Part B | 16
450 Part B Tools and Methods in Marine Biotechnology
References
16.1
B.S. Galil: Loss or gain? Invasive aliens and biodiversity in the Mediterranean Sea, Mar. Poll. Bull.
55, 314–322 (2007)
16.2
I. Wallentinus, C.D. Nyberg: Introduced marine organisms as habitat modifiers, Mar. Pollut. Bull. 55,
323–332 (2007)
16.3
N. Bax, A. Williamson, M. Aguero, E. Gonzalez,
W. Geeves: Marine invasive alien species: a threat
to global biodiversity, Mar. Pol. 27, 313–323 (2003)
16.4
K.R. Hayes, C. Sliwa: Identifying potential marine
pests – a deductive approach applied to Australia,
Mar. Poll. Bull. 46, 91–98 (2003)
16.5
A.N. Cohen, J.T. Carlton: Accelerating invasion rate
in a highly invaded estuary, Science 279, 555–558
(1998)
16.6
J. Crombie, E. Knight, S. Barry: Marine Pest Incursions – A Tool to Predict the Cost of Eradication Based on Expert Assessments Bureau of Rural
Services (Australian Commonwealth Government,
Canberra, Australia 2007) p. 61
16.7
L.W.J. Anderson: California’s reaction to Caulerpa
taxifolia: a model for invasive species rapid response, Biol. Inv. 7, 1003–1016 (2005)
16.8
N. Bax, K. Hayes, A. Marshall, D. Parry, R. Thresher:
Man-made marinas as sheltered island for alien
marine organisms: Establishment and eradication
of an alien invasive marine species, Proc. Int. Conference on Eradication of Island Invasives, February
2001, ed. by C.R. Veitch, M.N. Clout (IUCN publications, Auckland 2002) pp. 26–39
16.9
B.S. Galil, C. Bogi: Mytilopsis sallei (Mollusca: Bivalvia: Dreissenidae) established on the Mediterranean coast of Israel, Marine Biodivers. Rec. 2(1),
1–4 (2009)
16.10 J.A. Darling, M.J. Blum: DNA-based methods for
monitoring invasive species: a review and prospectus, Biol. Inv. 9, 751–765 (2007)
16.11 N.J. Bott, K.M. Ophel-Keller, M.T. Sierp, Herdina,
K.P. Rowling, A.C. McKay, M.G.K. Loo, J.E. Tanner,
M.R. Deveney: Toward routine, DNA-based detection methods for marine pests, Biotech. Adv. 28,
706–714 (2010)
16.12 J.A. Darling, A.R. Mahon: From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments, Env. Res. 111, 978–988 (2011)
16.13 M.L. Campbell, B. Gould, C.L. Hewitt: Survey evaluations to assess marine bioinvasions, Mar. Poll.
Bull. 55, 360–378 (2007)
16.14 G.W. Hopkins, R.P. Freckleton: Declines in numbers
of amateur and professional taxonomists: implications for conservation, Anim. Conserv. 5, 245–249
(2002)
16.15 K.C. Kim, L.B. Byrne: Biodiversity loss and the taxonomic bottleneck: emerging biodiversity science,
Ecol. Res. 21, 794–810 (2006)
16.16 J.A. Mackie, J. Geller: Experimental parameters affecting quantitative PCR of Artemia franciscana, a
model for a marine zooplanktonic target in natural plankton samples, Limn. Ocean: Meth 8, 337–347
(2010)
16.17 I.G. Wilson: Inhibition and facilitation of nucleic
acid amplification, App. Env. Micro. 63, 3741–3751
(1997)
16.18 D.N. Miller, J.E. Bryant, E.L. Madsen, W.C. Ghiorse:
Evaluation and optimization of DNA extraction and
purification procedures for soil and sediment samples, Appl. Env. Micro. 65, 4715–4724 (1999)
16.19 A. Penna, M. Magnani: Identification of Alexandrium (Dinophyceae) species using PCR and rDNAtargetted probes, J. Phycol. 35, 615–621 (1999)
16.20 T.G. Park, M.F. de Salas, C.J.S. Bolch, G.M. Hallegraff: Development of a Real-time PCR probe
for quantification of the heterotrophic dinoflagellate Cryptoperidinopsis brodyi (Dinophyceae), Appl.
Env. Micro. 73, 2552–2560 (2007)
16.21 A. Godhe, S.K. Otta, A.-S. Rehnstam-Holm,
I. Karunasagar, I. Karunasagar: Polymerase chain
reaction in detection of Gymnodinium mikimotoi
and Alexandrium minutum in field samples from
southwest India, Mar. Biotech. 3, 152–162 (2001)
16.22 C.A. Scholin, D.M. Anderson: Identification of
group-specific and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae), RFLP analysis of SSU ribosomal-RNA
genes, J. Phycol. 30, 744–754 (1994)
16.23 C.J.S. Bolch: PCR protocols for genetic identification of dinoflagellates directly from single cysts and
plankton cells, Phycologia 40, 162–167 (2001)
16.24 J.G. Patil, R.M. Gunasekera, B.E. Deagle, N.J. Bax,
S.I. Blackburn: Development and evaluation of a
PCR based assay for detection of the toxic dinoflagellate, Gymnodinium catenatum (Graham)
in ballast water and environmental samples, Biol.
Inv. 7, 983–994 (2005aa)
16.25 N. Touzet, R. Raine: Discrimination of Alexandrium
andersoni and A. minutum (Dinophyceae) using
LSU rDNA-targeted oligonucleotide probes and fluorescent whole-cell hybridization, Phycologia 46,
168–177 (2007)
16.26 Y. Takahashi, K. Takishita, K. Koike, T. Maruyama,
T. Nakayama, A. Kobiyama, T. Ogata: Development
of molecular probes for Dinophysis (Dinophyceae)
plastid: a tool to predict blooming and explore
plastid origin, Mar. Biotech. 7, 95–103 (2005)
16.27 A. Godhe, C. Cusack, J. Pedersen, P. Anderson,
D.M. Anderson, E. Bresnan, A. Cembella, E. Dahl,
S. Diercks, M. Elbrächter, L. Edler, L. Galluzzi,
C. Gescher, M. Gladstone, B. Karlson, D. Kulis,
M. LeGresley, O. Lindahl, R. Marin, G. McDermott,
L.K. Medlin, L.-K. Naustvoll, A. Penna, K. Töbe: Intercalibration of classical and molecular techniques
450 Part B Tools and Methods in Marine Biotechnology
References
16.1
B.S. Galil: Loss or gain? Invasive aliens and biodiversity in the Mediterranean Sea, Mar. Poll. Bull.
55, 314–322 (2007)
16.2
I. Wallentinus, C.D. Nyberg: Introduced marine organisms as habitat modifiers, Mar. Pollut. Bull. 55,
323–332 (2007)
16.3
N. Bax, A. Williamson, M. Aguero, E. Gonzalez,
W. Geeves: Marine invasive alien species: a threat
to global biodiversity, Mar. Pol. 27, 313–323 (2003)
16.4
K.R. Hayes, C. Sliwa: Identifying potential marine
pests – a deductive approach applied to Australia,
Mar. Poll. Bull. 46, 91–98 (2003)
16.5
A.N. Cohen, J.T. Carlton: Accelerating invasion rate
in a highly invaded estuary, Science 279, 555–558
(1998)
16.6
J. Crombie, E. Knight, S. Barry: Marine Pest Incursions – A Tool to Predict the Cost of Eradication Based on Expert Assessments Bureau of Rural
Services (Australian Commonwealth Government,
Canberra, Australia 2007) p. 61
16.7
L.W.J. Anderson: California’s reaction to Caulerpa
taxifolia: a model for invasive species rapid response, Biol. Inv. 7, 1003–1016 (2005)
16.8
N. Bax, K. Hayes, A. Marshall, D. Parry, R. Thresher:
Man-made marinas as sheltered island for alien
marine organisms: Establishment and eradication
of an alien invasive marine species, Proc. Int. Conference on Eradication of Island Invasives, February
2001, ed. by C.R. Veitch, M.N. Clout (IUCN publications, Auckland 2002) pp. 26–39
16.9
B.S. Galil, C. Bogi: Mytilopsis sallei (Mollusca: Bivalvia: Dreissenidae) established on the Mediterranean coast of Israel, Marine Biodivers. Rec. 2(1),
1–4 (2009)
16.10 J.A. Darling, M.J. Blum: DNA-based methods for
monitoring invasive species: a review and prospectus, Biol. Inv. 9, 751–765 (2007)
16.11 N.J. Bott, K.M. Ophel-Keller, M.T. Sierp, Herdina,
K.P. Rowling, A.C. McKay, M.G.K. Loo, J.E. Tanner,
M.R. Deveney: Toward routine, DNA-based detection methods for marine pests, Biotech. Adv. 28,
706–714 (2010)
16.12 J.A. Darling, A.R. Mahon: From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments, Env. Res. 111, 978–988 (2011)
16.13 M.L. Campbell, B. Gould, C.L. Hewitt: Survey evaluations to assess marine bioinvasions, Mar. Poll.
Bull. 55, 360–378 (2007)
16.14 G.W. Hopkins, R.P. Freckleton: Declines in numbers
of amateur and professional taxonomists: implications for conservation, Anim. Conserv. 5, 245–249
(2002)
16.15 K.C. Kim, L.B. Byrne: Biodiversity loss and the taxonomic bottleneck: emerging biodiversity science,
Ecol. Res. 21, 794–810 (2006)
16.16 J.A. Mackie, J. Geller: Experimental parameters affecting quantitative PCR of Artemia franciscana, a
model for a marine zooplanktonic target in natural plankton samples, Limn. Ocean: Meth 8, 337–347
(2010)
16.17 I.G. Wilson: Inhibition and facilitation of nucleic
acid amplification, App. Env. Micro. 63, 3741–3751
(1997)
16.18 D.N. Miller, J.E. Bryant, E.L. Madsen, W.C. Ghiorse:
Evaluation and optimization of DNA extraction and
purification procedures for soil and sediment samples, Appl. Env. Micro. 65, 4715–4724 (1999)
16.19 A. Penna, M. Magnani: Identification of Alexandrium (Dinophyceae) species using PCR and rDNAtargetted probes, J. Phycol. 35, 615–621 (1999)
16.20 T.G. Park, M.F. de Salas, C.J.S. Bolch, G.M. Hallegraff: Development of a Real-time PCR probe
for quantification of the heterotrophic dinoflagellate Cryptoperidinopsis brodyi (Dinophyceae), Appl.
Env. Micro. 73, 2552–2560 (2007)
16.21 A. Godhe, S.K. Otta, A.-S. Rehnstam-Holm,
I. Karunasagar, I. Karunasagar: Polymerase chain
reaction in detection of Gymnodinium mikimotoi
and Alexandrium minutum in field samples from
southwest India, Mar. Biotech. 3, 152–162 (2001)
16.22 C.A. Scholin, D.M. Anderson: Identification of
group-specific and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae), RFLP analysis of SSU ribosomal-RNA
genes, J. Phycol. 30, 744–754 (1994)
16.23 C.J.S. Bolch: PCR protocols for genetic identification of dinoflagellates directly from single cysts and
plankton cells, Phycologia 40, 162–167 (2001)
16.24 J.G. Patil, R.M. Gunasekera, B.E. Deagle, N.J. Bax,
S.I. Blackburn: Development and evaluation of a
PCR based assay for detection of the toxic dinoflagellate, Gymnodinium catenatum (Graham)
in ballast water and environmental samples, Biol.
Inv. 7, 983–994 (2005aa)
16.25 N. Touzet, R. Raine: Discrimination of Alexandrium
andersoni and A. minutum (Dinophyceae) using
LSU rDNA-targeted oligonucleotide probes and fluorescent whole-cell hybridization, Phycologia 46,
168–177 (2007)
16.26 Y. Takahashi, K. Takishita, K. Koike, T. Maruyama,
T. Nakayama, A. Kobiyama, T. Ogata: Development
of molecular probes for Dinophysis (Dinophyceae)
plastid: a tool to predict blooming and explore
plastid origin, Mar. Biotech. 7, 95–103 (2005)
16.27 A. Godhe, C. Cusack, J. Pedersen, P. Anderson,
D.M. Anderson, E. Bresnan, A. Cembella, E. Dahl,
S. Diercks, M. Elbrächter, L. Edler, L. Galluzzi,
C. Gescher, M. Gladstone, B. Karlson, D. Kulis,
M. LeGresley, O. Lindahl, R. Marin, G. McDermott,
L.K. Medlin, L.-K. Naustvoll, A. Penna, K. Töbe: Intercalibration of classical and molecular techniques