, a highly potent antitumor macrolide from a culture free-swimming Caribbean dinoflagellate, Amphidinium sp. S1-36-5. J Org Chem 60:
1084–1086
Berger F, Taylor A, Brownlee C (1994) Cell fate determination by the cell wall in early Fucus
development. Science 263:1421–1423
Bhattacharya D, Yoon HS, Hackett JD (2004) Photosynthetic eukaryotes unite: endosymbiosis
connects the dots. Bioessays 26:50–60
Bouarab K, Potin P, Correa J, Kloareg B (1999) Sulfated oligosaccharides mediate the interaction between a marine red alga and its green algal pathogenic endophyte. Plant Cell 11(9):
1635–1650
Bouget FY, Berger F, Brownlee C (1998) Position dependent control of cell fate in the Fucus
embryo: role of intercellular communication. Development 125:1999–2008
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C,
Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde
M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti
A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M,
Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth
PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna
M, McGinnis K, Medlin LK, Montsant A, Secq MP, Napoli C, Obornik M, Parker MS, Petit
JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H,
Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A,
Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev
IV (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes.
Nature 456:239–244
Brownlee C, Bouget FY, Corellou F (2001) Choosing sides: establishment of polarity in zygotes
of fucoid algae. Semin Cell Dev Biol 12:345–351
Bryhni E (1974) Control of morphogenesis in the multicellular alga Ulva mutabilis. Defect in cell
wall production. Dev Biol 37:273–277
Butterfield NJ (2000) Bangiomorpha pubescens n. gen., n. sp.; implications for the evolution of sex,
multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes. Paleobiol
26:386–404
Charrier B, Coelho SM, Le Bail A, Tonon T, Michel G, Potin P, Kloareg B, Boyen C, Peters AF,
Cock JM (2008) Development and physiology of the brown alga Ectocarpus siliculosus: two
centuries of research. New Phytol 177:319–332
Cheney D, Metz B, Stiller J (2001) Agrobacterium-mediated genetic transformation in the
macroscopic marine red alga Porphyra yezoensis. J Phycol 37:11