Marine Sponge Metagenomics References 473
Part C | 17
bionts from structure–based gene targeting, Nat.
Chem. Biol. 5, 494–501 (2009)
17.71 S. Rachid, D. Krug, B. Kunze, I. Kochems, M. Scharfe,
T.M. Zabriskie, H. Blocker, R. Muller: Molecular
and biochemical studies of chondramide formation
– highly cytotoxic natural products from Chondromyces crocatus Cm c5, Chem. Biol. 13, 667–681
(2006)
17.72 T.K. Kim, J.A. Fuerst: Diversity of polyketide synthase genes from bacteria associated with the
marine sponge Pseudoceratina clavata: Culture dependent and culture independent approaches, Environ. Microbiol. 8, 1460–1470 (2006)
17.73 M. Hildebrand, L.E. Waggoner, H. Liu, S. Sudek,
S. Allen, C. Anderson, D.H. Sherman, M. Haygood:
bryA: an unusual modular polyketide synthase
gene from the uncultivated bacterial symbiont of
the marine bryozoan Bugula neritina, Chem. Biol.
11, 1543–1552 (2004)
17.74 P.F. Long, W.C. Dunlap, C.N. Battershill, M. Jaspars: Shotgun cloning and heterologous expression
of the patellamide gene cluster as a strategy to
achieving sustained metabolite production, ChemBioChem. 6, 1760–1765 (2005)
17.75 E.W. Schmidt, J.T. Nelson, D.A. Rasko, S. Sudek,
J.A. Eisen, M.G. Haygood, J. Ravel: Patellamide A
and C biosynthesis by amicrocin like pathway in
Prochloron didemni, the cyanobacterial symbiont
of Lissoclinum patella, Proc. Natl. Acad. Sci. USA
102, 7315–7320 (2005)
17.76 T. Hochmuth, J. Piel: Polyketide synthases of bacterial symbionts in sponges – evolution based
applications in natural products research, Phytochemistry 70, 1841–1849 (2009)
17.77 K. Nechev, W.W. Christie, R. Robaina, F. de Diego,
S. Popov, K. Stefanov: Lipid composition of the
sponge Verongia aerophoba from the Canary islands, Eur. J. Lipid Sci. Technol. 104, 800–807 (2002)
17.78 V. Thiel, A. Jenisch, G. Wörheide, A. Löwenberg,
J. Reitner, W. Michaelis: Mid-chain branched alcanoic acids from “living fossil” demosponges: A
link to ancient sedimentary lipids?, Org. Geochem.
30, 1–14 (1999)
17.79 D.E. Minnikin, L. Kremer, L.G. Dover, G.S. Besra: The
methyl branched fortifications of mycobacterium
tuberculosis, Chem. Biol. 95, 545–553 (2002)
17.80 D.G. Russell: Phagosomes, fatty acids and tuberculosis, Nat. Cell Biol. 5, 793–802 (2003)
17.81 J. Selvin, J. Kennedy, D.P.H. Lejon, G.S. Kiran,
A.D.W. Dobson: Isolation identification and biochemical characterization of a novel halo tolerant
lipase from the metagenome of the marine sponge
Haliclona simulans, Microb. Cell Factories 11, 72
(2012)
17.82 F. Hoffmann, R. Radax, D. Woebken, M. Holtappels, G. Lavik, H.T. Rapp, M.L. Schlappy, C. Schleper,
M.M. Kuypers: Complex nitrogen cycling in the
sponge Geodia barretti, Environ. Microb. 11, 2228–
2243 (2009)
17.83 M.L. Schlappy, S.I. Schottner, G. Lavik,
M.M.M. Kuypers, D. de Beer, F. Hoffmann: Evidence of nitrification and denitrification in high
and low microbial abundance sponges, Mar. Biol.
157, 593–602 (2010)
17.84 A. Siegl, J. Kamke, T. Hochmuth, J. Piel, M. Richter,
C. Liang, T. Dandekar, U. Hentschel: Single cell
genomics reveals the lifestyle of Poribacteria, a
candidate phylum symbiotically associated with
marine sponges, ISME Journal 5, 61–70 (2011)
17.85 N.M. Mohamed, K. Saito, Y. Tal, R.T. Hill: Diversity of
aerobic and anaerobic ammonia oxidizing bacteria
in marine sponges, ISME Journal 4, 38–48 (2010)
17.86 M. Liu, L. Fan, L. Zhong, S. Kjelleberg, T. Thomas:
2012 Metaproteogenomic analysis of a community
of sponge symbionts, ISME Journal 6, 1515–1525
(2012)
17.87 M. Wehrl, M. Steinert, U. Hentschel: Bacterial uptake by the marine sponge Aplysina aerophoba,
Microb. Ecol. 53, 355–365 (2007)
17.88 T. Thomas, D. Rusch, M.Z. Demaere, P.Y. Yung,
M. Lewis, A. Halpern, K.B. Heidelberg, S. Egan,
P.D. Steinberg, S. Kjelleberg: Functional genomic
signatures of sponge bacteria reveal unique and
shared features of symbiosis, ISME Journal 4, 1557–
1567 (2010)
17.89 A.M. Siegl, U. Hentschel: PKS and NRPS gene clusters
from microbial symbiont cells of marine sponges by
whole genome amplification, Environ. Microbiol.
Rep. 2, 507–513 (2010)
17.90 M. Wu, L.V. Sun, J. Vamathevan, M. Riegler,
R. Deboy, J.C. Brownlie, E.A. McGraw, W. Martin, C. Esser, N. Ahmadinejad, C. Wiegand,
R. Madupu, M.J. Beanan, L.M. Brinkac, S.C. Daugherty, A.S. Durkin, J.F. Kolonay, W.C. Nelson, Y. Mohamoud, P. Lee, K. Berry, M.B. Young, T. Utterback,
J. Weidman, W.C. Nierman, I.T. Paulsen, K.E. Nelson, H. Tettelin, S.L. O’Neill, J.A. Eisen: Phylogenomics of the reproductive parasite Wolbachia
pipientis wMel: a streamlined genome overrun by
mobile genetic elements, PLoS Biology 2, E69 (2004)
17.91 R. Barrangou, C. Fremaux, H. Deveau, M. Richards,
P. Boyaval, S. Moineau, D.A. Romero, P. Horwath:
CRISPR provides acquired resistance against viruses
in prokaryotes, Science 315, 1709–1712 (2007)
Part C | 17
bionts from structure–based gene targeting, Nat.
Chem. Biol. 5, 494–501 (2009)
17.71 S. Rachid, D. Krug, B. Kunze, I. Kochems, M. Scharfe,
T.M. Zabriskie, H. Blocker, R. Muller: Molecular
and biochemical studies of chondramide formation
– highly cytotoxic natural products from Chondromyces crocatus Cm c5, Chem. Biol. 13, 667–681
(2006)
17.72 T.K. Kim, J.A. Fuerst: Diversity of polyketide synthase genes from bacteria associated with the
marine sponge Pseudoceratina clavata: Culture dependent and culture independent approaches, Environ. Microbiol. 8, 1460–1470 (2006)
17.73 M. Hildebrand, L.E. Waggoner, H. Liu, S. Sudek,
S. Allen, C. Anderson, D.H. Sherman, M. Haygood:
bryA: an unusual modular polyketide synthase
gene from the uncultivated bacterial symbiont of
the marine bryozoan Bugula neritina, Chem. Biol.
11, 1543–1552 (2004)
17.74 P.F. Long, W.C. Dunlap, C.N. Battershill, M. Jaspars: Shotgun cloning and heterologous expression
of the patellamide gene cluster as a strategy to
achieving sustained metabolite production, ChemBioChem. 6, 1760–1765 (2005)
17.75 E.W. Schmidt, J.T. Nelson, D.A. Rasko, S. Sudek,
J.A. Eisen, M.G. Haygood, J. Ravel: Patellamide A
and C biosynthesis by amicrocin like pathway in
Prochloron didemni, the cyanobacterial symbiont
of Lissoclinum patella, Proc. Natl. Acad. Sci. USA
102, 7315–7320 (2005)
17.76 T. Hochmuth, J. Piel: Polyketide synthases of bacterial symbionts in sponges – evolution based
applications in natural products research, Phytochemistry 70, 1841–1849 (2009)
17.77 K. Nechev, W.W. Christie, R. Robaina, F. de Diego,
S. Popov, K. Stefanov: Lipid composition of the
sponge Verongia aerophoba from the Canary islands, Eur. J. Lipid Sci. Technol. 104, 800–807 (2002)
17.78 V. Thiel, A. Jenisch, G. Wörheide, A. Löwenberg,
J. Reitner, W. Michaelis: Mid-chain branched alcanoic acids from “living fossil” demosponges: A
link to ancient sedimentary lipids?, Org. Geochem.
30, 1–14 (1999)
17.79 D.E. Minnikin, L. Kremer, L.G. Dover, G.S. Besra: The
methyl branched fortifications of mycobacterium
tuberculosis, Chem. Biol. 95, 545–553 (2002)
17.80 D.G. Russell: Phagosomes, fatty acids and tuberculosis, Nat. Cell Biol. 5, 793–802 (2003)
17.81 J. Selvin, J. Kennedy, D.P.H. Lejon, G.S. Kiran,
A.D.W. Dobson: Isolation identification and biochemical characterization of a novel halo tolerant
lipase from the metagenome of the marine sponge
Haliclona simulans, Microb. Cell Factories 11, 72
(2012)
17.82 F. Hoffmann, R. Radax, D. Woebken, M. Holtappels, G. Lavik, H.T. Rapp, M.L. Schlappy, C. Schleper,
M.M. Kuypers: Complex nitrogen cycling in the
sponge Geodia barretti, Environ. Microb. 11, 2228–
2243 (2009)
17.83 M.L. Schlappy, S.I. Schottner, G. Lavik,
M.M.M. Kuypers, D. de Beer, F. Hoffmann: Evidence of nitrification and denitrification in high
and low microbial abundance sponges, Mar. Biol.
157, 593–602 (2010)
17.84 A. Siegl, J. Kamke, T. Hochmuth, J. Piel, M. Richter,
C. Liang, T. Dandekar, U. Hentschel: Single cell
genomics reveals the lifestyle of Poribacteria, a
candidate phylum symbiotically associated with
marine sponges, ISME Journal 5, 61–70 (2011)
17.85 N.M. Mohamed, K. Saito, Y. Tal, R.T. Hill: Diversity of
aerobic and anaerobic ammonia oxidizing bacteria
in marine sponges, ISME Journal 4, 38–48 (2010)
17.86 M. Liu, L. Fan, L. Zhong, S. Kjelleberg, T. Thomas:
2012 Metaproteogenomic analysis of a community
of sponge symbionts, ISME Journal 6, 1515–1525
(2012)
17.87 M. Wehrl, M. Steinert, U. Hentschel: Bacterial uptake by the marine sponge Aplysina aerophoba,
Microb. Ecol. 53, 355–365 (2007)
17.88 T. Thomas, D. Rusch, M.Z. Demaere, P.Y. Yung,
M. Lewis, A. Halpern, K.B. Heidelberg, S. Egan,
P.D. Steinberg, S. Kjelleberg: Functional genomic
signatures of sponge bacteria reveal unique and
shared features of symbiosis, ISME Journal 4, 1557–
1567 (2010)
17.89 A.M. Siegl, U. Hentschel: PKS and NRPS gene clusters
from microbial symbiont cells of marine sponges by
whole genome amplification, Environ. Microbiol.
Rep. 2, 507–513 (2010)
17.90 M. Wu, L.V. Sun, J. Vamathevan, M. Riegler,
R. Deboy, J.C. Brownlie, E.A. McGraw, W. Martin, C. Esser, N. Ahmadinejad, C. Wiegand,
R. Madupu, M.J. Beanan, L.M. Brinkac, S.C. Daugherty, A.S. Durkin, J.F. Kolonay, W.C. Nelson, Y. Mohamoud, P. Lee, K. Berry, M.B. Young, T. Utterback,
J. Weidman, W.C. Nierman, I.T. Paulsen, K.E. Nelson, H. Tettelin, S.L. O’Neill, J.A. Eisen: Phylogenomics of the reproductive parasite Wolbachia
pipientis wMel: a streamlined genome overrun by
mobile genetic elements, PLoS Biology 2, E69 (2004)
17.91 R. Barrangou, C. Fremaux, H. Deveau, M. Richards,
P. Boyaval, S. Moineau, D.A. Romero, P. Horwath:
CRISPR provides acquired resistance against viruses
in prokaryotes, Science 315, 1709–1712 (2007)