Proteomics: Applications and Advances References 491
Part C | 18
References
18.1
Sequencing consortium: Genome sequence of the
nematode C. elegans: A platform for investigating
biology, Science 282(5396), 2012–2018 (1998)
18.2
C. May, F. Brosseron, P. Chartowski, C. Schumbrutzki, B. Schoenebeck, K. Marcus:Data Mining
in Proteomics: From Standards to Applications,
Methods in Molecular Biology, Vol. 696, ed. by
M. Hamacher, M. Eisenacher, C. Stephan (Humana, Totowa 2011) pp. 3–26
18.3
P.M. Rodrigues, T.S. Silva, J. Dias, F. Jessen: PROTEOMICS in aquaculture: Applications and trends,
J. Proteomics 75(14), 4325–4345 (2012)
18.4
M. Slattery, S. Ankisetty, J. Corrales, K.E. MarshHunkin, D.J. Gochfeld, K.L. Willett, J.M. Rimoldi:
Marine proteomics: A critical assessment of an
emerging technology, J. Nat. Prod. 75(10), 1833–
1877 (2012)
18.5
U.K. Laemmli: Cleavage of structural proteins during the assembly of the head of bacteriophage T4,
Nature 227(5259), 680–685 (1970)
18.6
W. Weiss, A. Görg: High-resolution twodimensional electrophoresis. In: Proteomics,
Methods in Molecular Biology, Vol. 564, ed. by
J. Reinders, A. Sickmann (Humana, Totowa 2009)
pp. 13–32
18.7
F. Chevalier: Highlights on the capacities of gelbased proteomics, Proteome Sci. 8(1), 23–33 (2010)
18.8
W. Weiss, F. Weiland, A. Görg: Protein detection and quantitation technologies for gel-based
proteome analysis. In: Proteomics, Methods in
Molecular Biology, Vol. 564, ed. by J. Reinders,
A. Sickmann (Humana, Totowa 2009) pp. 59–82
18.9
E. Kolker, R. Higdon, J.M. Hogan: Protein identification and expression analysis using mass spectrometry, Trends Microbiol. 14(5), 229–235 (2006)
18.10
A. Schmidt, N. Gehlenborg, B. Bodenmiller,
L.N. Mueller, D. Campbell, M. Mueller, R. Aebersold, B. Domon: An integrated, directed mass
spectrometric approach for in-depth characterization of complex peptide mixtures, Mol. Cell.
Proteomics 7(11), 2138–2150 (2008)
18.11
C. Fenselau: A review of quantitative methods for
proteomic studies, J. Chromatogr. B 855(1), 14–20
(2007)
18.12
H. Wang, S. Alvarez, L.M. Hicks: Comprehensive comparison of iTRAQ and label-free LC-based
quantitative proteomics approaches using two
Chlamydomonas reinhardtii strains of interest for
biofuels engineering, J. Proteome Res. 11(1), 487–
501 (2012)
18.13
C. Piñeiro, J. Barros-Velázquez, J. Vázquez,
A. Figueras, J.M. Gallardo: Proteomics as a tool
for the investigation of seafood and other marine
products, J. Proteome Res. 2(2), 127–135 (2003)
18.14
J. Querellou, J. Cadoret, M.J. Allen, J. Collén: Marine biotechnology. In: Advances in Marine Genomics 1, Introduction to Marine Genomics, ed.
by J.M. Cock, K. Tessmar-Raible, C. Boyen, F. Viard
(Springer, Heidelberg, London, New York, 2010)
pp. 287–313
18.15
Food and Agriculture Organization of the United
Nations: The State of World Fisheries and Aquaculture 2010 (FAO, Rome 2010)
18.16
L.E. Fleming, K. Broad, A. Clement, E. Dewailly, S. Elmir, A. Knap, S.A. Pomponi, S. Smith,
H.S. Gabriele, P. Walsh: Oceans and human
health: Emerging public health risks in the marine
environment, Mar. Pollut. Bull. 53(10–12), 545–
560 (2006)
18.17
R. Callaway, A.P. Shinn, S.E. Grenfell, J.E. Bron,
G. Burnell, E.J. Cook, M. Crumlish, S. Culloty, K. Davidson, R.P. Ellis, K.J. Flynn, C. Fox,
D.M. Green, G.C. Hays, A.D. Hughes, E. Johnston,
C.D. Lowe, I. Lupatsch, S. Malham, A.F. Mendzil,
T. Nickell, T. Pickerell, A.F. Rowley, M.S. Stanley,
D.R. Tocher, J.F. Turnbull, G. Webb, E. Wootton,
R.J. Shields: Review of climate change impacts
on marine aquaculture in the UK and Ireland,
Aquat. Conversat.: Mar. Freshw. Ecosyst. 22, 389–
421 (2012)
18.18
C. Piñeiro, B. Cañas, M. Carrera: The role of proteomics in the study of the influence of climate
change on seafood products, Food Res. Int. 43(7),
1791–1802 (2010)
18.19
E. Rimstad: Examples of emerging virus diseases
in salmonid aquaculture, Aquacult. Res. 42, 86–
89 (2011)
18.20
B. Robertsen: Can we get the upper hand on viral diseases in aquaculture of Atlantic salmon?,
Aquacult. Res. 42, 125–131 (2011)
18.21
R.C. Sihag, P. Sharma: Probiotics: The new
ecofriendly alternative measures of disease control for sustainable aquaculture, J. Fish. Aquat.
Sci. 7(2), 72–103 (2012)
18.22
J.W. Pridgeon, P.H. Klesius: Major bacterial diseases in aquaculture and their vaccine development, CAB Reviews 7, 1–16 (2012)
18.23
M.G. Bondad-Reantaso, R.P. Subasinghe,
J.R. Arthur, K. Ogawa, S. Chinabut, R. Adlard,
Z. Tan, M. Shariff: Disease and health management in Asian aquaculture, Vet. Parasitol.
132(3/4), 249–272 (2005)
18.24
L.A. Munro, I.S. Wallace: Analysis of farmed
fish movements between catchments identifies a
simple compartmentalised management strategy
for bacterial kidney disease in Scottish aquaculture, Aquaculture 338–341, 300–303 (2012)
18.25
M. Briggs: Penaeus vannamei. Cultured Aquatic
Species Information Programme. (FAO Fisheries and Aquaculture Department,Rome 2006)
http://www.fao.org/fishery/culturedspecies/
Litopenaeus_vannamei/en
Part C | 18
References
18.1
Sequencing consortium: Genome sequence of the
nematode C. elegans: A platform for investigating
biology, Science 282(5396), 2012–2018 (1998)
18.2
C. May, F. Brosseron, P. Chartowski, C. Schumbrutzki, B. Schoenebeck, K. Marcus:Data Mining
in Proteomics: From Standards to Applications,
Methods in Molecular Biology, Vol. 696, ed. by
M. Hamacher, M. Eisenacher, C. Stephan (Humana, Totowa 2011) pp. 3–26
18.3
P.M. Rodrigues, T.S. Silva, J. Dias, F. Jessen: PROTEOMICS in aquaculture: Applications and trends,
J. Proteomics 75(14), 4325–4345 (2012)
18.4
M. Slattery, S. Ankisetty, J. Corrales, K.E. MarshHunkin, D.J. Gochfeld, K.L. Willett, J.M. Rimoldi:
Marine proteomics: A critical assessment of an
emerging technology, J. Nat. Prod. 75(10), 1833–
1877 (2012)
18.5
U.K. Laemmli: Cleavage of structural proteins during the assembly of the head of bacteriophage T4,
Nature 227(5259), 680–685 (1970)
18.6
W. Weiss, A. Görg: High-resolution twodimensional electrophoresis. In: Proteomics,
Methods in Molecular Biology, Vol. 564, ed. by
J. Reinders, A. Sickmann (Humana, Totowa 2009)
pp. 13–32
18.7
F. Chevalier: Highlights on the capacities of gelbased proteomics, Proteome Sci. 8(1), 23–33 (2010)
18.8
W. Weiss, F. Weiland, A. Görg: Protein detection and quantitation technologies for gel-based
proteome analysis. In: Proteomics, Methods in
Molecular Biology, Vol. 564, ed. by J. Reinders,
A. Sickmann (Humana, Totowa 2009) pp. 59–82
18.9
E. Kolker, R. Higdon, J.M. Hogan: Protein identification and expression analysis using mass spectrometry, Trends Microbiol. 14(5), 229–235 (2006)
18.10
A. Schmidt, N. Gehlenborg, B. Bodenmiller,
L.N. Mueller, D. Campbell, M. Mueller, R. Aebersold, B. Domon: An integrated, directed mass
spectrometric approach for in-depth characterization of complex peptide mixtures, Mol. Cell.
Proteomics 7(11), 2138–2150 (2008)
18.11
C. Fenselau: A review of quantitative methods for
proteomic studies, J. Chromatogr. B 855(1), 14–20
(2007)
18.12
H. Wang, S. Alvarez, L.M. Hicks: Comprehensive comparison of iTRAQ and label-free LC-based
quantitative proteomics approaches using two
Chlamydomonas reinhardtii strains of interest for
biofuels engineering, J. Proteome Res. 11(1), 487–
501 (2012)
18.13
C. Piñeiro, J. Barros-Velázquez, J. Vázquez,
A. Figueras, J.M. Gallardo: Proteomics as a tool
for the investigation of seafood and other marine
products, J. Proteome Res. 2(2), 127–135 (2003)
18.14
J. Querellou, J. Cadoret, M.J. Allen, J. Collén: Marine biotechnology. In: Advances in Marine Genomics 1, Introduction to Marine Genomics, ed.
by J.M. Cock, K. Tessmar-Raible, C. Boyen, F. Viard
(Springer, Heidelberg, London, New York, 2010)
pp. 287–313
18.15
Food and Agriculture Organization of the United
Nations: The State of World Fisheries and Aquaculture 2010 (FAO, Rome 2010)
18.16
L.E. Fleming, K. Broad, A. Clement, E. Dewailly, S. Elmir, A. Knap, S.A. Pomponi, S. Smith,
H.S. Gabriele, P. Walsh: Oceans and human
health: Emerging public health risks in the marine
environment, Mar. Pollut. Bull. 53(10–12), 545–
560 (2006)
18.17
R. Callaway, A.P. Shinn, S.E. Grenfell, J.E. Bron,
G. Burnell, E.J. Cook, M. Crumlish, S. Culloty, K. Davidson, R.P. Ellis, K.J. Flynn, C. Fox,
D.M. Green, G.C. Hays, A.D. Hughes, E. Johnston,
C.D. Lowe, I. Lupatsch, S. Malham, A.F. Mendzil,
T. Nickell, T. Pickerell, A.F. Rowley, M.S. Stanley,
D.R. Tocher, J.F. Turnbull, G. Webb, E. Wootton,
R.J. Shields: Review of climate change impacts
on marine aquaculture in the UK and Ireland,
Aquat. Conversat.: Mar. Freshw. Ecosyst. 22, 389–
421 (2012)
18.18
C. Piñeiro, B. Cañas, M. Carrera: The role of proteomics in the study of the influence of climate
change on seafood products, Food Res. Int. 43(7),
1791–1802 (2010)
18.19
E. Rimstad: Examples of emerging virus diseases
in salmonid aquaculture, Aquacult. Res. 42, 86–
89 (2011)
18.20
B. Robertsen: Can we get the upper hand on viral diseases in aquaculture of Atlantic salmon?,
Aquacult. Res. 42, 125–131 (2011)
18.21
R.C. Sihag, P. Sharma: Probiotics: The new
ecofriendly alternative measures of disease control for sustainable aquaculture, J. Fish. Aquat.
Sci. 7(2), 72–103 (2012)
18.22
J.W. Pridgeon, P.H. Klesius: Major bacterial diseases in aquaculture and their vaccine development, CAB Reviews 7, 1–16 (2012)
18.23
M.G. Bondad-Reantaso, R.P. Subasinghe,
J.R. Arthur, K. Ogawa, S. Chinabut, R. Adlard,
Z. Tan, M. Shariff: Disease and health management in Asian aquaculture, Vet. Parasitol.
132(3/4), 249–272 (2005)
18.24
L.A. Munro, I.S. Wallace: Analysis of farmed
fish movements between catchments identifies a
simple compartmentalised management strategy
for bacterial kidney disease in Scottish aquaculture, Aquaculture 338–341, 300–303 (2012)
18.25
M. Briggs: Penaeus vannamei. Cultured Aquatic
Species Information Programme. (FAO Fisheries and Aquaculture Department,Rome 2006)
http://www.fao.org/fishery/culturedspecies/
Litopenaeus_vannamei/en