110
M.S. Clark et al.
Feder ME (2007) Evolvability of physiological and biochemical traits: evolutionary mechanisms
including and beyond single-nucleotide mutation. J Exp Biol 310:1653–1660
Feder ME, Mitchell-Olds T (2003) Evolutionary and ecological functional genomics. Nat Rev
Genet 4:649–655
Fernandes JMO, MacKenzie MG, Kinghorn JR, Johnston IA (2007) FoxK1 splice variants show
developmental stage-specific plasticity of expression with temperature in the tiger pufferfish.
J Exp Biol 210:3461–3472
Fernandes JMO, MacKenzie MG, Wright PA, Steele SL, Suzuki Y, Kinghorn JR, Johnston IA
(2006) Myogenin in model pufferfish species: comparative genomic analysis and thermal
plasticity of expression during early development. Comp Biochem Physiol D 1:35–45
Fields PA, Kim Y-S, Carpenter JF, Somero GN (2002) Temperature adaptation in Gillichthys
(Teleost: Gobiidae) A4-lactate dehydrogenases: identical primary structures produce subtly
different conformations. J Exp Biol 205:1293–1303
Fields PA, Somero GN (1998) Hot spots in cold adaptation: localised increases in conformational
flexibility in lactate dehydrogenase A4 orthologs of Antarctic Notothenioid fishes. Proc Natl
Acad Sci USA 95:11476–11481
Flannery BG, Wenburg JK, Gharrett AJ (2007) Variation of amplified fragment length polymorphisms in yukon river chum salmon: population structure and application to mixed-stock
analysis. Trans Am Fish Soc 136:911–925
Ford MJ (2002) Applications of selective neutrality tests to molecular ecology. Mol Ecol 11:
1245–1262
Franch R, Louro B, Tsalavouta M, Chatziplis D, Tsigenopoulos CS, Sarropoulou E, Antonello
J, Magoulas A, Mylonas CC, Babbucci M, Patarnello T, Power DM, Kotoulas G, Bargelloni
L (2006) A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L.. Genetics
174:851–861
Fuchs Y, Douek J, Rinkevich B, Ben-Shlomo R (2006) Gene diversity and mode of reproduction
in the brooded larvae of the coral Heteroxenia fuscescens. J Hered 97:493–498
Gaill F, Mann K, Wiedemann H, Engel J, Timpl R (1995) Structural comparison of cuticle and
interstitial collagens from annelids living in shallow sea-water and at deep-sea hydrothermal
vents. J Mol Biol 246:284–294
Garoia F, Guarniero I, Grifoni D, Marzola S, Tinti F (2007) Comparative analysis of AFLPs
and SSRs efficiency population genetic structure of Mediterranean Solea vulgaris. Mol Ecol
16:1377–1387
Gibson G (2002) Microarrays in ecology and evolution: a preview. Mol Ecol 11:17–24
Gibson G, Riley-Berger R, Harshman L, Kopp A, Vacha S, Nuzhdin S, Wayne M (2004) Extensive
sex-specific nonadditivity of gene expression in Drosophila melanogaster. Genetics 167:
1791–1799
Gort G, Koopman WJM, Stein A (2006) Fragment length distributions and collision probabilities
for AFLP markers. Biometrics 62:1107–1115
Govoroun M, Le Gac F, Guiguen Y (2006) Generation of a large-scale repertoire of Expressed
Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries. BMC Genom
doi:10.1186/1471-2164-7-196
Gracey AY, Fraser EJ, Li W, Fang Y, Taylor RR, Rogers J, Brass A, Cossins AR (2004) Coping with
cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate.
Proc Natl Acad Sci USA 101:16970–16975
Gruenthal KM, Acheson LK, Burton RS (2007) Genetic structure of natural populations of
California red abalone (Haliotis rufescens) using multiple genetic markers. Mar Biol 152:
1237–1248
Gruenthal KM, Burton RS (2008) Genetic structure of natural populations of the California black
abalone (Haliotis cracherodii Leach, 1814), a candidate for endangered species status. J Exp
Mar Biol Ecol 355:47–58
Guinand B, Lemaire C, Bonhomme F (2004) How to detect polymorphisms undergoing selection in
marine fishes? A review of methods and case studies, including flatfishes. J Sea Res 51:167–182
M.S. Clark et al.
Feder ME (2007) Evolvability of physiological and biochemical traits: evolutionary mechanisms
including and beyond single-nucleotide mutation. J Exp Biol 310:1653–1660
Feder ME, Mitchell-Olds T (2003) Evolutionary and ecological functional genomics. Nat Rev
Genet 4:649–655
Fernandes JMO, MacKenzie MG, Kinghorn JR, Johnston IA (2007) FoxK1 splice variants show
developmental stage-specific plasticity of expression with temperature in the tiger pufferfish.
J Exp Biol 210:3461–3472
Fernandes JMO, MacKenzie MG, Wright PA, Steele SL, Suzuki Y, Kinghorn JR, Johnston IA
(2006) Myogenin in model pufferfish species: comparative genomic analysis and thermal
plasticity of expression during early development. Comp Biochem Physiol D 1:35–45
Fields PA, Kim Y-S, Carpenter JF, Somero GN (2002) Temperature adaptation in Gillichthys
(Teleost: Gobiidae) A4-lactate dehydrogenases: identical primary structures produce subtly
different conformations. J Exp Biol 205:1293–1303
Fields PA, Somero GN (1998) Hot spots in cold adaptation: localised increases in conformational
flexibility in lactate dehydrogenase A4 orthologs of Antarctic Notothenioid fishes. Proc Natl
Acad Sci USA 95:11476–11481
Flannery BG, Wenburg JK, Gharrett AJ (2007) Variation of amplified fragment length polymorphisms in yukon river chum salmon: population structure and application to mixed-stock
analysis. Trans Am Fish Soc 136:911–925
Ford MJ (2002) Applications of selective neutrality tests to molecular ecology. Mol Ecol 11:
1245–1262
Franch R, Louro B, Tsalavouta M, Chatziplis D, Tsigenopoulos CS, Sarropoulou E, Antonello
J, Magoulas A, Mylonas CC, Babbucci M, Patarnello T, Power DM, Kotoulas G, Bargelloni
L (2006) A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L.. Genetics
174:851–861
Fuchs Y, Douek J, Rinkevich B, Ben-Shlomo R (2006) Gene diversity and mode of reproduction
in the brooded larvae of the coral Heteroxenia fuscescens. J Hered 97:493–498
Gaill F, Mann K, Wiedemann H, Engel J, Timpl R (1995) Structural comparison of cuticle and
interstitial collagens from annelids living in shallow sea-water and at deep-sea hydrothermal
vents. J Mol Biol 246:284–294
Garoia F, Guarniero I, Grifoni D, Marzola S, Tinti F (2007) Comparative analysis of AFLPs
and SSRs efficiency population genetic structure of Mediterranean Solea vulgaris. Mol Ecol
16:1377–1387
Gibson G (2002) Microarrays in ecology and evolution: a preview. Mol Ecol 11:17–24
Gibson G, Riley-Berger R, Harshman L, Kopp A, Vacha S, Nuzhdin S, Wayne M (2004) Extensive
sex-specific nonadditivity of gene expression in Drosophila melanogaster. Genetics 167:
1791–1799
Gort G, Koopman WJM, Stein A (2006) Fragment length distributions and collision probabilities
for AFLP markers. Biometrics 62:1107–1115
Govoroun M, Le Gac F, Guiguen Y (2006) Generation of a large-scale repertoire of Expressed
Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries. BMC Genom
doi:10.1186/1471-2164-7-196
Gracey AY, Fraser EJ, Li W, Fang Y, Taylor RR, Rogers J, Brass A, Cossins AR (2004) Coping with
cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate.
Proc Natl Acad Sci USA 101:16970–16975
Gruenthal KM, Acheson LK, Burton RS (2007) Genetic structure of natural populations of
California red abalone (Haliotis rufescens) using multiple genetic markers. Mar Biol 152:
1237–1248
Gruenthal KM, Burton RS (2008) Genetic structure of natural populations of the California black
abalone (Haliotis cracherodii Leach, 1814), a candidate for endangered species status. J Exp
Mar Biol Ecol 355:47–58
Guinand B, Lemaire C, Bonhomme F (2004) How to detect polymorphisms undergoing selection in
marine fishes? A review of methods and case studies, including flatfishes. J Sea Res 51:167–182