Part B | 11
320 Part B Tools and Methods in Marine Biotechnology
11.3
J. Querellou, T. Børresen, C. Boyen, A. Dobson,
M. Höfle, A. Ianora, M. Jaspars, A. Kijjoa, J. Olafsen, G. Rigos, R. Wijffels, C. Compère, M. Magot,
J.L. Olsen, P. Potin, F. Volckaert: Marine Biotechnology: A New Vision and Strategy for Europe
(European Science Foundation, Beernem 2010)
11.4
H.M. Dionisi, M. Lozada, N.L. Olivera: Bioprospection of marine microorganisms: Biotechnological
applications and methods, Rev. Argent. Microbiol.
44, 49–60 (2012)
11.5
C.A. Lozupone, R. Knight: Global patterns in bacterial diversity, Proc. Natl. Acad. Sci. USA 104,
11436–11440 (2007)
11.6
S.B. Zotchev: Marine actinomycetes as an emerging resource for the drug development pipelines,
J. Biotechnol. 158, 168–175 (2012)
11.7
C. Munn: Marine Microbiology: Ecology and Applications (BIOS Scientific, London 2004)
11.8
M. Ferrer, O. Golyshina, A. Beloqui, P.N. Golyshin:
Mining enzymes from extreme environments,
Current Opin. Microbiol. 10, 207–214 (2007)
11.9
R.K. Pettit: Culturability and secondary metabolite diversity of extreme microbes: Expanding
contribution of deep sea and deep-sea vent microbes to natural product discovery, Mar. Biotechnol. 13, 1–11 (2011)
11.10
C.C. Thornburg, T.M. Zabriskie, K.L. McPhail:
Deep-sea hydrothermal vents: potential hot spots
for natural products discovery?, J. Nat. Prod. 73,
489–499 (2010)
11.11
A. Trincone: Marine biocatalysts: Enzymatic features and applications, Mar. Drugs 9, 478–499
(2011)
11.12
S. Egan, T. Thomas, S. Kjelleberg: Unlocking the
diversity and biotechnological potential of marine surface associated microbial communities,
Current Opin. Microbiol. 11, 219–225 (2008)
11.13
A. Penesyan, S. Kjelleberg, S. Egan: Development
of novel drugs from marine surface associated
microorganisms, Mar. Drugs 8, 438–459 (2010)
11.14
E.W. Schmidt: From chemical structure to environmental biosynthetic pathways: Navigating marine invertebrate-bacteria associations,
Trends Biotechnol. 23, 437–440 (2005)
11.15
R.H. Wijffels: Potential of sponges and microalgae
for marine biotechnology, Trends Biotechnol. 26,
26–31 (2008)
11.16
J.F. Imhoff, A. Labes, J. Wiese: Bio-mining the
microbial treasures of the ocean: New natural products, Biotechnol. Adv. 29, 468–482
(2011)
11.17
B.A. McKew, J.D. Taylor, T.J. McGenity, G.J.C. Underwood: Resistance and resilience of benthic
biofilm communities from a temperate saltmarsh
to desiccation and rewetting, ISME Journal 5, 30–
41 (2011)
11.18
B.O. Ortega-Morales, M.J. Chan-Bacab, S.D.C. De
la Rosa-García, J.C. Camacho-Chab: Valuable processes and products from marine intertidal microbial communities, Current Opin. Biotechnol.
21, 346–352 (2010)
11.19
R. de Nys, P.D. Steinberg: Linking marine biology
and biotechnology, Current Opin. Biotechnol. 13,
244–248 (2002)
11.20
K.S. Lam: Discovery of novel metabolites from
marine actinomycetes, Current Opin. Microbiol. 9,
245–251 (2006)
11.21
P.R. Jensen, E. Gontang, C. Mafnas, T.J. Mincer, W. Fenical: Culturable marine actinomycete
diversity from tropical Pacific Ocean sediments,
Environ. Microbiol. 7, 1039–1048 (2005)
11.22
L. Maldonado, J. Stach, W. Pathom-aree, A. Ward,
A. Bull, M. Goodfellow: Diversity of cultivable
actinobacteria in geographically widespread marine sediments, Antonie van Leeuwenhoek 87,
11–18 (2005)
11.23
M. Goodfellow, H.-P. Fiedler: A guide to successful
bioprospecting: informed by actinobacterial systematics, Antonie van Leeuwenhoek 98, 119–142
(2010)
11.24
S.R. Vartoukian, R.M. Palmer, W.G. Wade: Strategies for culture of ‘unculturable’ bacteria, FEMS
Microbiol. Lett. 309, 1–7 (2010)
11.25
B.K. Singh: Exploring microbial diversity for
biotechnology: The way forward, Trends Biotechnol. 28, 111–116 (2010)
11.26
K.B. Heidelberg, J.A. Gilbert, I. Joint: Mar. Genomics: at the interface of marine microbial
ecology and biodiscovery, Microb. Biotechnol. 3,
531–543 (2010)
11.27
M.L. Metzker: Sequencing technologies – the next
generation, Nat. Rev. Genet. 11, 31–46 (2010)
11.28
I. Joint, M. Mühling, J. Querellou: Culturing marine bacteria – an essential prerequisite for
biodiscovery, Microb. Biotechnol. 3, 564–575
(2010)
11.29
O. Prakash, Y. Shouche, K. Jangid, J.E. Kostka:
Microbial cultivation and the role of microbial resource centers in the omics era, Appl. Microbiol.
Biotechnol. 97, 51–62 (2013)
11.30
K. Lewis, S. Epstein, A. D’Onofrio, L.L. Ling: Uncultured microorganisms as a source of secondary
metabolites, J. Antibiot. 63, 468–476 (2010)
11.31
H.S. Lee, K.K. Kwon, S.G. Kang, S.-S. Cha, S.J. Kim, J.-H. Lee: Approaches for novel enzyme discovery from marine environments, Current Opin. Biotechnol. 21, 353–357 (2010)
11.32
T. Kaeberlein, K. Lewis, S.S. Epstein: Isolating
“uncultivable” microorganisms in pure culture in
a simulated natural environment, Science 296,
1127–1129 (2002)
11.33
A. Bollmann, K. Lewis, S.S. Epstein: Incubation of environmental samples in a diffusion
chamber increases the diversity of recovered isolates, Appl. Environ. Microbiol. 73, 6386–6390
(2007)
11.34
E. Gavrish, A. Bollmann, S. Epstein, K. Lewis:
A trap for in situ cultivation of filamentous acti-
320 Part B Tools and Methods in Marine Biotechnology
11.3
J. Querellou, T. Børresen, C. Boyen, A. Dobson,
M. Höfle, A. Ianora, M. Jaspars, A. Kijjoa, J. Olafsen, G. Rigos, R. Wijffels, C. Compère, M. Magot,
J.L. Olsen, P. Potin, F. Volckaert: Marine Biotechnology: A New Vision and Strategy for Europe
(European Science Foundation, Beernem 2010)
11.4
H.M. Dionisi, M. Lozada, N.L. Olivera: Bioprospection of marine microorganisms: Biotechnological
applications and methods, Rev. Argent. Microbiol.
44, 49–60 (2012)
11.5
C.A. Lozupone, R. Knight: Global patterns in bacterial diversity, Proc. Natl. Acad. Sci. USA 104,
11436–11440 (2007)
11.6
S.B. Zotchev: Marine actinomycetes as an emerging resource for the drug development pipelines,
J. Biotechnol. 158, 168–175 (2012)
11.7
C. Munn: Marine Microbiology: Ecology and Applications (BIOS Scientific, London 2004)
11.8
M. Ferrer, O. Golyshina, A. Beloqui, P.N. Golyshin:
Mining enzymes from extreme environments,
Current Opin. Microbiol. 10, 207–214 (2007)
11.9
R.K. Pettit: Culturability and secondary metabolite diversity of extreme microbes: Expanding
contribution of deep sea and deep-sea vent microbes to natural product discovery, Mar. Biotechnol. 13, 1–11 (2011)
11.10
C.C. Thornburg, T.M. Zabriskie, K.L. McPhail:
Deep-sea hydrothermal vents: potential hot spots
for natural products discovery?, J. Nat. Prod. 73,
489–499 (2010)
11.11
A. Trincone: Marine biocatalysts: Enzymatic features and applications, Mar. Drugs 9, 478–499
(2011)
11.12
S. Egan, T. Thomas, S. Kjelleberg: Unlocking the
diversity and biotechnological potential of marine surface associated microbial communities,
Current Opin. Microbiol. 11, 219–225 (2008)
11.13
A. Penesyan, S. Kjelleberg, S. Egan: Development
of novel drugs from marine surface associated
microorganisms, Mar. Drugs 8, 438–459 (2010)
11.14
E.W. Schmidt: From chemical structure to environmental biosynthetic pathways: Navigating marine invertebrate-bacteria associations,
Trends Biotechnol. 23, 437–440 (2005)
11.15
R.H. Wijffels: Potential of sponges and microalgae
for marine biotechnology, Trends Biotechnol. 26,
26–31 (2008)
11.16
J.F. Imhoff, A. Labes, J. Wiese: Bio-mining the
microbial treasures of the ocean: New natural products, Biotechnol. Adv. 29, 468–482
(2011)
11.17
B.A. McKew, J.D. Taylor, T.J. McGenity, G.J.C. Underwood: Resistance and resilience of benthic
biofilm communities from a temperate saltmarsh
to desiccation and rewetting, ISME Journal 5, 30–
41 (2011)
11.18
B.O. Ortega-Morales, M.J. Chan-Bacab, S.D.C. De
la Rosa-García, J.C. Camacho-Chab: Valuable processes and products from marine intertidal microbial communities, Current Opin. Biotechnol.
21, 346–352 (2010)
11.19
R. de Nys, P.D. Steinberg: Linking marine biology
and biotechnology, Current Opin. Biotechnol. 13,
244–248 (2002)
11.20
K.S. Lam: Discovery of novel metabolites from
marine actinomycetes, Current Opin. Microbiol. 9,
245–251 (2006)
11.21
P.R. Jensen, E. Gontang, C. Mafnas, T.J. Mincer, W. Fenical: Culturable marine actinomycete
diversity from tropical Pacific Ocean sediments,
Environ. Microbiol. 7, 1039–1048 (2005)
11.22
L. Maldonado, J. Stach, W. Pathom-aree, A. Ward,
A. Bull, M. Goodfellow: Diversity of cultivable
actinobacteria in geographically widespread marine sediments, Antonie van Leeuwenhoek 87,
11–18 (2005)
11.23
M. Goodfellow, H.-P. Fiedler: A guide to successful
bioprospecting: informed by actinobacterial systematics, Antonie van Leeuwenhoek 98, 119–142
(2010)
11.24
S.R. Vartoukian, R.M. Palmer, W.G. Wade: Strategies for culture of ‘unculturable’ bacteria, FEMS
Microbiol. Lett. 309, 1–7 (2010)
11.25
B.K. Singh: Exploring microbial diversity for
biotechnology: The way forward, Trends Biotechnol. 28, 111–116 (2010)
11.26
K.B. Heidelberg, J.A. Gilbert, I. Joint: Mar. Genomics: at the interface of marine microbial
ecology and biodiscovery, Microb. Biotechnol. 3,
531–543 (2010)
11.27
M.L. Metzker: Sequencing technologies – the next
generation, Nat. Rev. Genet. 11, 31–46 (2010)
11.28
I. Joint, M. Mühling, J. Querellou: Culturing marine bacteria – an essential prerequisite for
biodiscovery, Microb. Biotechnol. 3, 564–575
(2010)
11.29
O. Prakash, Y. Shouche, K. Jangid, J.E. Kostka:
Microbial cultivation and the role of microbial resource centers in the omics era, Appl. Microbiol.
Biotechnol. 97, 51–62 (2013)
11.30
K. Lewis, S. Epstein, A. D’Onofrio, L.L. Ling: Uncultured microorganisms as a source of secondary
metabolites, J. Antibiot. 63, 468–476 (2010)
11.31
H.S. Lee, K.K. Kwon, S.G. Kang, S.-S. Cha, S.J. Kim, J.-H. Lee: Approaches for novel enzyme discovery from marine environments, Current Opin. Biotechnol. 21, 353–357 (2010)
11.32
T. Kaeberlein, K. Lewis, S.S. Epstein: Isolating
“uncultivable” microorganisms in pure culture in
a simulated natural environment, Science 296,
1127–1129 (2002)
11.33
A. Bollmann, K. Lewis, S.S. Epstein: Incubation of environmental samples in a diffusion
chamber increases the diversity of recovered isolates, Appl. Environ. Microbiol. 73, 6386–6390
(2007)
11.34
E. Gavrish, A. Bollmann, S. Epstein, K. Lewis:
A trap for in situ cultivation of filamentous acti-