Part C | 20
526 Part C Marine Genomics
20.37
T. Thorsen, S.J. Maerkl, S.R. Quake: Microfluidic
large-scale integration, Science 298(5593), 580–
584 (2002)
20.38
E.A. Ottesen, J.W. Hong, S.R. Quake, J.R. Leadbetter: Microfluidic digital PCR enables multigene
analysis of individual environmental bacteria,
Science 314(5804), 1464–1467 (2006)
20.39
P.C. Blainey, A.C. Mosier, A. Potanina, C.A. Francis,
S.R. Quake: Genome of a low-salinity ammoniaoxidizing archaeon determined by single-cell
and metagenomic analysis, PLoS ONE 6(2)(5804),
e16626 (2011)
20.40
K.C. Neuman, S.M. Block: Optical trapping, Rev.
Sci. Instrum. 75(9), 2787–2809 (2004)
20.41
A. Ashkin, J.M. Dziedzic, J.E. Bjorkholm, S. Chu:
Observation of a single-beam gradient force optical trap for dielectric particles, Opt. Lett. 11(5),
288 (1986)
20.42
K. Leung, H. Zahn, T. Leaver, K.M. Konwar,
N.W. Hanson, A.P. Page, C.C. Lo, P.S. Chain,
S.J. Hallam, C.L. Hansen: A programmable
droplet-based microfluidic device applied to
multiparameter analysis of single microbes and
microbial communities, Proc. Natl. Acad. Sci. USA
109(20), 7665–7670 (2012)
20.43
A. Funfak, A. Brösing, M. Brand, J.M. Köhler: Micro
fluid segment technique for screening and development studies on Danio rerio embryos, Lab Chip
7(9), 1132–1138 (2007)
20.44
J. Akagi: Miniaturized embryo array for automated trapping, immobilization and microperfusion of zebrafish embryos, PLoS One 7(5), e36630
(2011)
20.45
B.K. Swan, M. Martinez-Garcia, C.M. Preston,
A. Sczyrba, T. Woyke, D. Lamy, T. Reinthaler,
N.J. Poulton, E.D. Masland, M.L. Gomez, M.E. Sieracki, E.F. DeLong, G.J. Herndl, R. Stepanauskas:
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean, Science 333(6047), 1296–1300 (2011)
20.46
G. Benazzi, D. Holmes, T. Sun, M.C. Mowlem,
H. Morgan: Discrimination and analysis of phytoplankton using a microfluidic cytometer, IET
Nanobiotechnology 1(6), 94–101 (2007)
20.47
S. Sasaki, T. Okamoto, T. Fujii: Bioluminescence
intensity difference observed in luminous bacteria groups with different motility, Lett. Appl.
Microbiol. 48(3), 313–317 (2009)
20.48
H. Yin, D. Marshall: Microfluidics for single cell
analysis, Curr. Opin. Biotechnol. 23(1), 110–119
(2011)
20.49
Y. Taniguchi, P.J. Choi, G.W. Li, H. Chen, M. Babu,
J. Hearn, A. Emili, X.S. Xie: Quantifying E. coli proteome and transcriptome with single-molecule
sensitivity in single cells, Science 329(5991), 533–
538 (2010)
20.50
J.W. Hong, V. Studer, G. Hang, W.F. Anderson,
S.R. Quake: A nanoliter-scale nucleic acid processor with parallel architecture, Nat. Bio. 22(4),
435–439 (2004)
20.51
W. Hellmich, C. Pelargus, K. Leffhalm, A. Ros,
D. Anselmetti: Single cell manipulation, analytics,
and label-free protein detection in microfluidic
devices for systems nanobiology, Electrophoresis
26(19), 3689–3696 (2005)
20.52
G. Yoshizaki, T. Okutsu, T. Morita, M. Terasawa,
R. Yazawa, Y. Takeuchi: Biological characteristics
of fish germ cells and their application to developmental biotechnology, Reprod. Domest. Anim.
47, 187–192 (2012)
20.53
D. Wlodkowic, K. Khoshmanesh, J. Akagi,
D.E. Williams, J.M. Cooper: Wormometry-on-achip: Innovative technologies for in situ analysis
of small multicellular organisms, Cytometry A
79(10), 799–813 (2011)
20.54
E. Lammer, H.G. Kamp, V. Hisgen, M. Koch,
D. Reinhard, E.R. Salinas, K. Wendler, S. Zok,
T. Braunbeck: Development of a flow-through
system for the fish embryo toxicity test (FET) with
the zebrafish (Danio rerio), Toxicol. in vitro 23(7),
1436–1442 (2009)
20.55
J. Giacomotto, L. Segalat: High-throughput
screening and small animal models, where are
we?, Br. J. Pharmacol. 160(2), 204–216 (2010)
20.56
R. Pulak: Techniques for analysis, sorting, and
dispensing of C. elegans on the COPAS flowsorting system, Methods Mol. Biol. 351, 275–286
(2006)
20.57
M. Westerfield: The Zebrafish Book: A Guide for
the Laboratory Use of Zebrafish (Brachydanio Rerio), 4th edn. (Univ. Oregon, Eugene, Oregon
1993)
20.58
G.N. Wheeler, A.W. Brandli: Simple vertebrate
models for chemical genetics and drug discovery screens: Lessons from zebrafish and Xenopus,
Dev. Dyn. 238(6), 1287–1308 (2009)
20.59
K. Chung, M.M. Crane, H. Lu: Automated on-chip
rapid microscopy, phenotyping and sorting of C.
elegans, Nat. Methods 5(7), 637–643 (2008)
20.60
S.E. Hulme, S.S. Shevkoplyas, A.P. McGuigan,
J. Apfeld, W. Fontana, G.M. Whitesides: Lifespanon-a-chip: Microfluidic chambers for performing
lifelong observation of C. elegans, Lab Chip 10(5),
589–597 (2010)
20.61
K. Khoshmanesh, N. Kiss, S. Nahavandi,
C.W. Evans, J.M. Cooper, D.E. Williams, D. Wlodkowic: Trapping and imaging of micron-sized
embryos using dielectrophoresis, Electrophoresis
32(22), 3129–3132 (2011)
20.62
E.M. Lucchetta, M.S. Munson, R.F. Ismagilov:
Characterization of the local temperature in space
and time around a developing Drosophila embryo
in a microfluidic device, Lab Chip 6(2), 185–190
(2006)
20.63
S.A. Sundberg: High-throughput and ultra-highthroughput screening: Solution- and cell-based
526 Part C Marine Genomics
20.37
T. Thorsen, S.J. Maerkl, S.R. Quake: Microfluidic
large-scale integration, Science 298(5593), 580–
584 (2002)
20.38
E.A. Ottesen, J.W. Hong, S.R. Quake, J.R. Leadbetter: Microfluidic digital PCR enables multigene
analysis of individual environmental bacteria,
Science 314(5804), 1464–1467 (2006)
20.39
P.C. Blainey, A.C. Mosier, A. Potanina, C.A. Francis,
S.R. Quake: Genome of a low-salinity ammoniaoxidizing archaeon determined by single-cell
and metagenomic analysis, PLoS ONE 6(2)(5804),
e16626 (2011)
20.40
K.C. Neuman, S.M. Block: Optical trapping, Rev.
Sci. Instrum. 75(9), 2787–2809 (2004)
20.41
A. Ashkin, J.M. Dziedzic, J.E. Bjorkholm, S. Chu:
Observation of a single-beam gradient force optical trap for dielectric particles, Opt. Lett. 11(5),
288 (1986)
20.42
K. Leung, H. Zahn, T. Leaver, K.M. Konwar,
N.W. Hanson, A.P. Page, C.C. Lo, P.S. Chain,
S.J. Hallam, C.L. Hansen: A programmable
droplet-based microfluidic device applied to
multiparameter analysis of single microbes and
microbial communities, Proc. Natl. Acad. Sci. USA
109(20), 7665–7670 (2012)
20.43
A. Funfak, A. Brösing, M. Brand, J.M. Köhler: Micro
fluid segment technique for screening and development studies on Danio rerio embryos, Lab Chip
7(9), 1132–1138 (2007)
20.44
J. Akagi: Miniaturized embryo array for automated trapping, immobilization and microperfusion of zebrafish embryos, PLoS One 7(5), e36630
(2011)
20.45
B.K. Swan, M. Martinez-Garcia, C.M. Preston,
A. Sczyrba, T. Woyke, D. Lamy, T. Reinthaler,
N.J. Poulton, E.D. Masland, M.L. Gomez, M.E. Sieracki, E.F. DeLong, G.J. Herndl, R. Stepanauskas:
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean, Science 333(6047), 1296–1300 (2011)
20.46
G. Benazzi, D. Holmes, T. Sun, M.C. Mowlem,
H. Morgan: Discrimination and analysis of phytoplankton using a microfluidic cytometer, IET
Nanobiotechnology 1(6), 94–101 (2007)
20.47
S. Sasaki, T. Okamoto, T. Fujii: Bioluminescence
intensity difference observed in luminous bacteria groups with different motility, Lett. Appl.
Microbiol. 48(3), 313–317 (2009)
20.48
H. Yin, D. Marshall: Microfluidics for single cell
analysis, Curr. Opin. Biotechnol. 23(1), 110–119
(2011)
20.49
Y. Taniguchi, P.J. Choi, G.W. Li, H. Chen, M. Babu,
J. Hearn, A. Emili, X.S. Xie: Quantifying E. coli proteome and transcriptome with single-molecule
sensitivity in single cells, Science 329(5991), 533–
538 (2010)
20.50
J.W. Hong, V. Studer, G. Hang, W.F. Anderson,
S.R. Quake: A nanoliter-scale nucleic acid processor with parallel architecture, Nat. Bio. 22(4),
435–439 (2004)
20.51
W. Hellmich, C. Pelargus, K. Leffhalm, A. Ros,
D. Anselmetti: Single cell manipulation, analytics,
and label-free protein detection in microfluidic
devices for systems nanobiology, Electrophoresis
26(19), 3689–3696 (2005)
20.52
G. Yoshizaki, T. Okutsu, T. Morita, M. Terasawa,
R. Yazawa, Y. Takeuchi: Biological characteristics
of fish germ cells and their application to developmental biotechnology, Reprod. Domest. Anim.
47, 187–192 (2012)
20.53
D. Wlodkowic, K. Khoshmanesh, J. Akagi,
D.E. Williams, J.M. Cooper: Wormometry-on-achip: Innovative technologies for in situ analysis
of small multicellular organisms, Cytometry A
79(10), 799–813 (2011)
20.54
E. Lammer, H.G. Kamp, V. Hisgen, M. Koch,
D. Reinhard, E.R. Salinas, K. Wendler, S. Zok,
T. Braunbeck: Development of a flow-through
system for the fish embryo toxicity test (FET) with
the zebrafish (Danio rerio), Toxicol. in vitro 23(7),
1436–1442 (2009)
20.55
J. Giacomotto, L. Segalat: High-throughput
screening and small animal models, where are
we?, Br. J. Pharmacol. 160(2), 204–216 (2010)
20.56
R. Pulak: Techniques for analysis, sorting, and
dispensing of C. elegans on the COPAS flowsorting system, Methods Mol. Biol. 351, 275–286
(2006)
20.57
M. Westerfield: The Zebrafish Book: A Guide for
the Laboratory Use of Zebrafish (Brachydanio Rerio), 4th edn. (Univ. Oregon, Eugene, Oregon
1993)
20.58
G.N. Wheeler, A.W. Brandli: Simple vertebrate
models for chemical genetics and drug discovery screens: Lessons from zebrafish and Xenopus,
Dev. Dyn. 238(6), 1287–1308 (2009)
20.59
K. Chung, M.M. Crane, H. Lu: Automated on-chip
rapid microscopy, phenotyping and sorting of C.
elegans, Nat. Methods 5(7), 637–643 (2008)
20.60
S.E. Hulme, S.S. Shevkoplyas, A.P. McGuigan,
J. Apfeld, W. Fontana, G.M. Whitesides: Lifespanon-a-chip: Microfluidic chambers for performing
lifelong observation of C. elegans, Lab Chip 10(5),
589–597 (2010)
20.61
K. Khoshmanesh, N. Kiss, S. Nahavandi,
C.W. Evans, J.M. Cooper, D.E. Williams, D. Wlodkowic: Trapping and imaging of micron-sized
embryos using dielectrophoresis, Electrophoresis
32(22), 3129–3132 (2011)
20.62
E.M. Lucchetta, M.S. Munson, R.F. Ismagilov:
Characterization of the local temperature in space
and time around a developing Drosophila embryo
in a microfluidic device, Lab Chip 6(2), 185–190
(2006)
20.63
S.A. Sundberg: High-throughput and ultra-highthroughput screening: Solution- and cell-based