Part B | 13
408 Part B Tools and Methods in Marine Biotechnology
gene knockdown in zebrafish, J. Biomed.
Biotechnol. 2012, 350352 (2012)
13.46
J.K. Lu, J.C. Burns, T.T. Chen: Retrovirus-mediated
transfer and expression of transgenes in medaka,
Proc. Third Int. Mar. Biotechnol. Conf. at Tromoso,
Norway (1994), pp. 72
13.47
Z. Dong, J. Peng, S. Guo: Stable gene silicing
zebrafish with spatiotemporally targetable RNA
interference, Genetics 193, 1065–1071 (2013)
13.48
J.C. Miller, M.C. Holmes, J. Wang, D.Y. Guschin,
Y.L. Lee, I. Rupniewski, C.M. Beausejour,
A.J. Waite, N.S. Wang, K.A. Kim, P.D. Gregory: An
improved zinc-finger nuclease architecture for
highly specific genome editing, Nat. Biotechnol.
25, 778–785 (2007)
13.49
T. Cathomen, J.K. Joung: Zinc-finger nucleases:
the next generation emerges, Molec. Ther. 16,
1200–1207 (2008)
13.50
D. Carroll: Genome engineering with zinc-finger
nucleases, Genetics 188, 773–782 (2011)
13.51
D. Yang, H. Yang, W. Li, B. Zhao, Z. Ouyang, Z. Liu,
Y. Zhao, N. Fan, J. Song, J. Tian, F. Li, J. Zhang,
L. Chang, D. Pei, Y.E. Chen, L. Lai: Generation of
PPAR mono-allelic knockout pigs via zinc-finger
nucleases and nuclear transfer cloning, Cell Res.
21, 979–982 (2011)
13.52
J. Hauschild, B. Peterson, Y. Santago, A.L. Queisser, J.W. Cost, H. Neimann: Efficient generation of biallelic knockout in pigs using zincfinger nucleases, Proc. Natl. Acad. Sci. USA 108,
12013–12017 (2011)
13.53
J.C. Miller, S. Tan, G.H. Qiao, K.A. Barlow, H. Wang,
D.F. Xia, X. Meng, D.E. Paschon, E. Leung,
S.J. Hinkley, G.P. Dulay, K.I. Hua, I. Ankoudinova,
G.J. Cost, F.D. Urnov, H.S. Zhang, M.C. Holmes,
L. Zhangh, P.D. Gregory, E.J. Rebar: A tale nuclease architecture for efficient genome editing, Nat.
Biotechnol. 29, 143–148 (2011)
13.54
J.C. Miller, M.C. Holmes, J. Wang, D.Y. Guschin, Y.L. Lee, I. Rupniewski, C.M. Beausejour, A.J. Waite,
N.S. Wang, K.A. Kim, P.D. Gregory, C.O. Pabo,
E. Rebar: An improved zinc-finger nuclease architecture for highly specific genome editing, Nat.
Biotechnol. 25, 778–785 (2007)
13.55
Y. Doyon, J.M. McCammon, J.C. Miller, F. Faraji,
C. Ngo, G.E. Katibah, R. Amora, T.D. Hocking,
L. Zhang, E.J. Rebar, P.D. Gregory, E.D. Urnov,
S.L. Amacher: Heritable targeted gene disruption in zebrafish using designed zinc-finger
nucleases, Nat. Biotechnol. 26, 702–708
(2008)
13.56
X. Meng, M.B. Noyes, L.J. Zhu, N.D. Lawson,
S.A. Wolfe: Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases,
Nat. Biotechnol. 26, 695–701 (2008)
13.57
Z. Dong, J. Ge, K. Li, Z. Xu, D. Liang, J. Li, J. Li,
W. Jia, Y. Li, X. Dong, S. Cao, X. Wang, J.Q. Pam
Zhao: Heritable target inactivation of myostatingene in yellow catfish (Peiteobagrus filvidraco)
using engineered zinc finger nucleases, PLoS ONE
6, 1–7 (2011)
13.58
D. F. Carlson, S. C. Fahrekrug, P. Hackett: Targeting
DNA with fingers and TALENs, Mol. Ther. Nucleic
Acids 1, e3 (2012)
13.59
K.J. Clark, D.F. Voytas, S.C. Ekker: A TALE of two nucleases: gene targeting for the masses?, Zebrafish
8, 147–149 (2011)
13.60
J.D. Sander, L. Cade, C. Khayter, D. Reyon, R.T. Peterson, J.K. Joung, J.-R.J. Yeh: Targeted gene
disruption in somatic zebrafish cells using engineered TALENs, Nat. Biotechnol. 29(8), 697–698
(2012)
13.61
T. Cermak, E. L. Doyle, M. Christien, L. Wang,
Y. Zhang, C. Schmidt, J. A. Baller, N. V. Somia,
A. J. Bogdanove, D. F. Voytas: Efficient design
and assembly of custom TAKLEN and other TAL
effector-based constructs for DNA targeting, Nucleic Acid Res. 39, e82 (2011)
13.62
R. Barrangou: RNA-mediated programmable
DNA cleavage, Nat. Biotechnol. 9, 836–838
(2012)
13.63
C.R. Hale, S. Majumdar, J. Elmore, N. Compton,
S. Olson, A.M. Resch, C.V.G. Glver, B.R. Gaveley,
R.M. Tems, M.P. Tems: Essential features and rational design of CRISPR RNAs that function with
the Cas RAMP module complex to cleave RNAs,
Molec. Cell 45, 292–302 (2012)
13.64
W.Y. Hwang, Y. Fu, D. Reyon, M.L. Maeder,
S.Q. Tsai, J.D. Sander, R.T. Peterson, J.-R.J. Yeh,
K. Joung: Efficient genome editing in zebrafish
using a CRISPR-Cas system, Nat. Biotechnol. 31,
227–229 (2013)
13.65
N.A. Bluin, J.A. Brodie, A.C. Grossman, P. Xu,
S.H. Brawlay: Porphyra: a marine crop shaped by
stress, Trends Plant Sci. 16, 29–37 (2010)
13.66
R.D. Palmiter, R.L. Brinster: Germ-line transformation in mice, Annu. Rev. Geneti. 20, 465–499
(1986)
13.67
E. Neumann, M. Schaefer-Ridder, Y. Wang,
P.H. Hofschneider: Gene transfer into mouse lyoma cells by electroporation in high electric
fields, EMBO J. 1, 841–845 (1982)
13.68
H. Potter, L. Weir, P. Leder: Enhancer-dependent
expression of human k immunoglobulin genes
introduced into mouse pre-B lymphocytes by
electroporation, Proc. Natl. Acad. Sci. USA 81,
7161–7165 (1984)
13.69
K. Shigekawa, W.J. Dower: Electroporation of eukaryotes and prokaryotes: a general approach
to introduction of macromolecules into cells,
Biotechniques 6, 742–751 (1988)
13.70
D.A. Powers, L. Hereford, T. Cole, K. Creech,
T.T. Chen, C.M. Lin, K. Kight, R.A. Dunham: Electroporation: A method for transferring genes into
gametes of zebrafish (Brachydanio rerio), channel catfish (Ictalurus punctatus), and common
carp (Cyrinus carpio), Mol. Mar. Biol. Biotechnol.
1, 301–308 (1992)
408 Part B Tools and Methods in Marine Biotechnology
gene knockdown in zebrafish, J. Biomed.
Biotechnol. 2012, 350352 (2012)
13.46
J.K. Lu, J.C. Burns, T.T. Chen: Retrovirus-mediated
transfer and expression of transgenes in medaka,
Proc. Third Int. Mar. Biotechnol. Conf. at Tromoso,
Norway (1994), pp. 72
13.47
Z. Dong, J. Peng, S. Guo: Stable gene silicing
zebrafish with spatiotemporally targetable RNA
interference, Genetics 193, 1065–1071 (2013)
13.48
J.C. Miller, M.C. Holmes, J. Wang, D.Y. Guschin,
Y.L. Lee, I. Rupniewski, C.M. Beausejour,
A.J. Waite, N.S. Wang, K.A. Kim, P.D. Gregory: An
improved zinc-finger nuclease architecture for
highly specific genome editing, Nat. Biotechnol.
25, 778–785 (2007)
13.49
T. Cathomen, J.K. Joung: Zinc-finger nucleases:
the next generation emerges, Molec. Ther. 16,
1200–1207 (2008)
13.50
D. Carroll: Genome engineering with zinc-finger
nucleases, Genetics 188, 773–782 (2011)
13.51
D. Yang, H. Yang, W. Li, B. Zhao, Z. Ouyang, Z. Liu,
Y. Zhao, N. Fan, J. Song, J. Tian, F. Li, J. Zhang,
L. Chang, D. Pei, Y.E. Chen, L. Lai: Generation of
PPAR mono-allelic knockout pigs via zinc-finger
nucleases and nuclear transfer cloning, Cell Res.
21, 979–982 (2011)
13.52
J. Hauschild, B. Peterson, Y. Santago, A.L. Queisser, J.W. Cost, H. Neimann: Efficient generation of biallelic knockout in pigs using zincfinger nucleases, Proc. Natl. Acad. Sci. USA 108,
12013–12017 (2011)
13.53
J.C. Miller, S. Tan, G.H. Qiao, K.A. Barlow, H. Wang,
D.F. Xia, X. Meng, D.E. Paschon, E. Leung,
S.J. Hinkley, G.P. Dulay, K.I. Hua, I. Ankoudinova,
G.J. Cost, F.D. Urnov, H.S. Zhang, M.C. Holmes,
L. Zhangh, P.D. Gregory, E.J. Rebar: A tale nuclease architecture for efficient genome editing, Nat.
Biotechnol. 29, 143–148 (2011)
13.54
J.C. Miller, M.C. Holmes, J. Wang, D.Y. Guschin, Y.L. Lee, I. Rupniewski, C.M. Beausejour, A.J. Waite,
N.S. Wang, K.A. Kim, P.D. Gregory, C.O. Pabo,
E. Rebar: An improved zinc-finger nuclease architecture for highly specific genome editing, Nat.
Biotechnol. 25, 778–785 (2007)
13.55
Y. Doyon, J.M. McCammon, J.C. Miller, F. Faraji,
C. Ngo, G.E. Katibah, R. Amora, T.D. Hocking,
L. Zhang, E.J. Rebar, P.D. Gregory, E.D. Urnov,
S.L. Amacher: Heritable targeted gene disruption in zebrafish using designed zinc-finger
nucleases, Nat. Biotechnol. 26, 702–708
(2008)
13.56
X. Meng, M.B. Noyes, L.J. Zhu, N.D. Lawson,
S.A. Wolfe: Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases,
Nat. Biotechnol. 26, 695–701 (2008)
13.57
Z. Dong, J. Ge, K. Li, Z. Xu, D. Liang, J. Li, J. Li,
W. Jia, Y. Li, X. Dong, S. Cao, X. Wang, J.Q. Pam
Zhao: Heritable target inactivation of myostatingene in yellow catfish (Peiteobagrus filvidraco)
using engineered zinc finger nucleases, PLoS ONE
6, 1–7 (2011)
13.58
D. F. Carlson, S. C. Fahrekrug, P. Hackett: Targeting
DNA with fingers and TALENs, Mol. Ther. Nucleic
Acids 1, e3 (2012)
13.59
K.J. Clark, D.F. Voytas, S.C. Ekker: A TALE of two nucleases: gene targeting for the masses?, Zebrafish
8, 147–149 (2011)
13.60
J.D. Sander, L. Cade, C. Khayter, D. Reyon, R.T. Peterson, J.K. Joung, J.-R.J. Yeh: Targeted gene
disruption in somatic zebrafish cells using engineered TALENs, Nat. Biotechnol. 29(8), 697–698
(2012)
13.61
T. Cermak, E. L. Doyle, M. Christien, L. Wang,
Y. Zhang, C. Schmidt, J. A. Baller, N. V. Somia,
A. J. Bogdanove, D. F. Voytas: Efficient design
and assembly of custom TAKLEN and other TAL
effector-based constructs for DNA targeting, Nucleic Acid Res. 39, e82 (2011)
13.62
R. Barrangou: RNA-mediated programmable
DNA cleavage, Nat. Biotechnol. 9, 836–838
(2012)
13.63
C.R. Hale, S. Majumdar, J. Elmore, N. Compton,
S. Olson, A.M. Resch, C.V.G. Glver, B.R. Gaveley,
R.M. Tems, M.P. Tems: Essential features and rational design of CRISPR RNAs that function with
the Cas RAMP module complex to cleave RNAs,
Molec. Cell 45, 292–302 (2012)
13.64
W.Y. Hwang, Y. Fu, D. Reyon, M.L. Maeder,
S.Q. Tsai, J.D. Sander, R.T. Peterson, J.-R.J. Yeh,
K. Joung: Efficient genome editing in zebrafish
using a CRISPR-Cas system, Nat. Biotechnol. 31,
227–229 (2013)
13.65
N.A. Bluin, J.A. Brodie, A.C. Grossman, P. Xu,
S.H. Brawlay: Porphyra: a marine crop shaped by
stress, Trends Plant Sci. 16, 29–37 (2010)
13.66
R.D. Palmiter, R.L. Brinster: Germ-line transformation in mice, Annu. Rev. Geneti. 20, 465–499
(1986)
13.67
E. Neumann, M. Schaefer-Ridder, Y. Wang,
P.H. Hofschneider: Gene transfer into mouse lyoma cells by electroporation in high electric
fields, EMBO J. 1, 841–845 (1982)
13.68
H. Potter, L. Weir, P. Leder: Enhancer-dependent
expression of human k immunoglobulin genes
introduced into mouse pre-B lymphocytes by
electroporation, Proc. Natl. Acad. Sci. USA 81,
7161–7165 (1984)
13.69
K. Shigekawa, W.J. Dower: Electroporation of eukaryotes and prokaryotes: a general approach
to introduction of macromolecules into cells,
Biotechniques 6, 742–751 (1988)
13.70
D.A. Powers, L. Hereford, T. Cole, K. Creech,
T.T. Chen, C.M. Lin, K. Kight, R.A. Dunham: Electroporation: A method for transferring genes into
gametes of zebrafish (Brachydanio rerio), channel catfish (Ictalurus punctatus), and common
carp (Cyrinus carpio), Mol. Mar. Biol. Biotechnol.
1, 301–308 (1992)